data_8VZR
#
_model_server_result.job_id            DI6IMjWl16ERGRNd0PmoLw 
_model_server_result.datetime_utc      '2024-11-27 21:47:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vzr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":207}' 
#
_entry.id    8VZR 
#
_exptl.entry_id    8VZR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VZR 
_cell.length_a            58.404 
_cell.length_b            67.756 
_cell.length_c            68.169 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VZR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,S 1 1 
B,J,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 L N N 
? 4 M N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc2 C FE HEM . A HEM 201 1_555 H O2 OXY . A OXY 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc3 B NE2 HIS 89 B HIS 89 1_555 J FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc4 J FE HEM . B HEM 201 1_555 Q O1 OXY . B OXY 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8VZR 
_atom_sites.fract_transf_matrix[1][1]    0.017122 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014759 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 139 HEM HEM . 
D 3 MWJ A 1 202 140 MWJ MWJ . 
E 4 GOL A 1 203 141 GOL GOL . 
F 5 PEG A 1 204 142 PEG PEG . 
G 6 PG4 A 1 205 143 PG4 PG4 . 
H 7 OXY A 1 206 1 OXY OXY . 
I 8 SO4 A 1 207 2 SO4 SO4 . 
J 2 HEM B 1 201 139 HEM HEM . 
K 3 MWJ B 1 202 140 MWJ MWJ . 
L 4 GOL B 1 203 141 GOL GOL . 
M 4 GOL B 1 204 142 GOL GOL . 
N 5 PEG B 1 205 143 PEG PEG . 
O 4 GOL B 1 206 144 GOL GOL . 
P 4 GOL B 1 207 145 GOL GOL . 
Q 7 OXY B 1 208 2 OXY OXY . 
R 8 SO4 B 1 209 1 SO4 SO4 . 
S 9 HOH A 1 301 88 HOH HOH . 
S 9 HOH A 2 302 104 HOH HOH . 
S 9 HOH A 3 303 95 HOH HOH . 
S 9 HOH A 4 304 80 HOH HOH . 
S 9 HOH A 5 305 190 HOH HOH . 
S 9 HOH A 6 306 193 HOH HOH . 
S 9 HOH A 7 307 114 HOH HOH . 
S 9 HOH A 8 308 196 HOH HOH . 
S 9 HOH A 9 309 47 HOH HOH . 
S 9 HOH A 10 310 173 HOH HOH . 
S 9 HOH A 11 311 146 HOH HOH . 
S 9 HOH A 12 312 175 HOH HOH . 
S 9 HOH A 13 313 103 HOH HOH . 
S 9 HOH A 14 314 34 HOH HOH . 
S 9 HOH A 15 315 75 HOH HOH . 
S 9 HOH A 16 316 128 HOH HOH . 
S 9 HOH A 17 317 188 HOH HOH . 
S 9 HOH A 18 318 141 HOH HOH . 
S 9 HOH A 19 319 79 HOH HOH . 
S 9 HOH A 20 320 65 HOH HOH . 
S 9 HOH A 21 321 16 HOH HOH . 
S 9 HOH A 22 322 168 HOH HOH . 
S 9 HOH A 23 323 71 HOH HOH . 
S 9 HOH A 24 324 166 HOH HOH . 
S 9 HOH A 25 325 93 HOH HOH . 
S 9 HOH A 26 326 14 HOH HOH . 
S 9 HOH A 27 327 96 HOH HOH . 
S 9 HOH A 28 328 58 HOH HOH . 
S 9 HOH A 29 329 48 HOH HOH . 
S 9 HOH A 30 330 38 HOH HOH . 
S 9 HOH A 31 331 132 HOH HOH . 
S 9 HOH A 32 332 62 HOH HOH . 
S 9 HOH A 33 333 27 HOH HOH . 
S 9 HOH A 34 334 21 HOH HOH . 
S 9 HOH A 35 335 195 HOH HOH . 
S 9 HOH A 36 336 106 HOH HOH . 
S 9 HOH A 37 337 24 HOH HOH . 
S 9 HOH A 38 338 25 HOH HOH . 
S 9 HOH A 39 339 9 HOH HOH . 
S 9 HOH A 40 340 50 HOH HOH . 
S 9 HOH A 41 341 156 HOH HOH . 
S 9 HOH A 42 342 59 HOH HOH . 
S 9 HOH A 43 343 69 HOH HOH . 
S 9 HOH A 44 344 194 HOH HOH . 
S 9 HOH A 45 345 189 HOH HOH . 
S 9 HOH A 46 346 169 HOH HOH . 
S 9 HOH A 47 347 1 HOH HOH . 
S 9 HOH A 48 348 105 HOH HOH . 
S 9 HOH A 49 349 33 HOH HOH . 
S 9 HOH A 50 350 112 HOH HOH . 
S 9 HOH A 51 351 42 HOH HOH . 
S 9 HOH A 52 352 5 HOH HOH . 
S 9 HOH A 53 353 174 HOH HOH . 
S 9 HOH A 54 354 97 HOH HOH . 
S 9 HOH A 55 355 167 HOH HOH . 
S 9 HOH A 56 356 135 HOH HOH . 
S 9 HOH A 57 357 201 HOH HOH . 
S 9 HOH A 58 358 74 HOH HOH . 
S 9 HOH A 59 359 78 HOH HOH . 
S 9 HOH A 60 360 137 HOH HOH . 
S 9 HOH A 61 361 131 HOH HOH . 
S 9 HOH A 62 362 83 HOH HOH . 
S 9 HOH A 63 363 85 HOH HOH . 
S 9 HOH A 64 364 147 HOH HOH . 
S 9 HOH A 65 365 84 HOH HOH . 
S 9 HOH A 66 366 192 HOH HOH . 
S 9 HOH A 67 367 191 HOH HOH . 
S 9 HOH A 68 368 108 HOH HOH . 
S 9 HOH A 69 369 31 HOH HOH . 
S 9 HOH A 70 370 123 HOH HOH . 
S 9 HOH A 71 371 23 HOH HOH . 
S 9 HOH A 72 372 197 HOH HOH . 
S 9 HOH A 73 373 4 HOH HOH . 
S 9 HOH A 74 374 117 HOH HOH . 
S 9 HOH A 75 375 140 HOH HOH . 
S 9 HOH A 76 376 36 HOH HOH . 
S 9 HOH A 77 377 198 HOH HOH . 
S 9 HOH A 78 378 43 HOH HOH . 
S 9 HOH A 79 379 170 HOH HOH . 
S 9 HOH A 80 380 121 HOH HOH . 
S 9 HOH A 81 381 160 HOH HOH . 
S 9 HOH A 82 382 152 HOH HOH . 
S 9 HOH A 83 383 81 HOH HOH . 
S 9 HOH A 84 384 171 HOH HOH . 
S 9 HOH A 85 385 143 HOH HOH . 
S 9 HOH A 86 386 163 HOH HOH . 
S 9 HOH A 87 387 162 HOH HOH . 
S 9 HOH A 88 388 125 HOH HOH . 
S 9 HOH A 89 389 142 HOH HOH . 
S 9 HOH A 90 390 153 HOH HOH . 
S 9 HOH A 91 391 101 HOH HOH . 
T 9 HOH B 1 301 63 HOH HOH . 
T 9 HOH B 2 302 206 HOH HOH . 
T 9 HOH B 3 303 183 HOH HOH . 
T 9 HOH B 4 304 182 HOH HOH . 
T 9 HOH B 5 305 102 HOH HOH . 
T 9 HOH B 6 306 178 HOH HOH . 
T 9 HOH B 7 307 10 HOH HOH . 
T 9 HOH B 8 308 204 HOH HOH . 
T 9 HOH B 9 309 52 HOH HOH . 
T 9 HOH B 10 310 180 HOH HOH . 
T 9 HOH B 11 311 176 HOH HOH . 
T 9 HOH B 12 312 127 HOH HOH . 
T 9 HOH B 13 313 155 HOH HOH . 
T 9 HOH B 14 314 205 HOH HOH . 
T 9 HOH B 15 315 61 HOH HOH . 
T 9 HOH B 16 316 98 HOH HOH . 
T 9 HOH B 17 317 91 HOH HOH . 
T 9 HOH B 18 318 19 HOH HOH . 
T 9 HOH B 19 319 55 HOH HOH . 
T 9 HOH B 20 320 68 HOH HOH . 
T 9 HOH B 21 321 203 HOH HOH . 
T 9 HOH B 22 322 8 HOH HOH . 
T 9 HOH B 23 323 13 HOH HOH . 
T 9 HOH B 24 324 186 HOH HOH . 
T 9 HOH B 25 325 211 HOH HOH . 
T 9 HOH B 26 326 2 HOH HOH . 
T 9 HOH B 27 327 37 HOH HOH . 
T 9 HOH B 28 328 53 HOH HOH . 
T 9 HOH B 29 329 181 HOH HOH . 
T 9 HOH B 30 330 199 HOH HOH . 
T 9 HOH B 31 331 7 HOH HOH . 
T 9 HOH B 32 332 82 HOH HOH . 
T 9 HOH B 33 333 200 HOH HOH . 
T 9 HOH B 34 334 113 HOH HOH . 
T 9 HOH B 35 335 41 HOH HOH . 
T 9 HOH B 36 336 29 HOH HOH . 
T 9 HOH B 37 337 66 HOH HOH . 
T 9 HOH B 38 338 46 HOH HOH . 
T 9 HOH B 39 339 51 HOH HOH . 
T 9 HOH B 40 340 30 HOH HOH . 
T 9 HOH B 41 341 139 HOH HOH . 
T 9 HOH B 42 342 136 HOH HOH . 
T 9 HOH B 43 343 99 HOH HOH . 
T 9 HOH B 44 344 15 HOH HOH . 
T 9 HOH B 45 345 86 HOH HOH . 
T 9 HOH B 46 346 159 HOH HOH . 
T 9 HOH B 47 347 18 HOH HOH . 
T 9 HOH B 48 348 70 HOH HOH . 
T 9 HOH B 49 349 208 HOH HOH . 
T 9 HOH B 50 350 94 HOH HOH . 
T 9 HOH B 51 351 39 HOH HOH . 
T 9 HOH B 52 352 26 HOH HOH . 
T 9 HOH B 53 353 110 HOH HOH . 
T 9 HOH B 54 354 210 HOH HOH . 
T 9 HOH B 55 355 87 HOH HOH . 
T 9 HOH B 56 356 73 HOH HOH . 
T 9 HOH B 57 357 49 HOH HOH . 
T 9 HOH B 58 358 118 HOH HOH . 
T 9 HOH B 59 359 44 HOH HOH . 
T 9 HOH B 60 360 179 HOH HOH . 
T 9 HOH B 61 361 120 HOH HOH . 
T 9 HOH B 62 362 56 HOH HOH . 
T 9 HOH B 63 363 209 HOH HOH . 
T 9 HOH B 64 364 45 HOH HOH . 
T 9 HOH B 65 365 35 HOH HOH . 
T 9 HOH B 66 366 149 HOH HOH . 
T 9 HOH B 67 367 12 HOH HOH . 
T 9 HOH B 68 368 185 HOH HOH . 
T 9 HOH B 69 369 126 HOH HOH . 
T 9 HOH B 70 370 157 HOH HOH . 
T 9 HOH B 71 371 144 HOH HOH . 
T 9 HOH B 72 372 202 HOH HOH . 
T 9 HOH B 73 373 184 HOH HOH . 
T 9 HOH B 74 374 67 HOH HOH . 
T 9 HOH B 75 375 40 HOH HOH . 
T 9 HOH B 76 376 11 HOH HOH . 
T 9 HOH B 77 377 116 HOH HOH . 
T 9 HOH B 78 378 124 HOH HOH . 
T 9 HOH B 79 379 76 HOH HOH . 
T 9 HOH B 80 380 154 HOH HOH . 
T 9 HOH B 81 381 207 HOH HOH . 
T 9 HOH B 82 382 3 HOH HOH . 
T 9 HOH B 83 383 177 HOH HOH . 
T 9 HOH B 84 384 158 HOH HOH . 
T 9 HOH B 85 385 92 HOH HOH . 
T 9 HOH B 86 386 54 HOH HOH . 
T 9 HOH B 87 387 107 HOH HOH . 
T 9 HOH B 88 388 28 HOH HOH . 
T 9 HOH B 89 389 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 4 12.975 31.44 -5.254 1 32.57 0 C1 GOL 207 B 1 
HETATM 2 O O1 GOL . . . P 4 11.926 30.557 -4.877 1 28.06 0 O1 GOL 207 B 1 
HETATM 3 C C2 GOL . . . P 4 14 30.66 -6.044 1 36.96 0 C2 GOL 207 B 1 
HETATM 4 O O2 GOL . . . P 4 15.186 30.477 -5.26 1 44.5 0 O2 GOL 207 B 1 
HETATM 5 C C3 GOL . . . P 4 13.414 29.328 -6.471 1 33.9 0 C3 GOL 207 B 1 
HETATM 6 O O3 GOL . . . P 4 14.379 28.446 -7.007 1 41.6 0 O3 GOL 207 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#