data_8VW7 # _model_server_result.job_id MiCO0vZ368ZiL7yCK7VS_Q _model_server_result.datetime_utc '2024-11-16 09:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 8VW7 # _exptl.entry_id 8VW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.65 _cell.angle_beta 90.13 _cell.angle_gamma 90.07 _cell.entry_id 8VW7 _cell.length_a 9.025 _cell.length_b 30.416 _cell.length_c 30.437 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C02 I6W 1 A I6W 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 A C ALA 2 A ALA 2 1_555 A N AIB 3 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C AIB 3 A AIB 3 1_555 A N LEU 4 A LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C LEU 4 A LEU 4 1_555 A N AIB 5 A AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C AIB 5 A AIB 5 1_555 A N ALA 6 A ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C ALA 6 A ALA 6 1_555 A N AIB 7 A AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C AIB 7 A AIB 7 1_555 A N LEU 8 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C LEU 8 A LEU 8 1_555 A N AIB 9 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C AIB 9 A AIB 9 1_555 A N GLN 10 A GLN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C GLN 10 A GLN 10 1_555 A N AIB 11 A AIB 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C AIB 11 A AIB 11 1_555 A N LEU 12 A LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C LEU 12 A LEU 12 1_555 A N15 I77 13 A I77 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale13 B C02 I6W 1 B I6W 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale14 B C ALA 2 B ALA 2 1_555 B N AIB 3 B AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 B C AIB 3 B AIB 3 1_555 B N LEU 4 B LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale16 B C LEU 4 B LEU 4 1_555 B N AIB 5 B AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C AIB 5 B AIB 5 1_555 B N ALA 6 B ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C ALA 6 B ALA 6 1_555 B N AIB 7 B AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C AIB 7 B AIB 7 1_555 B N LEU 8 B LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C LEU 8 B LEU 8 1_555 B N AIB 9 B AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B C AIB 9 B AIB 9 1_555 B N GLN 10 B GLN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale22 B C GLN 10 B GLN 10 1_555 B N AIB 11 B AIB 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C AIB 11 B AIB 11 1_555 B N LEU 12 B LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 B C LEU 12 B LEU 12 1_555 B N15 I77 13 B I77 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A N10 I6W 1 A I6W 1 1_555 E AG AG . A AG 103 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A N07 I6W 1 A I6W 1 1_555 E AG AG . A AG 103 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A N07 I77 13 A I77 13 1_555 C AG AG . A AG 101 1_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A N10 I77 13 A I77 13 1_555 C AG AG . A AG 101 1_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 C AG AG . A AG 101 1_556 B N10 I6W 1 B I6W 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 C AG AG . A AG 101 1_556 B N07 I6W 1 B I6W 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc7 E AG AG . A AG 103 1_665 B N07 I77 13 B I77 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 E AG AG . A AG 103 1_665 B N10 I77 13 B I77 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 133 n n N O2 NO3 sing 134 n n N O3 NO3 sing 135 n n # _atom_sites.entry_id 8VW7 _atom_sites.fract_transf_matrix[1][1] 0.110803 _atom_sites.fract_transf_matrix[1][2] 0.000135 _atom_sites.fract_transf_matrix[1][3] 0.00032 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032877 _atom_sites.fract_transf_matrix[2][3] 0.012391 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG A 1 101 1 AG AG . D 3 NO3 A 1 102 2 NO3 NO3 . E 2 AG A 1 103 1 AG AG . F 3 NO3 B 1 101 2 NO3 NO3 . G 4 HOH A 1 201 13 HOH HOH . G 4 HOH A 2 202 15 HOH HOH . G 4 HOH A 3 203 5 HOH HOH . G 4 HOH A 4 204 4 HOH HOH . G 4 HOH A 5 205 1 HOH HOH . G 4 HOH A 6 206 8 HOH HOH . G 4 HOH A 7 207 14 HOH HOH . H 4 HOH B 1 201 6 HOH HOH . H 4 HOH B 2 202 7 HOH HOH . H 4 HOH B 3 203 3 HOH HOH . H 4 HOH B 4 204 2 HOH HOH . H 4 HOH B 5 205 12 HOH HOH . H 4 HOH B 6 206 10 HOH HOH . H 4 HOH B 7 207 9 HOH HOH . H 4 HOH B 8 208 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 2.12 4.668 6.811 1 74.17 ? N NO3 102 A 1 HETATM 2 O O1 NO3 . . . D 3 1.626 4.755 7.976 1 73.25 ? O1 NO3 102 A 1 HETATM 3 O O2 NO3 . . . D 3 1.783 5.507 5.922 1 76.62 ? O2 NO3 102 A 1 HETATM 4 O O3 NO3 . . . D 3 2.949 3.748 6.532 1 71.51 ? O3 NO3 102 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #