data_8VXS # _model_server_result.job_id wtyqUcRpTBKScTNMpk7FMA _model_server_result.datetime_utc '2024-10-12 15:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 8VXS # _exptl.entry_id 8VXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.86 _cell.angle_gamma 90 _cell.entry_id 8VXS _cell.length_a 60.24 _cell.length_b 14.07 _cell.length_c 36.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C02 I6W 1 A I6W 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 A C ALA 2 A ALA 2 1_555 A N AIB 3 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C AIB 3 A AIB 3 1_555 A N ALA 4 A ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C ALA 4 A ALA 4 1_555 A N AIB 5 A AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C AIB 5 A AIB 5 1_555 A N ALA 6 A ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C ALA 6 A ALA 6 1_555 A N AIB 7 A AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C AIB 7 A AIB 7 1_555 A N LEU 8 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C LEU 8 A LEU 8 1_555 A N AIB 9 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C AIB 9 A AIB 9 1_555 A N ALA 10 A ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C ALA 10 A ALA 10 1_555 A N AIB 11 A AIB 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C AIB 11 A AIB 11 1_555 A N LEU 12 A LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 A C LEU 12 A LEU 12 1_555 A N AIB 13 A AIB 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C AIB 13 A AIB 13 1_555 A N GLN 14 A GLN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C GLN 14 A GLN 14 1_555 A N AIB 15 A AIB 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C AIB 15 A AIB 15 1_555 A N LEU 16 A LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 A C LEU 16 A LEU 16 1_555 A N15 I77 17 A I77 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale17 B C02 I6W 1 B I6W 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale18 B C ALA 2 B ALA 2 1_555 B N AIB 3 B AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C AIB 3 B AIB 3 1_555 B N ALA 4 B ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C ALA 4 B ALA 4 1_555 B N AIB 5 B AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale21 B C AIB 5 B AIB 5 1_555 B N ALA 6 B ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale22 B C ALA 6 B ALA 6 1_555 B N AIB 7 B AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C AIB 7 B AIB 7 1_555 B N LEU 8 B LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 B C LEU 8 B LEU 8 1_555 B N AIB 9 B AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C AIB 9 B AIB 9 1_555 B N ALA 10 B ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 B C ALA 10 B ALA 10 1_555 B N AIB 11 B AIB 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 B C AIB 11 B AIB 11 1_555 B N LEU 12 B LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 B C LEU 12 B LEU 12 1_555 B N AIB 13 B AIB 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale29 B C AIB 13 B AIB 13 1_555 B N GLN 14 B GLN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 B C GLN 14 B GLN 14 1_555 B N AIB 15 B AIB 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale31 B C AIB 15 B AIB 15 1_555 B N LEU 16 B LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale32 B C LEU 16 B LEU 16 1_555 B N15 I77 17 B I77 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 28 n n C1 C2 CCN sing 29 n n C2 H21 CCN sing 30 n n C2 H22 CCN sing 31 n n C2 H23 CCN sing 32 n n # _atom_sites.entry_id 8VXS _atom_sites.fract_transf_matrix[1][1] 0.0166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.071073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CCN A 1 101 18 CCN CCN . D 2 CCN A 1 102 20 CCN CCN . E 2 CCN A 1 103 21 CCN CCN . F 2 CCN B 1 101 17 CCN CCN . G 2 CCN B 1 102 19 CCN CCN . H 3 HOH A 1 201 6 HOH HOH . H 3 HOH A 2 202 4 HOH HOH . H 3 HOH A 3 203 3 HOH HOH . H 3 HOH A 4 204 16 HOH HOH . H 3 HOH A 5 205 8 HOH HOH . H 3 HOH A 6 206 10 HOH HOH . I 3 HOH B 1 201 14 HOH HOH . I 3 HOH B 2 202 5 HOH HOH . I 3 HOH B 3 203 9 HOH HOH . I 3 HOH B 4 204 1 HOH HOH . I 3 HOH B 5 205 2 HOH HOH . I 3 HOH B 6 206 7 HOH HOH . I 3 HOH B 7 207 11 HOH HOH . I 3 HOH B 8 208 12 HOH HOH . I 3 HOH B 9 209 15 HOH HOH . I 3 HOH B 10 210 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . E 2 13.402 5.936 7.568 1 36.57 ? N CCN 103 A 1 HETATM 2 C C1 CCN . . . E 2 13.93 6.896 7.217 1 36.71 ? C1 CCN 103 A 1 HETATM 3 C C2 CCN . . . E 2 14.587 8.113 6.789 1 35.33 ? C2 CCN 103 A 1 HETATM 4 H H21 CCN . . . E 2 15.173 7.928 6.039 1 42.4 ? H21 CCN 103 A 1 HETATM 5 H H22 CCN . . . E 2 13.925 8.769 6.517 1 42.4 ? H22 CCN 103 A 1 HETATM 6 H H23 CCN . . . E 2 15.113 8.48 7.517 1 42.4 ? H23 CCN 103 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #