data_8VZY # _model_server_result.job_id nAycS4LE6PDy-APCV5VEwg _model_server_result.datetime_utc '2024-12-23 12:10:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8VZY # _exptl.entry_id 8VZY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.377 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.51 _cell.angle_beta 90.49 _cell.angle_gamma 111.72 _cell.entry_id 8VZY _cell.length_a 32.289 _cell.length_b 35.252 _cell.length_c 64.872 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VZY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C17 _struct_conn.ptnr2_label_comp_id A1AEQ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1AEQ _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.268 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H17 N O S' _chem_comp.formula_weight 271.377 _chem_comp.id A1AEQ _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1AEQ doub 1 n y C1 C6 A1AEQ sing 2 n y C1 N7 A1AEQ sing 3 n n C2 C3 A1AEQ sing 4 n y C3 C4 A1AEQ doub 5 n y C4 C5 A1AEQ sing 6 n y C4 C10 A1AEQ sing 7 n n C5 C6 A1AEQ doub 8 n y N7 C8 A1AEQ sing 9 n n N7 C9 A1AEQ sing 10 n n C10 C11 A1AEQ doub 11 n y C10 S14 A1AEQ sing 12 n y C11 C12 A1AEQ sing 13 n y C12 C13 A1AEQ doub 14 n y C13 S14 A1AEQ sing 15 n y C13 C15 A1AEQ sing 16 n n C15 C16 A1AEQ doub 17 e n C15 C19 A1AEQ sing 18 n n C16 C17 A1AEQ sing 19 n n C2 H2 A1AEQ sing 20 n n C3 H3 A1AEQ sing 21 n n C5 H5 A1AEQ sing 22 n n C6 H6 A1AEQ sing 23 n n C8 H8 A1AEQ sing 24 n n C8 H82 A1AEQ sing 25 n n C8 H81 A1AEQ sing 26 n n C9 H9 A1AEQ sing 27 n n C9 H91 A1AEQ sing 28 n n C9 H92 A1AEQ sing 29 n n C11 H11 A1AEQ sing 30 n n C12 H12 A1AEQ sing 31 n n C16 H16 A1AEQ sing 32 n n C17 H1 A1AEQ sing 33 n n C19 H192 A1AEQ sing 34 n n C19 H191 A1AEQ sing 35 n n C19 H19 A1AEQ sing 36 n n C17 O1 A1AEQ doub 37 n n # _atom_sites.entry_id 8VZY _atom_sites.fract_transf_matrix[1][1] 0.03097 _atom_sites.fract_transf_matrix[1][2] 0.012337 _atom_sites.fract_transf_matrix[1][3] 0.00089 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030535 _atom_sites.fract_transf_matrix[2][3] 0.001545 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AEQ A 1 201 1 A1AEQ TL1 . D 3 ACT A 1 202 1 ACT ACT . E 4 HOH A 1 301 282 HOH HOH . E 4 HOH A 2 302 196 HOH HOH . E 4 HOH A 3 303 177 HOH HOH . E 4 HOH A 4 304 166 HOH HOH . E 4 HOH A 5 305 190 HOH HOH . E 4 HOH A 6 306 132 HOH HOH . E 4 HOH A 7 307 53 HOH HOH . E 4 HOH A 8 308 154 HOH HOH . E 4 HOH A 9 309 17 HOH HOH . E 4 HOH A 10 310 48 HOH HOH . E 4 HOH A 11 311 125 HOH HOH . E 4 HOH A 12 312 281 HOH HOH . E 4 HOH A 13 313 134 HOH HOH . E 4 HOH A 14 314 115 HOH HOH . E 4 HOH A 15 315 122 HOH HOH . E 4 HOH A 16 316 30 HOH HOH . E 4 HOH A 17 317 18 HOH HOH . E 4 HOH A 18 318 24 HOH HOH . E 4 HOH A 19 319 74 HOH HOH . E 4 HOH A 20 320 101 HOH HOH . E 4 HOH A 21 321 143 HOH HOH . E 4 HOH A 22 322 16 HOH HOH . E 4 HOH A 23 323 155 HOH HOH . E 4 HOH A 24 324 188 HOH HOH . E 4 HOH A 25 325 67 HOH HOH . E 4 HOH A 26 326 39 HOH HOH . E 4 HOH A 27 327 73 HOH HOH . E 4 HOH A 28 328 10 HOH HOH . E 4 HOH A 29 329 127 HOH HOH . E 4 HOH A 30 330 21 HOH HOH . E 4 HOH A 31 331 60 HOH HOH . E 4 HOH A 32 332 197 HOH HOH . E 4 HOH A 33 333 35 HOH HOH . E 4 HOH A 34 334 130 HOH HOH . E 4 HOH A 35 335 47 HOH HOH . E 4 HOH A 36 336 97 HOH HOH . E 4 HOH A 37 337 156 HOH HOH . E 4 HOH A 38 338 158 HOH HOH . E 4 HOH A 39 339 169 HOH HOH . E 4 HOH A 40 340 26 HOH HOH . E 4 HOH A 41 341 172 HOH HOH . E 4 HOH A 42 342 203 HOH HOH . E 4 HOH A 43 343 162 HOH HOH . E 4 HOH A 44 344 83 HOH HOH . E 4 HOH A 45 345 89 HOH HOH . E 4 HOH A 46 346 204 HOH HOH . E 4 HOH A 47 347 185 HOH HOH . E 4 HOH A 48 348 12 HOH HOH . E 4 HOH A 49 349 137 HOH HOH . E 4 HOH A 50 350 19 HOH HOH . E 4 HOH A 51 351 57 HOH HOH . E 4 HOH A 52 352 63 HOH HOH . E 4 HOH A 53 353 138 HOH HOH . E 4 HOH A 54 354 43 HOH HOH . E 4 HOH A 55 355 29 HOH HOH . E 4 HOH A 56 356 62 HOH HOH . E 4 HOH A 57 357 23 HOH HOH . E 4 HOH A 58 358 75 HOH HOH . E 4 HOH A 59 359 102 HOH HOH . E 4 HOH A 60 360 98 HOH HOH . E 4 HOH A 61 361 25 HOH HOH . E 4 HOH A 62 362 1 HOH HOH . E 4 HOH A 63 363 253 HOH HOH . E 4 HOH A 64 364 78 HOH HOH . E 4 HOH A 65 365 187 HOH HOH . E 4 HOH A 66 366 159 HOH HOH . E 4 HOH A 67 367 257 HOH HOH . E 4 HOH A 68 368 111 HOH HOH . E 4 HOH A 69 369 264 HOH HOH . E 4 HOH A 70 370 5 HOH HOH . E 4 HOH A 71 371 171 HOH HOH . E 4 HOH A 72 372 120 HOH HOH . E 4 HOH A 73 373 195 HOH HOH . E 4 HOH A 74 374 113 HOH HOH . E 4 HOH A 75 375 168 HOH HOH . E 4 HOH A 76 376 222 HOH HOH . E 4 HOH A 77 377 80 HOH HOH . E 4 HOH A 78 378 183 HOH HOH . E 4 HOH A 79 379 153 HOH HOH . E 4 HOH A 80 380 72 HOH HOH . E 4 HOH A 81 381 87 HOH HOH . E 4 HOH A 82 382 248 HOH HOH . E 4 HOH A 83 383 250 HOH HOH . E 4 HOH A 84 384 268 HOH HOH . E 4 HOH A 85 385 152 HOH HOH . E 4 HOH A 86 386 212 HOH HOH . E 4 HOH A 87 387 276 HOH HOH . E 4 HOH A 88 388 265 HOH HOH . E 4 HOH A 89 389 164 HOH HOH . E 4 HOH A 90 390 50 HOH HOH . E 4 HOH A 91 391 205 HOH HOH . E 4 HOH A 92 392 239 HOH HOH . E 4 HOH A 93 393 267 HOH HOH . E 4 HOH A 94 394 258 HOH HOH . E 4 HOH A 95 395 184 HOH HOH . E 4 HOH A 96 396 227 HOH HOH . E 4 HOH A 97 397 92 HOH HOH . E 4 HOH A 98 398 174 HOH HOH . E 4 HOH A 99 399 148 HOH HOH . E 4 HOH A 100 400 215 HOH HOH . E 4 HOH A 101 401 68 HOH HOH . E 4 HOH A 102 402 33 HOH HOH . E 4 HOH A 103 403 275 HOH HOH . E 4 HOH A 104 404 260 HOH HOH . E 4 HOH A 105 405 198 HOH HOH . E 4 HOH A 106 406 65 HOH HOH . E 4 HOH A 107 407 256 HOH HOH . E 4 HOH A 108 408 240 HOH HOH . E 4 HOH A 109 409 178 HOH HOH . E 4 HOH A 110 410 145 HOH HOH . F 4 HOH B 1 201 232 HOH HOH . F 4 HOH B 2 202 141 HOH HOH . F 4 HOH B 3 203 201 HOH HOH . F 4 HOH B 4 204 45 HOH HOH . F 4 HOH B 5 205 266 HOH HOH . F 4 HOH B 6 206 194 HOH HOH . F 4 HOH B 7 207 160 HOH HOH . F 4 HOH B 8 208 229 HOH HOH . F 4 HOH B 9 209 61 HOH HOH . F 4 HOH B 10 210 217 HOH HOH . F 4 HOH B 11 211 3 HOH HOH . F 4 HOH B 12 212 180 HOH HOH . F 4 HOH B 13 213 119 HOH HOH . F 4 HOH B 14 214 70 HOH HOH . F 4 HOH B 15 215 247 HOH HOH . F 4 HOH B 16 216 14 HOH HOH . F 4 HOH B 17 217 96 HOH HOH . F 4 HOH B 18 218 221 HOH HOH . F 4 HOH B 19 219 4 HOH HOH . F 4 HOH B 20 220 69 HOH HOH . F 4 HOH B 21 221 181 HOH HOH . F 4 HOH B 22 222 32 HOH HOH . F 4 HOH B 23 223 54 HOH HOH . F 4 HOH B 24 224 76 HOH HOH . F 4 HOH B 25 225 34 HOH HOH . F 4 HOH B 26 226 234 HOH HOH . F 4 HOH B 27 227 31 HOH HOH . F 4 HOH B 28 228 49 HOH HOH . F 4 HOH B 29 229 233 HOH HOH . F 4 HOH B 30 230 64 HOH HOH . F 4 HOH B 31 231 22 HOH HOH . F 4 HOH B 32 232 149 HOH HOH . F 4 HOH B 33 233 136 HOH HOH . F 4 HOH B 34 234 93 HOH HOH . F 4 HOH B 35 235 269 HOH HOH . F 4 HOH B 36 236 82 HOH HOH . F 4 HOH B 37 237 77 HOH HOH . F 4 HOH B 38 238 41 HOH HOH . F 4 HOH B 39 239 86 HOH HOH . F 4 HOH B 40 240 108 HOH HOH . F 4 HOH B 41 241 142 HOH HOH . F 4 HOH B 42 242 13 HOH HOH . F 4 HOH B 43 243 40 HOH HOH . F 4 HOH B 44 244 116 HOH HOH . F 4 HOH B 45 245 170 HOH HOH . F 4 HOH B 46 246 71 HOH HOH . F 4 HOH B 47 247 27 HOH HOH . F 4 HOH B 48 248 123 HOH HOH . F 4 HOH B 49 249 79 HOH HOH . F 4 HOH B 50 250 44 HOH HOH . F 4 HOH B 51 251 42 HOH HOH . F 4 HOH B 52 252 58 HOH HOH . F 4 HOH B 53 253 144 HOH HOH . F 4 HOH B 54 254 36 HOH HOH . F 4 HOH B 55 255 117 HOH HOH . F 4 HOH B 56 256 225 HOH HOH . F 4 HOH B 57 257 107 HOH HOH . F 4 HOH B 58 258 124 HOH HOH . F 4 HOH B 59 259 193 HOH HOH . F 4 HOH B 60 260 20 HOH HOH . F 4 HOH B 61 261 249 HOH HOH . F 4 HOH B 62 262 139 HOH HOH . F 4 HOH B 63 263 95 HOH HOH . F 4 HOH B 64 264 37 HOH HOH . F 4 HOH B 65 265 81 HOH HOH . F 4 HOH B 66 266 55 HOH HOH . F 4 HOH B 67 267 46 HOH HOH . F 4 HOH B 68 268 109 HOH HOH . F 4 HOH B 69 269 284 HOH HOH . F 4 HOH B 70 270 182 HOH HOH . F 4 HOH B 71 271 192 HOH HOH . F 4 HOH B 72 272 110 HOH HOH . F 4 HOH B 73 273 118 HOH HOH . F 4 HOH B 74 274 246 HOH HOH . F 4 HOH B 75 275 165 HOH HOH . F 4 HOH B 76 276 150 HOH HOH . F 4 HOH B 77 277 236 HOH HOH . F 4 HOH B 78 278 91 HOH HOH . F 4 HOH B 79 279 228 HOH HOH . F 4 HOH B 80 