data_8VW4
#
_model_server_result.job_id            Pl0V-ntCshQpVBRxHY8j9w 
_model_server_result.datetime_utc      '2025-04-03 03:29:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vw4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":405}' 
#
_entry.id    8VW4 
#
_exptl.entry_id    8VW4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VW4 
_cell.length_a            73.376 
_cell.length_b            88.466 
_cell.length_c            118.492 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VW4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 188 A ASP 221 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 A OG1 THR 190 A THR 223 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc3 A OD1 ASN 192 A ASN 225 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc4 A O TYR 194 A TYR 227 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc5 A OE1 GLU 199 A GLU 232 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc6 A OE2 GLU 199 A GLU 232 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc7 B OD1 ASP 188 B ASP 221 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc8 B OG1 THR 190 B THR 223 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc9 B OD1 ASN 192 B ASN 225 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc10 B O TYR 194 B TYR 227 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc11 B OE1 GLU 199 B GLU 232 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc12 B OE2 GLU 199 B GLU 232 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc13 H MG MG . B MG 401 1_555 L O HOH . B HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 204 n n 
C1 C2 GOL sing 205 n n 
C1 H11 GOL sing 206 n n 
C1 H12 GOL sing 207 n n 
O1 HO1 GOL sing 208 n n 
C2 O2 GOL sing 209 n n 
C2 C3 GOL sing 210 n n 
C2 H2 GOL sing 211 n n 
O2 HO2 GOL sing 212 n n 
C3 O3 GOL sing 213 n n 
C3 H31 GOL sing 214 n n 
C3 H32 GOL sing 215 n n 
O3 HO3 GOL sing 216 n n 
#
_atom_sites.entry_id                     8VW4 
_atom_sites.fract_transf_matrix[1][1]    0.013628 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 2 MG MG . 
D 3 A1AEG A 1 402 1 A1AEG LIG . 
E 4 GOL A 1 403 2 GOL GOL . 
F 4 GOL A 1 404 3 GOL GOL . 
G 4 GOL A 1 405 4 GOL GOL . 
H 2 MG B 1 401 1 MG MG . 
I 5 PEG B 1 402 1 PEG PEG . 
J 3 A1AEG B 1 403 1 A1AEG LIG . 
K 6 HOH A 1 501 19 HOH HOH . 
K 6 HOH A 2 502 73 HOH HOH . 
K 6 HOH A 3 503 9 HOH HOH . 
K 6 HOH A 4 504 138 HOH HOH . 
K 6 HOH A 5 505 123 HOH HOH . 
K 6 HOH A 6 506 10 HOH HOH . 
K 6 HOH A 7 507 61 HOH HOH . 
K 6 HOH A 8 508 106 HOH HOH . 
K 6 HOH A 9 509 97 HOH HOH . 
K 6 HOH A 10 510 132 HOH HOH . 
K 6 HOH A 11 511 32 HOH HOH . 
K 6 HOH A 12 512 70 HOH HOH . 
K 6 HOH A 13 513 51 HOH HOH . 
K 6 HOH A 14 514 154 HOH HOH . 
K 6 HOH A 15 515 100 HOH HOH . 
K 6 HOH A 16 516 74 HOH HOH . 
K 6 HOH A 17 517 29 HOH HOH . 
K 6 HOH A 18 518 17 HOH HOH . 
K 6 HOH A 19 519 41 HOH HOH . 
K 6 HOH A 20 520 2 HOH HOH . 
K 6 HOH A 21 521 127 HOH HOH . 
K 6 HOH A 22 522 30 HOH HOH . 
K 6 HOH A 23 523 25 HOH HOH . 
K 6 HOH A 24 524 1 HOH HOH . 
K 6 HOH A 25 525 78 HOH HOH . 
K 6 HOH A 26 526 124 HOH HOH . 
K 6 HOH A 27 527 86 HOH HOH . 
K 6 HOH A 28 528 115 HOH HOH . 
K 6 HOH A 29 529 15 HOH HOH . 
K 6 HOH A 30 530 99 HOH HOH . 
K 6 HOH A 31 531 40 HOH HOH . 
K 6 HOH A 32 532 151 HOH HOH . 
K 6 HOH A 33 533 16 HOH HOH . 
K 6 HOH A 34 534 203 HOH HOH . 
K 6 HOH A 35 535 88 HOH HOH . 
K 6 HOH A 36 536 183 HOH HOH . 
K 6 HOH A 37 537 39 HOH HOH . 
K 6 HOH A 38 538 129 HOH HOH . 
K 6 HOH A 39 539 52 HOH HOH . 
K 6 HOH A 40 540 3 HOH HOH . 
K 6 HOH A 41 541 93 HOH HOH . 
K 6 HOH A 42 542 156 HOH HOH . 
K 6 HOH A 43 543 66 HOH HOH . 
K 6 HOH A 44 544 56 HOH HOH . 
K 6 HOH A 45 545 143 HOH HOH . 
K 6 HOH A 46 546 57 HOH HOH . 
K 6 HOH A 47 547 184 HOH HOH . 
K 6 HOH A 48 548 160 HOH HOH . 
K 6 HOH A 49 549 69 HOH HOH . 
K 6 HOH A 50 550 83 HOH HOH . 
K 6 HOH A 51 551 121 HOH HOH . 
K 6 HOH A 52 552 174 HOH HOH . 
K 6 HOH A 53 553 18 HOH HOH . 
K 6 HOH A 54 554 48 HOH HOH . 
K 6 HOH A 55 555 107 HOH HOH . 
K 6 HOH A 56 556 26 HOH HOH . 
K 6 HOH A 57 557 128 HOH HOH . 
K 6 HOH A 58 558 89 HOH HOH . 
K 6 HOH A 59 559 95 HOH HOH . 
K 6 HOH A 60 560 148 HOH HOH . 
K 6 HOH A 61 561 153 HOH HOH . 
K 6 HOH A 62 562 85 HOH HOH . 
K 6 HOH A 63 563 101 HOH HOH . 
K 6 HOH A 64 564 176 HOH HOH . 
K 6 HOH A 65 565 112 HOH HOH . 
K 6 HOH A 66 566 31 HOH HOH . 
K 6 HOH A 67 567 37 HOH HOH . 
K 6 HOH A 68 568 173 HOH HOH . 
K 6 HOH A 69 569 109 HOH HOH . 
K 6 HOH A 70 570 137 HOH HOH . 
K 6 HOH A 71 571 64 HOH HOH . 
K 6 HOH A 72 572 155 HOH HOH . 
K 6 HOH A 73 573 23 HOH HOH . 
K 6 HOH A 74 574 82 HOH HOH . 
K 6 HOH A 75 575 77 HOH HOH . 
K 6 HOH A 76 576 147 HOH HOH . 
K 6 HOH A 77 577 113 HOH HOH . 
K 6 HOH A 78 578 187 HOH HOH . 
K 6 HOH A 79 579 195 HOH HOH . 
K 6 HOH A 80 580 92 HOH HOH . 
K 6 HOH A 81 581 204 HOH HOH . 
K 6 HOH A 82 582 114 HOH HOH . 
K 6 HOH A 83 583 87 HOH HOH . 
K 6 HOH A 84 584 94 HOH HOH . 
K 6 HOH A 85 585 172 HOH HOH . 
K 6 HOH A 86 586 163 HOH HOH . 
K 6 HOH A 87 587 68 HOH HOH . 
K 6 HOH A 88 588 65 HOH HOH . 
K 6 HOH A 89 589 108 HOH HOH . 
K 6 HOH A 90 590 104 HOH HOH . 
L 6 HOH B 1 501 126 HOH HOH . 
L 6 HOH B 2 502 33 HOH HOH . 
L 6 HOH B 3 503 28 HOH HOH . 
L 6 HOH B 4 504 90 HOH HOH . 
L 6 HOH B 5 505 116 HOH HOH . 
L 6 HOH B 6 506 11 HOH HOH . 
L 6 HOH B 7 507 170 HOH HOH . 
L 6 HOH B 8 508 194 HOH HOH . 
L 6 HOH B 9 509 117 HOH HOH . 
L 6 HOH B 10 510 199 HOH HOH . 
L 6 HOH B 11 511 5 HOH HOH . 
L 6 HOH B 12 512 80 HOH HOH . 
L 6 HOH B 13 513 60 HOH HOH . 
L 6 HOH B 14 514 14 HOH HOH . 
L 6 HOH B 15 515 45 HOH HOH . 
L 6 HOH B 16 516 168 HOH HOH . 
L 6 HOH B 17 517 43 HOH HOH . 
L 6 HOH B 18 518 118 HOH HOH . 
L 6 HOH B 19 519 13 HOH HOH . 
L 6 HOH B 20 520 34 HOH HOH . 
L 6 HOH B 21 521 4 HOH HOH . 
L 6 HOH B 22 522 141 HOH HOH . 
L 6 HOH B 23 523 200 HOH HOH . 
L 6 HOH B 24 524 190 HOH HOH . 
L 6 HOH B 25 525 84 HOH HOH . 
L 6 HOH B 26 526 44 HOH HOH . 
L 6 HOH B 27 527 42 HOH HOH . 
L 6 HOH B 28 528 139 HOH HOH . 
L 6 HOH B 29 529 35 HOH HOH . 
L 6 HOH B 30 530 12 HOH HOH . 
L 6 HOH B 31 531 122 HOH HOH . 
L 6 HOH B 32 532 22 HOH HOH . 
L 6 HOH B 33 533 72 HOH HOH . 
L 6 HOH B 34 534 7 HOH HOH . 
L 6 HOH B 35 535 59 HOH HOH . 
L 6 HOH B 36 536 46 HOH HOH . 
L 6 HOH B 37 537 145 HOH HOH . 
L 6 HOH B 38 538 38 HOH HOH . 
L 6 HOH B 39 539 47 HOH HOH . 
L 6 HOH B 40 540 36 HOH HOH . 
L 6 HOH B 41 541 21 HOH HOH . 
L 6 HOH B 42 542 191 HOH HOH . 
L 6 HOH B 43 543 166 HOH HOH . 
L 6 HOH B 44 544 8 HOH HOH . 
L 6 HOH B 45 545 20 HOH HOH . 
L 6 HOH B 46 546 75 HOH HOH . 
L 6 HOH B 47 547 175 HOH HOH . 
L 6 HOH B 48 548 81 HOH HOH . 
L 6 HOH B 49 549 111 HOH HOH . 
L 6 HOH B 50 550 201 HOH HOH . 
L 6 HOH B 51 551 54 HOH HOH . 
L 6 HOH B 52 552 49 HOH HOH . 
L 6 HOH B 53 553 102 HOH HOH . 
L 6 HOH B 54 554 110 HOH HOH . 
L 6 HOH B 55 555 103 HOH HOH . 
L 6 HOH B 56 556 24 HOH HOH . 
L 6 HOH B 57 557 98 HOH HOH . 
L 6 HOH B 58 558 62 HOH HOH . 
L 6 HOH B 59 559 149 HOH HOH . 
L 6 HOH B 60 560 177 HOH HOH . 
L 6 HOH B 61 561 27 HOH HOH . 
L 6 HOH B 62 562 198 HOH HOH . 
L 6 HOH B 63 563 142 HOH HOH . 
L 6 HOH B 64 564 105 HOH HOH . 
L 6 HOH B 65 565 185 HOH HOH . 
L 6 HOH B 66 566 193 HOH HOH . 
L 6 HOH B 67 567 71 HOH HOH . 
L 6 HOH B 68 568 63 HOH HOH . 
L 6 HOH B 69 569 181 HOH HOH . 
L 6 HOH B 70 570 164 HOH HOH . 
L 6 HOH B 71 571 125 HOH HOH . 
L 6 HOH B 72 572 196 HOH HOH . 
L 6 HOH B 73 573 189 HOH HOH . 
L 6 HOH B 74 574 197 HOH HOH . 
L 6 HOH B 75 575 96 HOH HOH . 
L 6 HOH B 76 576 202 HOH HOH . 
L 6 HOH B 77 577 157 HOH HOH . 
L 6 HOH B 78 578 188 HOH HOH . 
L 6 HOH B 79 579 134 HOH HOH . 
L 6 HOH B 80 580 136 HOH HOH . 
L 6 HOH B 81 581 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -10.398 -3.333 -23.76 1 55.34 ? C1 GOL 405 A 1 
HETATM 2 O O1 GOL . . . G 4 -10.448 -4.736 -23.865 1 60.14 ? O1 GOL 405 A 1 
HETATM 3 C C2 GOL . . . G 4 -11.35 -2.872 -22.609 1 63.99 ? C2 GOL 405 A 1 
HETATM 4 O O2 GOL . . . G 4 -10.997 -1.614 -22.133 1 57.94 ? O2 GOL 405 A 1 
HETATM 5 C C3 GOL . . . G 4 -12.727 -2.897 -23.295 1 74.48 ? C3 GOL 405 A 1 
HETATM 6 O O3 GOL . . . G 4 -13.621 -3.563 -22.451 1 63.76 ? O3 GOL 405 A 1 
HETATM 7 H H11 GOL . . . G 4 -10.669 -2.895 -24.582 1 66.44 ? H11 GOL 405 A 1 
HETATM 8 H H12 GOL . . . G 4 -9.502 -3.012 -23.57 1 66.44 ? H12 GOL 405 A 1 
HETATM 9 H HO1 GOL . . . G 4 -11.27 -4.956 -23.852 1 72.19 ? HO1 GOL 405 A 1 
HETATM 10 H H2 GOL . . . G 4 -11.32 -3.454 -21.834 1 76.81 ? H2 GOL 405 A 1 
HETATM 11 H HO2 GOL . . . G 4 -10.765 -1.164 -22.795 1 69.56 ? HO2 GOL 405 A 1 
HETATM 12 H H31 GOL . . . G 4 -12.632 -3.323 -24.161 1 89.41 ? H31 GOL 405 A 1 
HETATM 13 H H32 GOL . . . G 4 -12.992 -1.984 -23.485 1 89.41 ? H32 GOL 405 A 1 
HETATM 14 H HO3 GOL . . . G 4 -13.504 -3.245 -21.688 1 76.54 ? HO3 GOL 405 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#