data_8VYY
#
_model_server_result.job_id            LlQJM4G8oYHMnol_0wY0og 
_model_server_result.datetime_utc      '2025-06-28 09:59:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vyy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    8VYY 
#
_exptl.entry_id    8VYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              218.252 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            (betaS)-beta-methyl-L-tryptophan 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VYY 
_cell.length_a            196.119 
_cell.length_b            196.119 
_cell.length_c            113.06 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -113.06 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 203 A HIS 201 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc2 B NE2 HIS 203 B HIS 201 1_555 E FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
#
_chem_comp.formula           'C12 H14 N2 O2' 
_chem_comp.formula_weight    218.252 
_chem_comp.id                78U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (betaS)-beta-methyl-L-tryptophan 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C 78U doub 1 n n 
C OXT 78U sing 2 n n 
C CA 78U sing 3 n n 
CA CB 78U sing 4 n n 
CA N 78U sing 5 n n 
CB CAG 78U sing 6 n n 
CB CG 78U sing 7 n n 
CD1 CG 78U doub 8 n y 
CD1 NE1 78U sing 9 n y 
CG CD2 78U sing 10 n y 
NE1 CE2 78U sing 11 n y 
CD2 CE2 78U doub 12 n y 
CD2 CE3 78U sing 13 n y 
CE2 CZ2 78U sing 14 n y 
CE3 CZ3 78U doub 15 n y 
CZ2 CH2 78U doub 16 n y 
CZ3 CH2 78U sing 17 n y 
OXT H1 78U sing 18 n n 
CA H2 78U sing 19 n n 
N H3 78U sing 20 n n 
N H4 78U sing 21 n n 
CB H6 78U sing 22 n n 
CAG H7 78U sing 23 n n 
CAG H8 78U sing 24 n n 
CAG H9 78U sing 25 n n 
CE3 H10 78U sing 26 n n 
CZ3 H11 78U sing 27 n n 
CH2 H12 78U sing 28 n n 
CZ2 H13 78U sing 29 n n 
NE1 H14 78U sing 30 n n 
CD1 H15 78U sing 31 n n 
#
_atom_sites.entry_id                     8VYY 
_atom_sites.fract_transf_matrix[1][1]    0.005099 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005099 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 301 301 HEM HEM . 
D 3 78U A 1 302 401 78U 78U . 
E 2 HEM B 1 301 301 HEM HEM . 
F 3 78U B 1 302 401 78U 78U . 
G 4 HOH A 1 401 75 HOH HOH . 
G 4 HOH A 2 402 34 HOH HOH . 
G 4 HOH A 3 403 42 HOH HOH . 
G 4 HOH A 4 404 61 HOH HOH . 
G 4 HOH A 5 405 67 HOH HOH . 
G 4 HOH A 6 406 26 HOH HOH . 
G 4 HOH A 7 407 78 HOH HOH . 
G 4 HOH A 8 408 23 HOH HOH . 
G 4 HOH A 9 409 25 HOH HOH . 
G 4 HOH A 10 410 7 HOH HOH . 
G 4 HOH A 11 411 16 HOH HOH . 
G 4 HOH A 12 412 8 HOH HOH . 
G 4 HOH A 13 413 13 HOH HOH . 
G 4 HOH A 14 414 82 HOH HOH . 
G 4 HOH A 15 415 37 HOH HOH . 
G 4 HOH A 16 416 14 HOH HOH . 
G 4 HOH A 17 417 60 HOH HOH . 
G 4 HOH A 18 418 79 HOH HOH . 
G 4 HOH A 19 419 74 HOH HOH . 
G 4 HOH A 20 420 2 HOH HOH . 
G 4 HOH A 21 421 31 HOH HOH . 
G 4 HOH A 22 422 3 HOH HOH . 
G 4 HOH A 23 423 28 HOH HOH . 
G 4 HOH A 24 424 71 HOH HOH . 
G 4 HOH A 25 425 38 HOH HOH . 
G 4 HOH A 26 426 54 HOH HOH . 
G 4 HOH A 27 427 86 HOH HOH . 
G 4 HOH A 28 428 73 HOH HOH . 
G 4 HOH A 29 429 49 HOH HOH . 
G 4 HOH A 30 430 24 HOH HOH . 
G 4 HOH A 31 431 35 HOH HOH . 
G 4 HOH A 32 432 48 HOH HOH . 
G 4 HOH A 33 433 97 HOH HOH . 
G 4 HOH A 34 434 77 HOH HOH . 
G 4 HOH A 35 435 80 HOH HOH . 
G 4 HOH A 36 436 18 HOH HOH . 
G 4 HOH A 37 437 32 HOH HOH . 
G 4 HOH A 38 438 72 HOH HOH . 
G 4 HOH A 39 439 91 HOH HOH . 
G 4 HOH A 40 440 92 HOH HOH . 
G 4 HOH A 41 441 94 HOH HOH . 
G 4 HOH A 42 442 89 HOH HOH . 
G 4 HOH A 43 443 93 HOH HOH . 
G 4 HOH A 44 444 76 HOH HOH . 
G 4 HOH A 45 445 90 HOH HOH . 
G 4 HOH A 46 446 84 HOH HOH . 
G 4 HOH A 47 447 81 HOH HOH . 
H 4 HOH B 1 401 56 HOH HOH . 
H 4 HOH B 2 402 36 HOH HOH . 
H 4 HOH B 3 403 27 HOH HOH . 
H 4 HOH B 4 404 88 HOH HOH . 
H 4 HOH B 5 405 4 HOH HOH . 
H 4 HOH B 6 406 17 HOH HOH . 
H 4 HOH B 7 407 5 HOH HOH . 
H 4 HOH B 8 408 11 HOH HOH . 
H 4 HOH B 9 409 12 HOH HOH . 
H 4 HOH B 10 410 50 HOH HOH . 
H 4 HOH B 11 411 65 HOH HOH . 
H 4 HOH B 12 412 39 HOH HOH . 
H 4 HOH B 13 413 29 HOH HOH . 
H 4 HOH B 14 414 51 HOH HOH . 
H 4 HOH B 15 415 66 HOH HOH . 
H 4 HOH B 16 416 20 HOH HOH . 
H 4 HOH B 17 417 1 HOH HOH . 
H 4 HOH B 18 418 45 HOH HOH . 
H 4 HOH B 19 419 15 HOH HOH . 
H 4 HOH B 20 420 52 HOH HOH . 
H 4 HOH B 21 421 6 HOH HOH . 
H 4 HOH B 22 422 41 HOH HOH . 
H 4 HOH B 23 423 19 HOH HOH . 
H 4 HOH B 24 424 63 HOH HOH . 
H 4 HOH B 25 425 64 HOH HOH . 
H 4 HOH B 26 426 68 HOH HOH . 
H 4 HOH B 27 427 59 HOH HOH . 
H 4 HOH B 28 428 43 HOH HOH . 
H 4 HOH B 29 429 55 HOH HOH . 
H 4 HOH B 30 430 47 HOH HOH . 
H 4 HOH B 31 431 62 HOH HOH . 
H 4 HOH B 32 432 10 HOH HOH . 
H 4 HOH B 33 433 40 HOH HOH . 
H 4 HOH B 34 434 30 HOH HOH . 
H 4 HOH B 35 435 21 HOH HOH . 
H 4 HOH B 36 436 83 HOH HOH . 
H 4 HOH B 37 437 44 HOH HOH . 
H 4 HOH B 38 438 58 HOH HOH . 
H 4 HOH B 39 439 85 HOH HOH . 
H 4 HOH B 40 440 57 HOH HOH . 
H 4 HOH B 41 441 22 HOH HOH . 
H 4 HOH B 42 442 33 HOH HOH . 
H 4 HOH B 43 443 98 HOH HOH . 
H 4 HOH B 44 444 69 HOH HOH . 
H 4 HOH B 45 445 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OXT 78U . . . F 3 -37.786 59.483 -45.711 0.75 68.59 ? OXT 78U 302 B 1 
HETATM 2 C C 78U . . . F 3 -37.188 58.619 -44.999 0.75 73.69 ? C 78U 302 B 1 
HETATM 3 O O 78U . . . F 3 -37.804 58.113 -44.02 0.75 71.44 ? O 78U 302 B 1 
HETATM 4 C CA 78U . . . F 3 -35.725 58.194 -45.261 0.75 76.74 ? CA 78U 302 B 1 
HETATM 5 N N 78U . . . F 3 -35.299 57.256 -44.218 0.75 69.57 ? N 78U 302 B 1 
HETATM 6 C CB 78U . . . F 3 -35.525 57.547 -46.645 0.75 70.85 ? CB 78U 302 B 1 
HETATM 7 C CAG 78U . . . F 3 -35.898 58.464 -47.82 0.75 60.88 ? CAG 78U 302 B 1 
HETATM 8 C CG 78U . . . F 3 -34.041 57.208 -46.825 0.75 73.21 ? CG 78U 302 B 1 
HETATM 9 C CD2 78U . . . F 3 -32.721 57.362 -46.496 0.75 69.51 ? CD2 78U 302 B 1 
HETATM 10 C CE3 78U . . . F 3 -32.063 58.139 -45.526 0.75 74.41 ? CE3 78U 302 B 1 
HETATM 11 C CZ3 78U . . . F 3 -30.682 58.093 -45.397 0.75 70.73 ? CZ3 78U 302 B 1 
HETATM 12 C CH2 78U . . . F 3 -29.93 57.293 -46.231 0.75 59.57 ? CH2 78U 302 B 1 
HETATM 13 C CZ2 78U . . . F 3 -30.582 56.528 -47.18 0.75 62 ? CZ2 78U 302 B 1 
HETATM 14 C CE2 78U . . . F 3 -31.988 56.557 -47.318 0.75 61.87 ? CE2 78U 302 B 1 
HETATM 15 N NE1 78U . . . F 3 -32.862 55.902 -48.166 0.75 57.3 ? NE1 78U 302 B 1 
HETATM 16 C CD1 78U . . . F 3 -34.126 56.306 -47.877 0.75 62.58 ? CD1 78U 302 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#