280 94 HOH HOH . F 4 HOH B 81 281 140 HOH HOH . F 4 HOH B 82 282 9 HOH HOH . F 4 HOH B 83 283 211 HOH HOH . F 4 HOH B 84 284 121 HOH HOH . F 4 HOH B 85 285 131 HOH HOH . F 4 HOH B 86 286 15 HOH HOH . F 4 HOH B 87 287 251 HOH HOH . F 4 HOH B 88 288 208 HOH HOH . F 4 HOH B 89 289 252 HOH HOH . F 4 HOH B 90 290 157 HOH HOH . F 4 HOH B 91 291 7 HOH HOH . F 4 HOH B 92 292 244 HOH HOH . F 4 HOH B 93 293 280 HOH HOH . F 4 HOH B 94 294 263 HOH HOH . F 4 HOH B 95 295 242 HOH HOH . F 4 HOH B 96 296 272 HOH HOH . F 4 HOH B 97 297 56 HOH HOH . F 4 HOH B 98 298 128 HOH HOH . F 4 HOH B 99 299 85 HOH HOH . F 4 HOH B 100 300 243 HOH HOH . F 4 HOH B 101 301 59 HOH HOH . F 4 HOH B 102 302 199 HOH HOH . F 4 HOH B 103 303 38 HOH HOH . F 4 HOH B 104 304 112 HOH HOH . F 4 HOH B 105 305 271 HOH HOH . F 4 HOH B 106 306 277 HOH HOH . F 4 HOH B 107 307 261 HOH HOH . F 4 HOH B 108 308 283 HOH HOH . F 4 HOH B 109 309 163 HOH HOH . F 4 HOH B 110 310 238 HOH HOH . F 4 HOH B 111 311 133 HOH HOH . F 4 HOH B 112 312 213 HOH HOH . F 4 HOH B 113 313 273 HOH HOH . F 4 HOH B 114 314 223 HOH HOH . F 4 HOH B 115 315 245 HOH HOH . F 4 HOH B 116 316 200 HOH HOH . F 4 HOH B 117 317 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AEQ . . . C 2 -4.583 18.938 13.418 1 40.27 ? C1 A1AEQ 201 A 1 HETATM 2 C C2 A1AEQ . . . C 2 -4.198 19.428 12.173 1 40.13 ? C2 A1AEQ 201 A 1 HETATM 3 C C3 A1AEQ . . . C 2 -3.294 18.717 11.384 1 39.63 ? C3 A1AEQ 201 A 1 HETATM 4 C C4 A1AEQ . . . C 2 -2.778 17.512 11.85 1 39.13 ? C4 A1AEQ 201 A 1 HETATM 5 C C5 A1AEQ . . . C 2 -3.163 17.025 13.096 1 39.48 ? C5 A1AEQ 201 A 1 HETATM 6 C C6 A1AEQ . . . C 2 -4.064 17.735 13.881 1 39.9 ? C6 A1AEQ 201 A 1 HETATM 7 C C8 A1AEQ . . . C 2 -6.04 20.914 13.77 1 41.33 ? C8 A1AEQ 201 A 1 HETATM 8 C C9 A1AEQ . . . C 2 -5.902 19.077 15.5 1 40.8 ? C9 A1AEQ 201 A 1 HETATM 9 C C10 A1AEQ . . . C 2 -1.809 16.711 11.051 1 38.26 ? C10 A1AEQ 201 A 1 HETATM 10 C C11 A1AEQ . . . C 2 -1.095 15.558 11.368 1 37.45 ? C11 A1AEQ 201 A 1 HETATM 11 C C12 A1AEQ . . . C 2 -0.282 15.099 10.329 1 36.47 ? C12 A1AEQ 201 A 1 HETATM 12 C C13 A1AEQ . . . C 2 -0.353 15.898 9.188 1 35.68 ? C13 A1AEQ 201 A 1 HETATM 13 C C15 A1AEQ . . . C 2 0.33 15.786 7.872 1 35.03 ? C15 A1AEQ 201 A 1 HETATM 14 C C16 A1AEQ . . . C 2 1.157 14.76 7.612 1 34.68 ? C16 A1AEQ 201 A 1 HETATM 15 C C17 A1AEQ . . . C 2 1.81 14.675 6.305 1 34.61 ? C17 A1AEQ 201 A 1 HETATM 16 C C19 A1AEQ . . . C 2 0.067 16.863 6.865 1 34.87 ? C19 A1AEQ 201 A 1 HETATM 17 N N7 A1AEQ . . . C 2 -5.494 19.641 14.22 1 40.81 ? N7 A1AEQ 201 A 1 HETATM 18 S S14 A1AEQ . . . C 2 -1.451 17.22 9.43 1 46.05 ? S14 A1AEQ 201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #