data_8VWP
#
_model_server_result.job_id            IOHw4Nk1jgYhIQ5iI0FIlA 
_model_server_result.datetime_utc      '2024-11-22 21:01:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vwp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    8VWP 
#
_exptl.entry_id    8VWP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 121 A CYS 188 1_555 A SG CYS 537 A CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 152 A CYS 219 1_555 A SG CYS 176 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 218 A CYS 285 1_555 A SG CYS 231 A CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 312 A CYS 379 1_555 A SG CYS 329 A CYS 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 A SG CYS 317 A CYS 384 1_555 A SG CYS 435 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 A SG CYS 427 A CYS 494 1_555 A SG CYS 439 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 501 A CYS 568 1_555 A SG CYS 510 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 B SG CYS 121 B CYS 188 1_555 B SG CYS 537 B CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf9 B SG CYS 152 B CYS 219 1_555 B SG CYS 176 B CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf10 B SG CYS 218 B CYS 285 1_555 B SG CYS 231 B CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 B SG CYS 312 B CYS 379 1_555 B SG CYS 329 B CYS 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf12 B SG CYS 317 B CYS 384 1_555 B SG CYS 435 B CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 B SG CYS 427 B CYS 494 1_555 B SG CYS 439 B CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 B SG CYS 501 B CYS 568 1_555 B SG CYS 510 B CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf15 C SG CYS 121 C CYS 188 1_555 C SG CYS 537 C CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf16 C SG CYS 152 C CYS 219 1_555 C SG CYS 176 C CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf17 C SG CYS 218 C CYS 285 1_555 C SG CYS 231 C CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 C SG CYS 312 C CYS 379 1_555 C SG CYS 329 C CYS 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf19 C SG CYS 317 C CYS 384 1_555 C SG CYS 435 C CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf20 C SG CYS 427 C CYS 494 1_555 C SG CYS 439 C CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf21 C SG CYS 501 C CYS 568 1_555 C SG CYS 510 C CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf22 D SG CYS 121 D CYS 188 1_555 D SG CYS 537 D CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf23 D SG CYS 152 D CYS 219 1_555 D SG CYS 176 D CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf24 D SG CYS 218 D CYS 285 1_555 D SG CYS 231 D CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf25 D SG CYS 312 D CYS 379 1_555 D SG CYS 329 D CYS 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf26 D SG CYS 317 D CYS 384 1_555 D SG CYS 435 D CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf27 D SG CYS 427 D CYS 494 1_555 D SG CYS 439 D CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf28 D SG CYS 501 D CYS 568 1_555 D SG CYS 510 D CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 122 A ASN 189 1_555 E C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? 
covale ? covale2 B ND2 ASN 122 B ASN 189 1_555 F C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? 
covale ? covale3 C ND2 ASN 122 C ASN 189 1_555 G C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? 
covale ? covale4 D ND2 ASN 122 D ASN 189 1_555 H C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8VWP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 701 608 NAG NAG . 
F 2 NAG B 1 701 608 NAG NAG . 
G 2 NAG C 1 701 608 NAG NAG . 
H 2 NAG D 1 701 608 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 2 168.67 223.271 246.776 1 42.86 ? C1 NAG 701 B 1 
HETATM 2 C C2 NAG . . . F 2 167.918 223.518 248.145 1 42.97 ? C2 NAG 701 B 1 
HETATM 3 C C3 NAG . . . F 2 167.912 222.184 248.943 1 43.44 ? C3 NAG 701 B 1 
HETATM 4 C C4 NAG . . . F 2 167.205 221.089 248.097 1 43.8 ? C4 NAG 701 B 1 
HETATM 5 C C5 NAG . . . F 2 167.964 220.923 246.748 1 43.78 ? C5 NAG 701 B 1 
HETATM 6 C C6 NAG . . . F 2 167.304 219.899 245.83 1 43.55 ? C6 NAG 701 B 1 
HETATM 7 C C7 NAG . . . F 2 168.236 225.818 248.977 1 42.37 ? C7 NAG 701 B 1 
HETATM 8 C C8 NAG . . . F 2 169.031 226.828 249.75 1 41.9 ? C8 NAG 701 B 1 
HETATM 9 N N2 NAG . . . F 2 168.657 224.55 248.909 1 42.48 ? N2 NAG 701 B 1 
HETATM 10 O O3 NAG . . . F 2 167.208 222.364 250.182 1 43.39 ? O3 NAG 701 B 1 
HETATM 11 O O4 NAG . . . F 2 167.219 219.857 248.816 1 43.73 ? O4 NAG 701 B 1 
HETATM 12 O O5 NAG . . . F 2 167.992 222.216 246.03 1 43.18 ? O5 NAG 701 B 1 
HETATM 13 O O6 NAG . . . F 2 168.127 219.597 244.708 1 42.63 ? O6 NAG 701 B 1 
HETATM 14 O O7 NAG . . . F 2 167.195 226.174 248.404 1 42.38 ? O7 NAG 701 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#