data_8VZ7 # _model_server_result.job_id 5SfRzavNNY6D8IX70uiC-g _model_server_result.datetime_utc '2025-06-20 08:22:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 8VZ7 # _exptl.entry_id 8VZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VZ7 _cell.length_a 74.89 _cell.length_b 142.17 _cell.length_c 163.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 435 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.249 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id FRU _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-fructose;D-fructose;fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FRU sing 83 n n C1 O1 FRU sing 84 n n C1 H11 FRU sing 85 n n C1 H12 FRU sing 86 n n C2 C3 FRU sing 87 n n C2 O2 FRU sing 88 n n C2 O5 FRU sing 89 n n C3 C4 FRU sing 90 n n C3 O3 FRU sing 91 n n C3 H3 FRU sing 92 n n C4 C5 FRU sing 93 n n C4 O4 FRU sing 94 n n C4 H4 FRU sing 95 n n C5 C6 FRU sing 96 n n C5 O5 FRU sing 97 n n C5 H5 FRU sing 98 n n C6 O6 FRU sing 99 n n C6 H61 FRU sing 100 n n C6 H62 FRU sing 101 n n O1 HO1 FRU sing 102 n n O2 HO2 FRU sing 103 n n O3 HO3 FRU sing 104 n n O4 HO4 FRU sing 105 n n O6 HO6 FRU sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FRU DFrufb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FRU b-D-fructofuranose 'COMMON NAME' GMML 1 FRU b-D-Fruf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FRU Fru 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8VZ7 _atom_sites.fract_transf_matrix[1][1] 0.013353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 504 HEM HEM . C 3 LSN A 1 502 501 LSN lsn . D 3 LSN A 1 503 502 LSN lsn . E 4 FRU A 1 504 503 FRU SUC . F 5 K A 1 505 1 K K . G 6 HOH A 1 601 33 HOH HOH . G 6 HOH A 2 602 384 HOH HOH . G 6 HOH A 3 603 310 HOH HOH . G 6 HOH A 4 604 215 HOH HOH . G 6 HOH A 5 605 334 HOH HOH . G 6 HOH A 6 606 109 HOH HOH . G 6 HOH A 7 607 292 HOH HOH . G 6 HOH A 8 608 180 HOH HOH . G 6 HOH A 9 609 122 HOH HOH . G 6 HOH A 10 610 197 HOH HOH . G 6 HOH A 11 611 280 HOH HOH . G 6 HOH A 12 612 166 HOH HOH . G 6 HOH A 13 613 82 HOH HOH . G 6 HOH A 14 614 8 HOH HOH . G 6 HOH A 15 615 11 HOH HOH . G 6 HOH A 16 616 28 HOH HOH . G 6 HOH A 17 617 69 HOH HOH . G 6 HOH A 18 618 104 HOH HOH . G 6 HOH A 19 619 16 HOH HOH . G 6 HOH A 20 620 45 HOH HOH . G 6 HOH A 21 621 49 HOH HOH . G 6 HOH A 22 622 62 HOH HOH . G 6 HOH A 23 623 99 HOH HOH . G 6 HOH A 24 624 219 HOH HOH . G 6 HOH A 25 625 304 HOH HOH . G 6 HOH A 26 626 174 HOH HOH . G 6 HOH A 27 627 91 HOH HOH . G 6 HOH A 28 628 20 HOH HOH . G 6 HOH A 29 629 27 HOH HOH . G 6 HOH A 30 630 118 HOH HOH . G 6 HOH A 31 631 160 HOH HOH . G 6 HOH A 32 632 63 HOH HOH . G 6 HOH A 33 633 164 HOH HOH . G 6 HOH A 34 634 120 HOH HOH . G 6 HOH A 35 635 210 HOH HOH . G 6 HOH A 36 636 72 HOH HOH . G 6 HOH A 37 637 73 HOH HOH . G 6 HOH A 38 638 30 HOH HOH . G 6 HOH A 39 639 173 HOH HOH . G 6 HOH A 40 640 115 HOH HOH . G 6 HOH A 41 641 86 HOH HOH . G 6 HOH A 42 642 67 HOH HOH . G 6 HOH A 43 643 204 HOH HOH . G 6 HOH A 44 644 181 HOH HOH . G 6 HOH A 45 645 89 HOH HOH . G 6 HOH A 46 646 13 HOH HOH . G 6 HOH A 47 647 177 HOH HOH . G 6 HOH A 48 648 57 HOH HOH . G 6 HOH A 49 649 107 HOH HOH . G 6 HOH A 50 650 70 HOH HOH . G 6 HOH A 51 651 51 HOH HOH . G 6 HOH A 52 652 223 HOH HOH . G 6 HOH A 53 653 300 HOH HOH . G 6 HOH A 54 654 134 HOH HOH . G 6 HOH A 55 655 279 HOH HOH . G 6 HOH A 56 656 379 HOH HOH . G 6 HOH A 57 657 198 HOH HOH . G 6 HOH A 58 658 103 HOH HOH . G 6 HOH A 59 659 59 HOH HOH . G 6 HOH A 60 660 211 HOH HOH . G 6 HOH A 61 661 10 HOH HOH . G 6 HOH A 62 662 48 HOH HOH . G 6 HOH A 63 663 405 HOH HOH . G 6 HOH A 64 664 29 HOH HOH . G 6 HOH A 65 665 132 HOH HOH . G 6 HOH A 66 666 325 HOH HOH . G 6 HOH A 67 667 194 HOH HOH . G 6 HOH A 68 668 163 HOH HOH . G 6 HOH A 69 669 14 HOH HOH . G 6 HOH A 70 670 336 HOH HOH . G 6 HOH A 71 671 90 HOH HOH . G 6 HOH A 72 672 88 HOH HOH . G 6 HOH A 73 673 119 HOH HOH . G 6 HOH A 74 674 407 HOH HOH . G 6 HOH A 75 675 226 HOH HOH . G 6 HOH A 76 676 299 HOH HOH . G 6 HOH A 77 677 220 HOH HOH . G 6 HOH A 78 678 222 HOH HOH . G 6 HOH A 79 679 200 HOH HOH . G 6 HOH A 80 680 19 HOH HOH . G 6 HOH A 81 681 175 HOH HOH . G 6 HOH A 82 682 65 HOH HOH . G 6 HOH A 83 683 168 HOH HOH . G 6 HOH A 84 684 311 HOH HOH . G 6 HOH A 85 685 284 HOH HOH . G 6 HOH A 86 686 346 HOH HOH . G 6 HOH A 87 687 371 HOH HOH . G 6 HOH A 88 688 102 HOH HOH . G 6 HOH A 89 689 277 HOH HOH . G 6 HOH A 90 690 207 HOH HOH . G 6 HOH A 91 691 81 HOH HOH . G 6 HOH A 92 692 129 HOH HOH . G 6 HOH A 93 693 54 HOH HOH . G 6 HOH A 94 694 217 HOH HOH . G 6 HOH A 95 695 206 HOH HOH . G 6 HOH A 96 696 21 HOH HOH . G 6 HOH A 97 697 324 HOH HOH . G 6 HOH A 98 698 74 HOH HOH . G 6 HOH A 99 699 136 HOH HOH . G 6 HOH A 100 700 340 HOH HOH . G 6 HOH A 101 701 85 HOH HOH . G 6 HOH A 102 702 23 HOH HOH . G 6 HOH A 103 703 266 HOH HOH . G 6 HOH A 104 704 225 HOH HOH . G 6 HOH A 105 705 331 HOH HOH . G 6 HOH A 106 706 172 HOH HOH . G 6 HOH A 107 707 110 HOH HOH . G 6 HOH A 108 708 113 HOH HOH . G 6 HOH A 109 709 116 HOH HOH . G 6 HOH A 110 710 301 HOH HOH . G 6 HOH A 111 711 162 HOH HOH . G 6 HOH A 112 712 135 HOH HOH . G 6 HOH A 113 713 259 HOH HOH . G 6 HOH A 114 714 370 HOH HOH . G 6 HOH A 115 715 281 HOH HOH . G 6 HOH A 116 716 121 HOH HOH . G 6 HOH A 117 717 323 HOH HOH . G 6 HOH A 118 718 216 HOH HOH . G 6 HOH A 119 719 377 HOH HOH . G 6 HOH A 120 720 165 HOH HOH . G 6 HOH A 121 721 131 HOH HOH . G 6 HOH A 122 722 147 HOH HOH . G 6 HOH A 123 723 303 HOH HOH . G 6 HOH A 124 724 432 HOH HOH . G 6 HOH A 125 725 419 HOH HOH . G 6 HOH A 126 726 170 HOH HOH . G 6 HOH A 127 727 430 HOH HOH . G 6 HOH A 128 728 282 HOH HOH . G 6 HOH A 129 729 108 HOH HOH . G 6 HOH A 130 730 265 HOH HOH . G 6 HOH A 131 731 139 HOH HOH . G 6 HOH A 132 732 201 HOH HOH . G 6 HOH A 133 733 381 HOH HOH . G 6 HOH A 134 734 424 HOH HOH . G 6 HOH A 135 735 239 HOH HOH . G 6 HOH A 136 736 184 HOH HOH . G 6 HOH A 137 737 221 HOH HOH . G 6 HOH A 138 738 218 HOH HOH . G 6 HOH A 139 739 214 HOH HOH . G 6 HOH A 140 740 158 HOH HOH . G 6 HOH A 141 741 205 HOH HOH . G 6 HOH A 142 742 313 HOH HOH . G 6 HOH A 143 743 243 HOH HOH . G 6 HOH A 144 744 283 HOH HOH . G 6 HOH A 145 745 306 HOH HOH . G 6 HOH A 146 746 186 HOH HOH . G 6 HOH A 147 747 193 HOH HOH . G 6 HOH A 148 748 261 HOH HOH . G 6 HOH A 149 749 376 HOH HOH . G 6 HOH A 150 750 171 HOH HOH . G 6 HOH A 151 751 428 HOH HOH . G 6 HOH A 152 752 308 HOH HOH . G 6 HOH A 153 753 349 HOH HOH . G 6 HOH A 154 754 339 HOH HOH . G 6 HOH A 155 755 372 HOH HOH . G 6 HOH A 156 756 231 HOH HOH . G 6 HOH A 157 757 328 HOH HOH . G 6 HOH A 158 758 326 HOH HOH . G 6 HOH A 159 759 114 HOH HOH . G 6 HOH A 160 760 179 HOH HOH . G 6 HOH A 161 761 250 HOH HOH . G 6 HOH A 162 762 209 HOH HOH . G 6 HOH A 163 763 302 HOH HOH . G 6 HOH A 164 764 249 HOH HOH . G 6 HOH A 165 765 431 HOH HOH . G 6 HOH A 166 766 309 HOH HOH . G 6 HOH A 167 767 248 HOH HOH . G 6 HOH A 168 768 213 HOH HOH . G 6 HOH A 169 769 351 HOH HOH . G 6 HOH A 170 770 252 HOH HOH . G 6 HOH A 171 771 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FRU . . . E 4 -12.93 -4.182 -7.361 1 98.91 ? C1 FRU 504 A 1 HETATM 2 C C2 FRU . . . E 4 -13.867 -5.335 -7.484 1 104.32 ? C2 FRU 504 A 1 HETATM 3 C C3 FRU . . . E 4 -14.461 -5.518 -8.859 1 119.07 ? C3 FRU 504 A 1 HETATM 4 C C4 FRU . . . E 4 -15.795 -6.166 -8.564 1 117.81 ? C4 FRU 504 A 1 HETATM 5 C C5 FRU . . . E 4 -16.168 -5.51 -7.252 1 114.47 ? C5 FRU 504 A 1 HETATM 6 C C6 FRU . . . E 4 -17.101 -6.357 -6.405 1 109.9 ? C6 FRU 504 A 1 HETATM 7 O O1 FRU . . . E 4 -11.68 -4.852 -7.241 1 73.14 ? O1 FRU 504 A 1 HETATM 8 O O2 FRU . . . E 4 -12.987 -6.388 -7.213 1 127.96 ? O2 FRU 504 A 1 HETATM 9 O O3 FRU . . . E 4 -13.612 -6.33 -9.674 1 120.28 ? O3 FRU 504 A 1 HETATM 10 O O4 FRU . . . E 4 -16.768 -5.906 -9.582 1 95.28 ? O4 FRU 504 A 1 HETATM 11 O O5 FRU . . . E 4 -14.94 -5.299 -6.559 1 109.41 ? O5 FRU 504 A 1 HETATM 12 O O6 FRU . . . E 4 -18.082 -7.032 -7.191 1 90.56 ? O6 FRU 504 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #