data_8VX0 # _model_server_result.job_id GWEzpB4Nd8ZbDK5UTMpaKQ _model_server_result.datetime_utc '2024-12-03 20:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 8VX0 # _exptl.entry_id 8VX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VX0 _cell.length_a 75.209 _cell.length_b 141.659 _cell.length_c 161.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 435 1_555 E FE HEM . A HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 E FE HEM . A HEM 504 1_555 G O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 398 n n P O2 PO4 sing 399 n n P O3 PO4 sing 400 n n P O4 PO4 sing 401 n n # _atom_sites.entry_id 8VX0 _atom_sites.fract_transf_matrix[1][1] 0.013296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LSN A 1 501 501 LSN lsn . C 2 LSN A 1 502 502 LSN lsn . D 3 K A 1 503 505 K K . E 4 HEM A 1 504 504 HEM HEM . F 5 PO4 A 1 505 1 PO4 PO4 . G 6 HOH A 1 601 8 HOH HOH . G 6 HOH A 2 602 655 HOH HOH . G 6 HOH A 3 603 612 HOH HOH . G 6 HOH A 4 604 111 HOH HOH . G 6 HOH A 5 605 641 HOH HOH . G 6 HOH A 6 606 43 HOH HOH . G 6 HOH A 7 607 602 HOH HOH . G 6 HOH A 8 608 610 HOH HOH . G 6 HOH A 9 609 614 HOH HOH . G 6 HOH A 10 610 643 HOH HOH . G 6 HOH A 11 611 14 HOH HOH . G 6 HOH A 12 612 616 HOH HOH . G 6 HOH A 13 613 81 HOH HOH . G 6 HOH A 14 614 45 HOH HOH . G 6 HOH A 15 615 606 HOH HOH . G 6 HOH A 16 616 622 HOH HOH . G 6 HOH A 17 617 604 HOH HOH . G 6 HOH A 18 618 601 HOH HOH . G 6 HOH A 19 619 31 HOH HOH . G 6 HOH A 20 620 665 HOH HOH . G 6 HOH A 21 621 672 HOH HOH . G 6 HOH A 22 622 12 HOH HOH . G 6 HOH A 23 623 22 HOH HOH . G 6 HOH A 24 624 650 HOH HOH . G 6 HOH A 25 625 652 HOH HOH . G 6 HOH A 26 626 16 HOH HOH . G 6 HOH A 27 627 657 HOH HOH . G 6 HOH A 28 628 638 HOH HOH . G 6 HOH A 29 629 61 HOH HOH . G 6 HOH A 30 630 671 HOH HOH . G 6 HOH A 31 631 87 HOH HOH . G 6 HOH A 32 632 129 HOH HOH . G 6 HOH A 33 633 613 HOH HOH . G 6 HOH A 34 634 104 HOH HOH . G 6 HOH A 35 635 656 HOH HOH . G 6 HOH A 36 636 25 HOH HOH . G 6 HOH A 37 637 669 HOH HOH . G 6 HOH A 38 638 626 HOH HOH . G 6 HOH A 39 639 629 HOH HOH . G 6 HOH A 40 640 658 HOH HOH . G 6 HOH A 41 641 635 HOH HOH . G 6 HOH A 42 642 679 HOH HOH . G 6 HOH A 43 643 664 HOH HOH . G 6 HOH A 44 644 608 HOH HOH . G 6 HOH A 45 645 100 HOH HOH . G 6 HOH A 46 646 649 HOH HOH . G 6 HOH A 47 647 640 HOH HOH . G 6 HOH A 48 648 660 HOH HOH . G 6 HOH A 49 649 692 HOH HOH . G 6 HOH A 50 650 673 HOH HOH . G 6 HOH A 51 651 96 HOH HOH . G 6 HOH A 52 652 695 HOH HOH . G 6 HOH A 53 653 644 HOH HOH . G 6 HOH A 54 654 677 HOH HOH . G 6 HOH A 55 655 630 HOH HOH . G 6 HOH A 56 656 627 HOH HOH . G 6 HOH A 57 657 636 HOH HOH . G 6 HOH A 58 658 44 HOH HOH . G 6 HOH A 59 659 80 HOH HOH . G 6 HOH A 60 660 691 HOH HOH . G 6 HOH A 61 661 647 HOH HOH . G 6 HOH A 62 662 105 HOH HOH . G 6 HOH A 63 663 62 HOH HOH . G 6 HOH A 64 664 674 HOH HOH . G 6 HOH A 65 665 662 HOH HOH . G 6 HOH A 66 666 623 HOH HOH . G 6 HOH A 67 667 132 HOH HOH . G 6 HOH A 68 668 676 HOH HOH . G 6 HOH A 69 669 689 HOH HOH . G 6 HOH A 70 670 88 HOH HOH . G 6 HOH A 71 671 53 HOH HOH . G 6 HOH A 72 672 651 HOH HOH . G 6 HOH A 73 673 83 HOH HOH . G 6 HOH A 74 674 633 HOH HOH . G 6 HOH A 75 675 683 HOH HOH . G 6 HOH A 76 676 686 HOH HOH . G 6 HOH A 77 677 693 HOH HOH . G 6 HOH A 78 678 666 HOH HOH . G 6 HOH A 79 679 696 HOH HOH . G 6 HOH A 80 680 648 HOH HOH . G 6 HOH A 81 681 108 HOH HOH . G 6 HOH A 82 682 91 HOH HOH . G 6 HOH A 83 683 39 HOH HOH . G 6 HOH A 84 684 119 HOH HOH . G 6 HOH A 85 685 110 HOH HOH . G 6 HOH A 86 686 699 HOH HOH . G 6 HOH A 87 687 690 HOH HOH . G 6 HOH A 88 688 29 HOH HOH . G 6 HOH A 89 689 46 HOH HOH . G 6 HOH A 90 690 667 HOH HOH . G 6 HOH A 91 691 28 HOH HOH . G 6 HOH A 92 692 47 HOH HOH . G 6 HOH A 93 693 680 HOH HOH . G 6 HOH A 94 694 605 HOH HOH . G 6 HOH A 95 695 661 HOH HOH . G 6 HOH A 96 696 684 HOH HOH . G 6 HOH A 97 697 127 HOH HOH . G 6 HOH A 98 698 74 HOH HOH . G 6 HOH A 99 699 125 HOH HOH . G 6 HOH A 100 700 698 HOH HOH . G 6 HOH A 101 701 118 HOH HOH . G 6 HOH A 102 702 703 HOH HOH . G 6 HOH A 103 703 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 5 -22.319 -15.468 -52.078 1 98.5 ? P PO4 505 A 1 HETATM 2 O O1 PO4 . . . F 5 -21.372 -15.512 -53.253 1 92.67 ? O1 PO4 505 A 1 HETATM 3 O O2 PO4 . . . F 5 -23.739 -15.853 -52.534 1 70.52 ? O2 PO4 505 A 1 HETATM 4 O O3 PO4 . . . F 5 -22.284 -14.049 -51.52 1 79.87 ? O3 PO4 505 A 1 HETATM 5 O O4 PO4 . . . F 5 -21.787 -16.473 -51.072 1 80.85 ? O4 PO4 505 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #