data_8W0I
#
_model_server_result.job_id            V8IKRdZnAk9j654alpR_Yg 
_model_server_result.datetime_utc      '2025-04-02 19:04:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w0i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":1002}' 
#
_entry.id    8W0I 
#
_exptl.entry_id    8W0I 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W0I 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W0I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 I N N 
? 9 N N N 
? 9 R N N 
? 9 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 329 2 CYS 329 1_555 G ZN ZN . 2 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc2 A SG CYS 332 2 CYS 332 1_555 G ZN ZN . 2 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc3 A SG CYS 352 2 CYS 352 1_555 G ZN ZN . 2 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc4 A SG CYS 355 2 CYS 355 1_555 G ZN ZN . 2 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc5 A OG SER 530 2 SER 530 1_555 H MG MG . 2 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc6 H MG MG . 2 MG 1001 1_555 I O2G ATP . 2 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc7 H MG MG . 2 MG 1001 1_555 I O1B ATP . 2 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? 
metalc ? metalc8 B OG SER 354 3 SER 352 1_555 J MG MG . 3 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc9 J MG MG . 3 MG 1001 1_555 K O2B ADP . 3 ADP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc10 J MG MG . 3 MG 1001 1_555 K O3B ADP . 3 ADP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc11 C SG CYS 309 4 CYS 306 1_555 L ZN ZN . 4 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc12 C SG CYS 312 4 CYS 309 1_555 L ZN ZN . 4 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc13 C SG CYS 331 4 CYS 328 1_555 L ZN ZN . 4 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc14 C SG CYS 334 4 CYS 331 1_555 L ZN ZN . 4 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc15 C OG SER 520 4 SER 517 1_555 M MG MG . 4 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? 
metalc ? metalc16 M MG MG . 4 MG 1001 1_555 N O3G ATP . 4 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc17 M MG MG . 4 MG 1001 1_555 N O1B ATP . 4 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc18 M MG MG . 4 MG 1001 1_555 N O3B ATP . 4 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc19 D SG CYS 172 5 CYS 172 1_555 O ZN ZN . 5 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc20 D SG CYS 175 5 CYS 175 1_555 O ZN ZN . 5 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc21 D SG CYS 197 5 CYS 197 1_555 O ZN ZN . 5 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc22 E SG CYS 158 6 CYS 158 1_555 P ZN ZN . 6 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc23 E SG CYS 161 6 CYS 161 1_555 P ZN ZN . 6 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc24 E SG CYS 180 6 CYS 180 1_555 P ZN ZN . 6 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc25 E SG CYS 185 6 CYS 185 1_555 P ZN ZN . 6 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc26 E OG SER 403 6 SER 403 1_555 Q MG MG . 6 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? 
metalc ? metalc27 Q MG MG . 6 MG 1001 1_555 R O2G ATP . 6 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc28 Q MG MG . 6 MG 1001 1_555 R O1B ATP . 6 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc29 F SG CYS 184 7 CYS 184 1_555 S ZN ZN . 7 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc30 F SG CYS 187 7 CYS 187 1_555 S ZN ZN . 7 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc31 F SG CYS 206 7 CYS 206 1_555 S ZN ZN . 7 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc32 F SG CYS 211 7 CYS 211 1_555 S ZN ZN . 7 ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc33 F OG SER 388 7 SER 388 1_555 T MG MG . 7 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc34 T MG MG . 7 MG 1001 1_555 U O1G ATP . 7 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc35 T MG MG . 7 MG 1001 1_555 U O2G ATP . 7 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc36 T MG MG . 7 MG 1001 1_555 U O3B ATP . 7 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
metalc ? metalc37 T MG MG . 7 MG 1001 1_555 U O1B ATP . 7 ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8W0I 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 ZN 2 1 1000 1000 ZN ZN . 
H 8 MG 2 1 1001 1001 MG MG . 
I 9 ATP 2 1 1002 1002 ATP ATP . 
J 8 MG 3 1 1001 1001 MG MG . 
K 10 ADP 3 1 1002 1002 ADP ADP . 
L 7 ZN 4 1 1000 1000 ZN ZN . 
M 8 MG 4 1 1001 1001 MG MG . 
N 9 ATP 4 1 1002 1002 ATP ATP . 
O 7 ZN 5 1 1000 1000 ZN ZN . 
P 7 ZN 6 1 1000 1000 ZN ZN . 
Q 8 MG 6 1 1001 1001 MG MG . 
R 9 ATP 6 1 1002 1002 ATP ATP . 
S 7 ZN 7 1 1000 1000 ZN ZN . 
T 8 MG 7 1 1001 1001 MG MG . 
U 9 ATP 7 1 1002 1002 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . U 9 196.199 205.347 275.495 1 178.01 ? PG ATP 1002 7 1 
HETATM 2 O O1G ATP . . . U 9 197.154 204.258 275.856 1 154.8 ? O1G ATP 1002 7 1 
HETATM 3 O O2G ATP . . . U 9 196.856 206.562 274.807 1 172.12 ? O2G ATP 1002 7 1 
HETATM 4 O O3G ATP . . . U 9 195.008 204.882 274.651 1 169.93 ? O3G ATP 1002 7 1 
HETATM 5 P PB ATP . . . U 9 195.929 206.263 278.277 1 167.84 ? PB ATP 1002 7 1 
HETATM 6 O O1B ATP . . . U 9 197.371 206.551 278.382 1 150.91 ? O1B ATP 1002 7 1 
HETATM 7 O O2B ATP . . . U 9 195.294 205.173 279.138 1 135.68 ? O2B ATP 1002 7 1 
HETATM 8 O O3B ATP . . . U 9 195.55 205.935 276.797 1 178.71 ? O3B ATP 1002 7 1 
HETATM 9 P PA ATP . . . U 9 195.026 208.709 279.634 1 199.6 ? PA ATP 1002 7 1 
HETATM 10 O O1A ATP . . . U 9 196.099 209.691 279.385 1 182.18 ? O1A ATP 1002 7 1 
HETATM 11 O O2A ATP . . . U 9 195.081 208.028 280.996 1 194.84 ? O2A ATP 1002 7 1 
HETATM 12 O O3A ATP . . . U 9 195.076 207.576 278.535 1 186.99 ? O3A ATP 1002 7 1 
HETATM 13 O O5' ATP . . . U 9 193.593 209.352 279.478 1 190.85 ? O5' ATP 1002 7 1 
HETATM 14 C C5' ATP . . . U 9 193.371 210.755 279.734 1 180.25 ? C5' ATP 1002 7 1 
HETATM 15 C C4' ATP . . . U 9 193.184 211.002 281.213 1 179.35 ? C4' ATP 1002 7 1 
HETATM 16 O O4' ATP . . . U 9 192.626 209.815 281.796 1 181.51 ? O4' ATP 1002 7 1 
HETATM 17 C C3' ATP . . . U 9 194.54 211.129 281.907 1 182.82 ? C3' ATP 1002 7 1 
HETATM 18 O O3' ATP . . . U 9 194.692 212.508 282.213 1 183.83 ? O3' ATP 1002 7 1 
HETATM 19 C C2' ATP . . . U 9 194.347 210.369 283.232 1 185.14 ? C2' ATP 1002 7 1 
HETATM 20 O O2' ATP . . . U 9 194.457 211.322 284.281 1 187.36 ? O2' ATP 1002 7 1 
HETATM 21 C C1' ATP . . . U 9 192.876 209.963 283.167 1 180.51 ? C1' ATP 1002 7 1 
HETATM 22 N N9 ATP . . . U 9 192.637 208.665 283.791 1 177.3 ? N9 ATP 1002 7 1 
HETATM 23 C C8 ATP . . . U 9 192.368 207.482 283.152 1 176.68 ? C8 ATP 1002 7 1 
HETATM 24 N N7 ATP . . . U 9 192.183 206.464 283.957 1 167.75 ? N7 ATP 1002 7 1 
HETATM 25 C C5 ATP . . . U 9 192.335 207.017 285.219 1 170.82 ? C5 ATP 1002 7 1 
HETATM 26 C C6 ATP . . . U 9 192.263 206.46 286.509 1 165.43 ? C6 ATP 1002 7 1 
HETATM 27 N N6 ATP . . . U 9 192.003 205.17 286.739 1 155.36 ? N6 ATP 1002 7 1 
HETATM 28 N N1 ATP . . . U 9 192.469 207.283 287.562 1 152.83 ? N1 ATP 1002 7 1 
HETATM 29 C C2 ATP . . . U 9 192.73 208.571 287.326 1 152.42 ? C2 ATP 1002 7 1 
HETATM 30 N N3 ATP . . . U 9 192.825 209.207 286.155 1 161.71 ? N3 ATP 1002 7 1 
HETATM 31 C C4 ATP . . . U 9 192.615 208.371 285.133 1 170.24 ? C4 ATP 1002 7 1 
HETATM 32 H "H5'1" ATP . . . U 9 192.576 211.045 279.261 1 175.45 ? "H5'1" ATP 1002 7 1 
HETATM 33 H "H5'2" ATP . . . U 9 194.134 211.264 279.418 1 181.58 ? "H5'2" ATP 1002 7 1 
HETATM 34 H H4' ATP . . . U 9 192.628 211.782 281.366 1 177.35 ? H4' ATP 1002 7 1 
HETATM 35 H H3' ATP . . . U 9 195.279 210.786 281.381 1 184.32 ? H3' ATP 1002 7 1 
HETATM 36 H HO3' ATP . . . U 9 194.665 212.928 281.475 1 182.61 ? HO3' ATP 1002 7 1 
HETATM 37 H H2' ATP . . . U 9 194.952 209.618 283.338 1 183.19 ? H2' ATP 1002 7 1 
HETATM 38 H HO2' ATP . . . U 9 193.896 211.938 284.115 1 183.19 ? HO2' ATP 1002 7 1 
HETATM 39 H H1' ATP . . . U 9 192.308 210.641 283.564 1 178.2 ? H1' ATP 1002 7 1 
HETATM 40 H H8 ATP . . . U 9 192.321 207.408 282.226 1 176.87 ? H8 ATP 1002 7 1 
HETATM 41 H HN61 ATP . . . U 9 191.869 204.633 286.08 1 157.81 ? HN61 ATP 1002 7 1 
HETATM 42 H HN62 ATP . . . U 9 191.969 204.875 287.546 1 155.24 ? HN62 ATP 1002 7 1 
HETATM 43 H H2 ATP . . . U 9 192.863 209.098 288.081 1 154.04 ? H2 ATP 1002 7 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    92 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#