data_8VYY # _model_server_result.job_id 5OTuZixQEKSFdJ32g-3C5g _model_server_result.datetime_utc '2025-06-27 23:41:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8VYY # _exptl.entry_id 8VYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.252 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (betaS)-beta-methyl-L-tryptophan _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VYY _cell.length_a 196.119 _cell.length_b 196.119 _cell.length_c 113.06 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -113.06 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 203 A HIS 201 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 B NE2 HIS 203 B HIS 201 1_555 E FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'C12 H14 N2 O2' _chem_comp.formula_weight 218.252 _chem_comp.id 78U _chem_comp.mon_nstd_flag . _chem_comp.name (betaS)-beta-methyl-L-tryptophan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 78U doub 1 n n C OXT 78U sing 2 n n C CA 78U sing 3 n n CA CB 78U sing 4 n n CA N 78U sing 5 n n CB CAG 78U sing 6 n n CB CG 78U sing 7 n n CD1 CG 78U doub 8 n y CD1 NE1 78U sing 9 n y CG CD2 78U sing 10 n y NE1 CE2 78U sing 11 n y CD2 CE2 78U doub 12 n y CD2 CE3 78U sing 13 n y CE2 CZ2 78U sing 14 n y CE3 CZ3 78U doub 15 n y CZ2 CH2 78U doub 16 n y CZ3 CH2 78U sing 17 n y OXT H1 78U sing 18 n n CA H2 78U sing 19 n n N H3 78U sing 20 n n N H4 78U sing 21 n n CB H6 78U sing 22 n n CAG H7 78U sing 23 n n CAG H8 78U sing 24 n n CAG H9 78U sing 25 n n CE3 H10 78U sing 26 n n CZ3 H11 78U sing 27 n n CH2 H12 78U sing 28 n n CZ2 H13 78U sing 29 n n NE1 H14 78U sing 30 n n CD1 H15 78U sing 31 n n # _atom_sites.entry_id 8VYY _atom_sites.fract_transf_matrix[1][1] 0.005099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 301 301 HEM HEM . D 3 78U A 1 302 401 78U 78U . E 2 HEM B 1 301 301 HEM HEM . F 3 78U B 1 302 401 78U 78U . G 4 HOH A 1 401 75 HOH HOH . G 4 HOH A 2 402 34 HOH HOH . G 4 HOH A 3 403 42 HOH HOH . G 4 HOH A 4 404 61 HOH HOH . G 4 HOH A 5 405 67 HOH HOH . G 4 HOH A 6 406 26 HOH HOH . G 4 HOH A 7 407 78 HOH HOH . G 4 HOH A 8 408 23 HOH HOH . G 4 HOH A 9 409 25 HOH HOH . G 4 HOH A 10 410 7 HOH HOH . G 4 HOH A 11 411 16 HOH HOH . G 4 HOH A 12 412 8 HOH HOH . G 4 HOH A 13 413 13 HOH HOH . G 4 HOH A 14 414 82 HOH HOH . G 4 HOH A 15 415 37 HOH HOH . G 4 HOH A 16 416 14 HOH HOH . G 4 HOH A 17 417 60 HOH HOH . G 4 HOH A 18 418 79 HOH HOH . G 4 HOH A 19 419 74 HOH HOH . G 4 HOH A 20 420 2 HOH HOH . G 4 HOH A 21 421 31 HOH HOH . G 4 HOH A 22 422 3 HOH HOH . G 4 HOH A 23 423 28 HOH HOH . G 4 HOH A 24 424 71 HOH HOH . G 4 HOH A 25 425 38 HOH HOH . G 4 HOH A 26 426 54 HOH HOH . G 4 HOH A 27 427 86 HOH HOH . G 4 HOH A 28 428 73 HOH HOH . G 4 HOH A 29 429 49 HOH HOH . G 4 HOH A 30 430 24 HOH HOH . G 4 HOH A 31 431 35 HOH HOH . G 4 HOH A 32 432 48 HOH HOH . G 4 HOH A 33 433 97 HOH HOH . G 4 HOH A 34 434 77 HOH HOH . G 4 HOH A 35 435 80 HOH HOH . G 4 HOH A 36 436 18 HOH HOH . G 4 HOH A 37 437 32 HOH HOH . G 4 HOH A 38 438 72 HOH HOH . G 4 HOH A 39 439 91 HOH HOH . G 4 HOH A 40 440 92 HOH HOH . G 4 HOH A 41 441 94 HOH HOH . G 4 HOH A 42 442 89 HOH HOH . G 4 HOH A 43 443 93 HOH HOH . G 4 HOH A 44 444 76 HOH HOH . G 4 HOH A 45 445 90 HOH HOH . G 4 HOH A 46 446 84 HOH HOH . G 4 HOH A 47 447 81 HOH HOH . H 4 HOH B 1 401 56 HOH HOH . H 4 HOH B 2 402 36 HOH HOH . H 4 HOH B 3 403 27 HOH HOH . H 4 HOH B 4 404 88 HOH HOH . H 4 HOH B 5 405 4 HOH HOH . H 4 HOH B 6 406 17 HOH HOH . H 4 HOH B 7 407 5 HOH HOH . H 4 HOH B 8 408 11 HOH HOH . H 4 HOH B 9 409 12 HOH HOH . H 4 HOH B 10 410 50 HOH HOH . H 4 HOH B 11 411 65 HOH HOH . H 4 HOH B 12 412 39 HOH HOH . H 4 HOH B 13 413 29 HOH HOH . H 4 HOH B 14 414 51 HOH HOH . H 4 HOH B 15 415 66 HOH HOH . H 4 HOH B 16 416 20 HOH HOH . H 4 HOH B 17 417 1 HOH HOH . H 4 HOH B 18 418 45 HOH HOH . H 4 HOH B 19 419 15 HOH HOH . H 4 HOH B 20 420 52 HOH HOH . H 4 HOH B 21 421 6 HOH HOH . H 4 HOH B 22 422 41 HOH HOH . H 4 HOH B 23 423 19 HOH HOH . H 4 HOH B 24 424 63 HOH HOH . H 4 HOH B 25 425 64 HOH HOH . H 4 HOH B 26 426 68 HOH HOH . H 4 HOH B 27 427 59 HOH HOH . H 4 HOH B 28 428 43 HOH HOH . H 4 HOH B 29 429 55 HOH HOH . H 4 HOH B 30 430 47 HOH HOH . H 4 HOH B 31 431 62 HOH HOH . H 4 HOH B 32 432 10 HOH HOH . H 4 HOH B 33 433 40 HOH HOH . H 4 HOH B 34 434 30 HOH HOH . H 4 HOH B 35 435 21 HOH HOH . H 4 HOH B 36 436 83 HOH HOH . H 4 HOH B 37 437 44 HOH HOH . H 4 HOH B 38 438 58 HOH HOH . H 4 HOH B 39 439 85 HOH HOH . H 4 HOH B 40 440 57 HOH HOH . H 4 HOH B 41 441 22 HOH HOH . H 4 HOH B 42 442 33 HOH HOH . H 4 HOH B 43 443 98 HOH HOH . H 4 HOH B 44 444 69 HOH HOH . H 4 HOH B 45 445 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT 78U . A . D 3 -7.077 33.061 -61.381 0.56 63.38 ? OXT 78U 302 A 1 HETATM 2 O OXT 78U . B . D 3 -6.905 32.868 -61.149 0.1 62.29 ? OXT 78U 302 A 1 HETATM 3 C C 78U . A . D 3 -7.786 33.826 -62.102 0.56 61.67 ? C 78U 302 A 1 HETATM 4 C C 78U . B . D 3 -7.724 33.552 -61.822 0.1 61.09 ? C 78U 302 A 1 HETATM 5 O O 78U . A . D 3 -8.025 33.519 -63.305 0.56 61.08 ? O 78U 302 A 1 HETATM 6 O O 78U . B . D 3 -7.711 33.473 -63.079 0.1 61.16 ? O 78U 302 A 1 HETATM 7 C CA 78U . A . D 3 -8.345 35.145 -61.558 0.56 58.81 ? CA 78U 302 A 1 HETATM 8 C CA 78U . B . D 3 -8.718 34.463 -61.092 0.1 57.71 ? CA 78U 302 A 1 HETATM 9 N N 78U . A . D 3 -9.033 35.84 -62.652 0.56 58.73 ? N 78U 302 A 1 HETATM 10 N N 78U . B . D 3 -8.26 34.6 -59.718 0.1 56.36 ? N 78U 302 A 1 HETATM 11 C CB 78U . A . D 3 -9.308 34.937 -60.377 0.56 59.01 ? CB 78U 302 A 1 HETATM 12 C CB 78U . B . D 3 -8.838 35.828 -61.79 0.1 57.86 ? CB 78U 302 A 1 HETATM 13 C CAG 78U . A . D 3 -8.699 34.23 -59.16 0.56 54.03 ? CAG 78U 302 A 1 HETATM 14 C CAG 78U . B . D 3 -9.786 35.746 -62.989 0.1 56.14 ? CAG 78U 302 A 1 HETATM 15 C CG 78U . A . D 3 -9.705 36.332 -59.914 0.56 59.25 ? CG 78U 302 A 1 HETATM 16 C CG 78U . B . D 3 -9.372 36.934 -60.871 0.1 56.6 ? CG 78U 302 A 1 HETATM 17 C CD2 78U . A . D 3 -9.469 37.674 -59.874 0.56 57.52 ? CD2 78U 302 A 1 HETATM 18 C CD2 78U . B . D 3 -9.279 38.179 -60.322 0.1 56.28 ? CD2 78U 302 A 1 HETATM 19 C CE3 78U . A . D 3 -8.456 38.471 -60.437 0.56 57.53 ? CE3 78U 302 A 1 HETATM 20 C CE3 78U . B . D 3 -8.315 39.193 -60.454 0.1 56.42 ? CE3 78U 302 A 1 HETATM 21 C CZ3 78U . A . D 3 -8.446 39.842 -60.238 0.56 55.91 ? CZ3 78U 302 A 1 HETATM 22 C CZ3 78U . B . D 3 -8.457 40.386 -59.764 0.1 54.39 ? CZ3 78U 302 A 1 HETATM 23 C CH2 78U . A . D 3 -9.443 40.426 -59.485 0.56 52.84 ? CH2 78U 302 A 1 HETATM 24 C CH2 78U . B . D 3 -9.555 40.581 -58.945 0.1 53.2 ? CH2 78U 302 A 1 HETATM 25 C CZ2 78U . A . D 3 -10.441 39.637 -58.934 0.56 54.46 ? CZ2 78U 302 A 1 HETATM 26 C CZ2 78U . B . D 3 -10.508 39.584 -58.818 0.1 54.25 ? CZ2 78U 302 A 1 HETATM 27 C CE2 78U . A . D 3 -10.462 38.238 -59.126 0.56 57.61 ? CE2 78U 302 A 1 HETATM 28 C CE2 78U . B . D 3 -10.364 38.37 -59.514 0.1 55.94 ? CE2 78U 302 A 1 HETATM 29 N NE1 78U . A . D 3 -11.32 37.224 -58.702 0.56 50.62 ? NE1 78U 302 A 1 HETATM 30 N NE1 78U . B . D 3 -11.141 37.236 -59.568 0.1 53.16 ? NE1 78U 302 A 1 HETATM 31 C CD1 78U . A . D 3 -10.851 36.047 -59.184 0.56 54.26 ? CD1 78U 302 A 1 HETATM 32 C CD1 78U . B . D 3 -10.538 36.357 -60.409 0.1 55.07 ? CD1 78U 302 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #