data_8VZG # _model_server_result.job_id 1T-fr7EW6DrV3v1BPyAzww _model_server_result.datetime_utc '2025-06-27 23:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vzg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8VZG # _exptl.entry_id 8VZG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VZG _cell.length_a 42.534 _cell.length_b 69.042 _cell.length_c 80.075 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VZG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 4 A HIS 4 1_555 H ZN ZN . A ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A NE2 HIS 36 A HIS 36 1_555 H ZN ZN . A ZN 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A NE2 HIS 64 A HIS 64 1_555 H ZN ZN . A ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 A NE2 HIS 94 A HIS 94 1_555 G ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A NE2 HIS 96 A HIS 96 1_555 G ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc6 A ND1 HIS 119 A HIS 119 1_555 G ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 B N1 AZM . A AZM 301 1_555 G ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc8 C OA2 FLC . A FLC 302 1_555 H ZN ZN . A ZN 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 102 n n CAC OA1 FLC doub 103 n n CAC OA2 FLC sing 104 n n CA CB FLC sing 105 n n CA HA1 FLC sing 106 n n CA HA2 FLC sing 107 n n CB CBC FLC sing 108 n n CB CG FLC sing 109 n n CB OHB FLC sing 110 n n CBC OB1 FLC doub 111 n n CBC OB2 FLC sing 112 n n CG CGC FLC sing 113 n n CG HG1 FLC sing 114 n n CG HG2 FLC sing 115 n n CGC OG1 FLC doub 116 n n CGC OG2 FLC sing 117 n n OHB HOB FLC sing 118 n n # _atom_sites.entry_id 8VZG _atom_sites.fract_transf_matrix[1][1] 0.023511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZM A 1 301 301 AZM AZM . C 3 FLC A 1 302 401 FLC FLC . D 4 GOL A 1 303 501 GOL GOL . E 4 GOL A 1 304 601 GOL GOL . F 4 GOL A 1 305 701 GOL GOL . G 5 ZN A 1 306 1 ZN ZN . H 5 ZN A 1 307 2 ZN ZN . I 6 HOH A 1 401 4 HOH HOH . I 6 HOH A 2 402 90 HOH HOH . I 6 HOH A 3 403 144 HOH HOH . I 6 HOH A 4 404 220 HOH HOH . I 6 HOH A 5 405 125 HOH HOH . I 6 HOH A 6 406 166 HOH HOH . I 6 HOH A 7 407 85 HOH HOH . I 6 HOH A 8 408 123 HOH HOH . I 6 HOH A 9 409 164 HOH HOH . I 6 HOH A 10 410 143 HOH HOH . I 6 HOH A 11 411 291 HOH HOH . I 6 HOH A 12 412 175 HOH HOH . I 6 HOH A 13 413 82 HOH HOH . I 6 HOH A 14 414 95 HOH HOH . I 6 HOH A 15 415 133 HOH HOH . I 6 HOH A 16 416 157 HOH HOH . I 6 HOH A 17 417 53 HOH HOH . I 6 HOH A 18 418 45 HOH HOH . I 6 HOH A 19 419 107 HOH HOH . I 6 HOH A 20 420 171 HOH HOH . I 6 HOH A 21 421 7 HOH HOH . I 6 HOH A 22 422 59 HOH HOH . I 6 HOH A 23 423 252 HOH HOH . I 6 HOH A 24 424 191 HOH HOH . I 6 HOH A 25 425 134 HOH HOH . I 6 HOH A 26 426 129 HOH HOH . I 6 HOH A 27 427 110 HOH HOH . I 6 HOH A 28 428 36 HOH HOH . I 6 HOH A 29 429 260 HOH HOH . I 6 HOH A 30 430 151 HOH HOH . I 6 HOH A 31 431 56 HOH HOH . I 6 HOH A 32 432 122 HOH HOH . I 6 HOH A 33 433 185 HOH HOH . I 6 HOH A 34 434 183 HOH HOH . I 6 HOH A 35 435 245 HOH HOH . I 6 HOH A 36 436 211 HOH HOH . I 6 HOH A 37 437 195 HOH HOH . I 6 HOH A 38 438 21 HOH HOH . I 6 HOH A 39 439 73 HOH HOH . I 6 HOH A 40 440 139 HOH HOH . I 6 HOH A 41 441 65 HOH HOH . I 6 HOH A 42 442 96 HOH HOH . I 6 HOH A 43 443 30 HOH HOH . I 6 HOH A 44 444 10 HOH HOH . I 6 HOH A 45 445 46 HOH HOH . I 6 HOH A 46 446 316 HOH HOH . I 6 HOH A 47 447 109 HOH HOH . I 6 HOH A 48 448 34 HOH HOH . I 6 HOH A 49 449 17 HOH HOH . I 6 HOH A 50 450 114 HOH HOH . I 6 HOH A 51 451 80 HOH HOH . I 6 HOH A 52 452 70 HOH HOH . I 6 HOH A 53 453 67 HOH HOH . I 6 HOH A 54 454 16 HOH HOH . I 6 HOH A 55 455 1 HOH HOH . I 6 HOH A 56 456 76 HOH HOH . I 6 HOH A 57 457 42 HOH HOH . I 6 HOH A 58 458 177 HOH HOH . I 6 HOH A 59 459 176 HOH HOH . I 6 HOH A 60 460 170 HOH HOH . I 6 HOH A 61 461 150 HOH HOH . I 6 HOH A 62 462 14 HOH HOH . I 6 HOH A 63 463 223 HOH HOH . I 6 HOH A 64 464 165 HOH HOH . I 6 HOH A 65 465 94 HOH HOH . I 6 HOH A 66 466 3 HOH HOH . I 6 HOH A 67 467 97 HOH HOH . I 6 HOH A 68 468 39 HOH HOH . I 6 HOH A 69 469 182 HOH HOH . I 6 HOH A 70 470 181 HOH HOH . I 6 HOH A 71 471 162 HOH HOH . I 6 HOH A 72 472 145 HOH HOH . I 6 HOH A 73 473 103 HOH HOH . I 6 HOH A 74 474 57 HOH HOH . I 6 HOH A 75 475 60 HOH HOH . I 6 HOH A 76 476 75 HOH HOH . I 6 HOH A 77 477 28 HOH HOH . I 6 HOH A 78 478 2 HOH HOH . I 6 HOH A 79 479 120 HOH HOH . I 6 HOH A 80 480 38 HOH HOH . I 6 HOH A 81 481 33 HOH HOH . I 6 HOH A 82 482 58 HOH HOH . I 6 HOH A 83 483 18 HOH HOH . I 6 HOH A 84 484 285 HOH HOH . I 6 HOH A 85 485 55 HOH HOH . I 6 HOH A 86 486 27 HOH HOH . I 6 HOH A 87 487 137 HOH HOH . I 6 HOH A 88 488 48 HOH HOH . I 6 HOH A 89 489 31 HOH HOH . I 6 HOH A 90 490 163 HOH HOH . I 6 HOH A 91 491 187 HOH HOH . I 6 HOH A 92 492 233 HOH HOH . I 6 HOH A 93 493 22 HOH HOH . I 6 HOH A 94 494 115 HOH HOH . I 6 HOH A 95 495 6 HOH HOH . I 6 HOH A 96 496 13 HOH HOH . I 6 HOH A 97 497 135 HOH HOH . I 6 HOH A 98 498 102 HOH HOH . I 6 HOH A 99 499 68 HOH HOH . I 6 HOH A 100 500 106 HOH HOH . I 6 HOH A 101 501 197 HOH HOH . I 6 HOH A 102 502 40 HOH HOH . I 6 HOH A 103 503 25 HOH HOH . I 6 HOH A 104 504 71 HOH HOH . I 6 HOH A 105 505 226 HOH HOH . I 6 HOH A 106 506 47 HOH HOH . I 6 HOH A 107 507 74 HOH HOH . I 6 HOH A 108 508 83 HOH HOH . I 6 HOH A 109 509 49 HOH HOH . I 6 HOH A 110 510 147 HOH HOH . I 6 HOH A 111 511 64 HOH HOH . I 6 HOH A 112 512 23 HOH HOH . I 6 HOH A 113 513 212 HOH HOH . I 6 HOH A 114 514 159 HOH HOH . I 6 HOH A 115 515 44 HOH HOH . I 6 HOH A 116 516 86 HOH HOH . I 6 HOH A 117 517 54 HOH HOH . I 6 HOH A 118 518 99 HOH HOH . I 6 HOH A 119 519 43 HOH HOH . I 6 HOH A 120 520 20 HOH HOH . I 6 HOH A 121 521 112 HOH HOH . I 6 HOH A 122 522 121 HOH HOH . I 6 HOH A 123 523 24 HOH HOH . I 6 HOH A 124 524 66 HOH HOH . I 6 HOH A 125 525 91 HOH HOH . I 6 HOH A 126 526 259 HOH HOH . I 6 HOH A 127 527 237 HOH HOH . I 6 HOH A 128 528 78 HOH HOH . I 6 HOH A 129 529 69 HOH HOH . I 6 HOH A 130 530 104 HOH HOH . I 6 HOH A 131 531 126 HOH HOH . I 6 HOH A 132 532 142 HOH HOH . I 6 HOH A 133 533 160 HOH HOH . I 6 HOH A 134 534 136 HOH HOH . I 6 HOH A 135 535 41 HOH HOH . I 6 HOH A 136 536 190 HOH HOH . I 6 HOH A 137 537 184 HOH HOH . I 6 HOH A 138 538 15 HOH HOH . I 6 HOH A 139 539 230 HOH HOH . I 6 HOH A 140 540 63 HOH HOH . I 6 HOH A 141 541 141 HOH HOH . I 6 HOH A 142 542 19 HOH HOH . I 6 HOH A 143 543 188 HOH HOH . I 6 HOH A 144 544 79 HOH HOH . I 6 HOH A 145 545 118 HOH HOH . I 6 HOH A 146 546 189 HOH HOH . I 6 HOH A 147 547 32 HOH HOH . I 6 HOH A 148 548 35 HOH HOH . I 6 HOH A 149 549 276 HOH HOH . I 6 HOH A 150 550 192 HOH HOH . I 6 HOH A 151 551 9 HOH HOH . I 6 HOH A 152 552 11 HOH HOH . I 6 HOH A 153 553 77 HOH HOH . I 6 HOH A 154 554 266 HOH HOH . I 6 HOH A 155 555 100 HOH HOH . I 6 HOH A 156 556 29 HOH HOH . I 6 HOH A 157 557 50 HOH HOH . I 6 HOH A 158 558 149 HOH HOH . I 6 HOH A 159 559 37 HOH HOH . I 6 HOH A 160 560 8 HOH HOH . I 6 HOH A 161 561 208 HOH HOH . I 6 HOH A 162 562 62 HOH HOH . I 6 HOH A 163 563 148 HOH HOH . I 6 HOH A 164 564 12 HOH HOH . I 6 HOH A 165 565 26 HOH HOH . I 6 HOH A 166 566 98 HOH HOH . I 6 HOH A 167 567 315 HOH HOH . I 6 HOH A 168 568 140 HOH HOH . I 6 HOH A 169 569 84 HOH HOH . I 6 HOH A 170 570 306 HOH HOH . I 6 HOH A 171 571 278 HOH HOH . I 6 HOH A 172 572 92 HOH HOH . I 6 HOH A 173 573 193 HOH HOH . I 6 HOH A 174 574 313 HOH HOH . I 6 HOH A 175 575 168 HOH HOH . I 6 HOH A 176 576 5 HOH HOH . I 6 HOH A 177 577 72 HOH HOH . I 6 HOH A 178 578 152 HOH HOH . I 6 HOH A 179 579 179 HOH HOH . I 6 HOH A 180 580 127 HOH HOH . I 6 HOH A 181 581 119 HOH HOH . I 6 HOH A 182 582 180 HOH HOH . I 6 HOH A 183 583 216 HOH HOH . I 6 HOH A 184 584 87 HOH HOH . I 6 HOH A 185 585 202 HOH HOH . I 6 HOH A 186 586 329 HOH HOH . I 6 HOH A 187 587 61 HOH HOH . I 6 HOH A 188 588 327 HOH HOH . I 6 HOH A 189 589 201 HOH HOH . I 6 HOH A 190 590 322 HOH HOH . I 6 HOH A 191 591 317 HOH HOH . I 6 HOH A 192 592 240 HOH HOH . I 6 HOH A 193 593 117 HOH HOH . I 6 HOH A 194 594 210 HOH HOH . I 6 HOH A 195 595 296 HOH HOH . I 6 HOH A 196 596 321 HOH HOH . I 6 HOH A 197 597 320 HOH HOH . I 6 HOH A 198 598 336 HOH HOH . I 6 HOH A 199 599 248 HOH HOH . I 6 HOH A 200 600 257 HOH HOH . I 6 HOH A 201 601 318 HOH HOH . I 6 HOH A 202 602 254 HOH HOH . I 6 HOH A 203 603 265 HOH HOH . I 6 HOH A 204 604 328 HOH HOH . I 6 HOH A 205 605 214 HOH HOH . I 6 HOH A 206 606 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . C 3 8.214 34.097 23.412 1 24.72 0 CAC FLC 302 A 1 HETATM 2 C CA FLC . . . C 3 8.249 33.941 21.901 1 23.97 0 CA FLC 302 A 1 HETATM 3 C CB FLC . . . C 3 9.611 33.542 21.336 1 26.4 0 CB FLC 302 A 1 HETATM 4 C CBC FLC . . . C 3 10.201 32.339 22.126 1 28.2 0 CBC FLC 302 A 1 HETATM 5 C CG FLC . . . C 3 9.442 33.122 19.868 1 28.55 0 CG FLC 302 A 1 HETATM 6 C CGC FLC . . . C 3 10.736 32.941 19.088 1 34.19 0 CGC FLC 302 A 1 HETATM 7 O OA1 FLC . . . C 3 7.12 34.181 23.914 1 19.89 0 OA1 FLC 302 A 1 HETATM 8 O OA2 FLC . . . C 3 9.3 34.125 24.043 1 18.67 0 OA2 FLC 302 A 1 HETATM 9 O OB1 FLC . . . C 3 9.461 31.364 22.335 1 26.6 0 OB1 FLC 302 A 1 HETATM 10 O OB2 FLC . . . C 3 11.4 32.406 22.452 1 26.22 0 OB2 FLC 302 A 1 HETATM 11 O OG1 FLC . . . C 3 11.84 33.235 19.607 1 32.34 0 OG1 FLC 302 A 1 HETATM 12 O OG2 FLC . . . C 3 10.643 32.451 17.962 1 41.27 0 OG2 FLC 302 A 1 HETATM 13 O OHB FLC . . . C 3 10.484 34.663 21.416 1 27.31 0 OHB FLC 302 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #