data_8W0J
#
_model_server_result.job_id            Yu6T23cMOqBJgIURSaPG1w 
_model_server_result.datetime_utc      '2024-10-25 20:28:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":705}' 
#
_entry.id    8W0J 
#
_exptl.entry_id    8W0J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8W0J 
_cell.length_a            139.073 
_cell.length_b            139.073 
_cell.length_c            544.504 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 R N N 
? 3 S N N 
? 3 BA N N 
? 3 CA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8W0J 
_atom_sites.fract_transf_matrix[1][1]    0.00719 
_atom_sites.fract_transf_matrix[1][2]    0.004151 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008303 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 YHT A 1 701 1 YHT 196 . 
E 3 GOL A 1 702 1 GOL GOL . 
F 3 GOL A 1 703 4 GOL GOL . 
G 3 GOL A 1 704 6 GOL GOL . 
H 3 GOL A 1 705 8 GOL GOL . 
I 4 PGE A 1 706 9 PGE PGE . 
J 4 PGE A 1 707 11 PGE PGE . 
K 5 SO4 A 1 708 1 SO4 SO4 . 
L 5 SO4 A 1 709 2 SO4 SO4 . 
M 5 SO4 A 1 710 3 SO4 SO4 . 
N 5 SO4 A 1 711 5 SO4 SO4 . 
O 5 SO4 A 1 712 9 SO4 SO4 . 
P 5 SO4 A 1 713 12 SO4 SO4 . 
Q 2 YHT B 1 701 2 YHT 196 . 
R 3 GOL B 1 702 2 GOL GOL . 
S 3 GOL B 1 703 5 GOL GOL . 
T 4 PGE B 1 704 10 PGE PGE . 
U 6 CL B 1 705 1 CL CL . 
V 6 CL B 1 706 2 CL CL . 
W 5 SO4 B 1 707 6 SO4 SO4 . 
X 5 SO4 B 1 708 10 SO4 SO4 . 
Y 5 SO4 B 1 709 11 SO4 SO4 . 
Z 5 SO4 B 1 710 13 SO4 SO4 . 
AA 2 YHT C 1 701 3 YHT 196 . 
BA 3 GOL C 1 702 3 GOL GOL . 
CA 3 GOL C 1 703 7 GOL GOL . 
DA 5 SO4 C 1 704 4 SO4 SO4 . 
EA 5 SO4 C 1 705 7 SO4 SO4 . 
FA 5 SO4 C 1 706 8 SO4 SO4 . 
GA 7 HOH A 1 801 139 HOH HOH . 
GA 7 HOH A 2 802 79 HOH HOH . 
GA 7 HOH A 3 803 164 HOH HOH . 
GA 7 HOH A 4 804 157 HOH HOH . 
GA 7 HOH A 5 805 5 HOH HOH . 
GA 7 HOH A 6 806 125 HOH HOH . 
GA 7 HOH A 7 807 165 HOH HOH . 
GA 7 HOH A 8 808 24 HOH HOH . 
GA 7 HOH A 9 809 66 HOH HOH . 
GA 7 HOH A 10 810 9 HOH HOH . 
GA 7 HOH A 11 811 21 HOH HOH . 
GA 7 HOH A 12 812 7 HOH HOH . 
GA 7 HOH A 13 813 46 HOH HOH . 
GA 7 HOH A 14 814 60 HOH HOH . 
GA 7 HOH A 15 815 83 HOH HOH . 
GA 7 HOH A 16 816 90 HOH HOH . 
GA 7 HOH A 17 817 67 HOH HOH . 
GA 7 HOH A 18 818 62 HOH HOH . 
GA 7 HOH A 19 819 110 HOH HOH . 
GA 7 HOH A 20 820 35 HOH HOH . 
GA 7 HOH A 21 821 173 HOH HOH . 
GA 7 HOH A 22 822 86 HOH HOH . 
GA 7 HOH A 23 823 12 HOH HOH . 
GA 7 HOH A 24 824 19 HOH HOH . 
GA 7 HOH A 25 825 87 HOH HOH . 
GA 7 HOH A 26 826 101 HOH HOH . 
GA 7 HOH A 27 827 131 HOH HOH . 
GA 7 HOH A 28 828 3 HOH HOH . 
GA 7 HOH A 29 829 112 HOH HOH . 
GA 7 HOH A 30 830 151 HOH HOH . 
GA 7 HOH A 31 831 16 HOH HOH . 
GA 7 HOH A 32 832 31 HOH HOH . 
GA 7 HOH A 33 833 156 HOH HOH . 
GA 7 HOH A 34 834 152 HOH HOH . 
GA 7 HOH A 35 835 27 HOH HOH . 
GA 7 HOH A 36 836 104 HOH HOH . 
GA 7 HOH A 37 837 40 HOH HOH . 
GA 7 HOH A 38 838 75 HOH HOH . 
GA 7 HOH A 39 839 73 HOH HOH . 
GA 7 HOH A 40 840 48 HOH HOH . 
GA 7 HOH A 41 841 100 HOH HOH . 
GA 7 HOH A 42 842 116 HOH HOH . 
GA 7 HOH A 43 843 77 HOH HOH . 
GA 7 HOH A 44 844 114 HOH HOH . 
GA 7 HOH A 45 845 20 HOH HOH . 
GA 7 HOH A 46 846 69 HOH HOH . 
GA 7 HOH A 47 847 99 HOH HOH . 
GA 7 HOH A 48 848 122 HOH HOH . 
GA 7 HOH A 49 849 158 HOH HOH . 
GA 7 HOH A 50 850 34 HOH HOH . 
GA 7 HOH A 51 851 52 HOH HOH . 
GA 7 HOH A 52 852 37 HOH HOH . 
GA 7 HOH A 53 853 172 HOH HOH . 
GA 7 HOH A 54 854 160 HOH HOH . 
GA 7 HOH A 55 855 145 HOH HOH . 
GA 7 HOH A 56 856 118 HOH HOH . 
GA 7 HOH A 57 857 4 HOH HOH . 
GA 7 HOH A 58 858 30 HOH HOH . 
GA 7 HOH A 59 859 149 HOH HOH . 
GA 7 HOH A 60 860 153 HOH HOH . 
GA 7 HOH A 61 861 6 HOH HOH . 
GA 7 HOH A 62 862 8 HOH HOH . 
GA 7 HOH A 63 863 78 HOH HOH . 
GA 7 HOH A 64 864 136 HOH HOH . 
GA 7 HOH A 65 865 147 HOH HOH . 
GA 7 HOH A 66 866 64 HOH HOH . 
GA 7 HOH A 67 867 163 HOH HOH . 
GA 7 HOH A 68 868 127 HOH HOH . 
GA 7 HOH A 69 869 25 HOH HOH . 
GA 7 HOH A 70 870 105 HOH HOH . 
GA 7 HOH A 71 871 13 HOH HOH . 
GA 7 HOH A 72 872 56 HOH HOH . 
GA 7 HOH A 73 873 1 HOH HOH . 
GA 7 HOH A 74 874 162 HOH HOH . 
GA 7 HOH A 75 875 148 HOH HOH . 
GA 7 HOH A 76 876 175 HOH HOH . 
GA 7 HOH A 77 877 161 HOH HOH . 
GA 7 HOH A 78 878 17 HOH HOH . 
GA 7 HOH A 79 879 130 HOH HOH . 
GA 7 HOH A 80 880 58 HOH HOH . 
GA 7 HOH A 81 881 141 HOH HOH . 
GA 7 HOH A 82 882 135 HOH HOH . 
GA 7 HOH A 83 883 109 HOH HOH . 
GA 7 HOH A 84 884 2 HOH HOH . 
GA 7 HOH A 85 885 115 HOH HOH . 
GA 7 HOH A 86 886 126 HOH HOH . 
GA 7 HOH A 87 887 111 HOH HOH . 
GA 7 HOH A 88 888 74 HOH HOH . 
GA 7 HOH A 89 889 26 HOH HOH . 
GA 7 HOH A 90 890 123 HOH HOH . 
GA 7 HOH A 91 891 169 HOH HOH . 
GA 7 HOH A 92 892 50 HOH HOH . 
GA 7 HOH A 93 893 168 HOH HOH . 
GA 7 HOH A 94 894 171 HOH HOH . 
HA 7 HOH B 1 801 137 HOH HOH . 
HA 7 HOH B 2 802 23 HOH HOH . 
HA 7 HOH B 3 803 22 HOH HOH . 
HA 7 HOH B 4 804 55 HOH HOH . 
HA 7 HOH B 5 805 59 HOH HOH . 
HA 7 HOH B 6 806 14 HOH HOH . 
HA 7 HOH B 7 807 97 HOH HOH . 
HA 7 HOH B 8 808 103 HOH HOH . 
HA 7 HOH B 9 809 18 HOH HOH . 
HA 7 HOH B 10 810 36 HOH HOH . 
HA 7 HOH B 11 811 166 HOH HOH . 
HA 7 HOH B 12 812 94 HOH HOH . 
HA 7 HOH B 13 813 174 HOH HOH . 
HA 7 HOH B 14 814 85 HOH HOH . 
HA 7 HOH B 15 815 63 HOH HOH . 
HA 7 HOH B 16 816 167 HOH HOH . 
HA 7 HOH B 17 817 10 HOH HOH . 
HA 7 HOH B 18 818 39 HOH HOH . 
HA 7 HOH B 19 819 129 HOH HOH . 
HA 7 HOH B 20 820 120 HOH HOH . 
HA 7 HOH B 21 821 11 HOH HOH . 
HA 7 HOH B 22 822 150 HOH HOH . 
HA 7 HOH B 23 823 92 HOH HOH . 
HA 7 HOH B 24 824 93 HOH HOH . 
HA 7 HOH B 25 825 29 HOH HOH . 
HA 7 HOH B 26 826 33 HOH HOH . 
HA 7 HOH B 27 827 91 HOH HOH . 
HA 7 HOH B 28 828 41 HOH HOH . 
HA 7 HOH B 29 829 82 HOH HOH . 
HA 7 HOH B 30 830 70 HOH HOH . 
HA 7 HOH B 31 831 42 HOH HOH . 
HA 7 HOH B 32 832 49 HOH HOH . 
HA 7 HOH B 33 833 38 HOH HOH . 
HA 7 HOH B 34 834 72 HOH HOH . 
HA 7 HOH B 35 835 108 HOH HOH . 
HA 7 HOH B 36 836 140 HOH HOH . 
HA 7 HOH B 37 837 170 HOH HOH . 
HA 7 HOH B 38 838 28 HOH HOH . 
HA 7 HOH B 39 839 121 HOH HOH . 
HA 7 HOH B 40 840 65 HOH HOH . 
HA 7 HOH B 41 841 98 HOH HOH . 
HA 7 HOH B 42 842 128 HOH HOH . 
HA 7 HOH B 43 843 134 HOH HOH . 
HA 7 HOH B 44 844 54 HOH HOH . 
HA 7 HOH B 45 845 159 HOH HOH . 
HA 7 HOH B 46 846 80 HOH HOH . 
HA 7 HOH B 47 847 45 HOH HOH . 
HA 7 HOH B 48 848 138 HOH HOH . 
HA 7 HOH B 49 849 32 HOH HOH . 
HA 7 HOH B 50 850 95 HOH HOH . 
HA 7 HOH B 51 851 57 HOH HOH . 
HA 7 HOH B 52 852 51 HOH HOH . 
HA 7 HOH B 53 853 113 HOH HOH . 
HA 7 HOH B 54 854 47 HOH HOH . 
HA 7 HOH B 55 855 133 HOH HOH . 
HA 7 HOH B 56 856 71 HOH HOH . 
HA 7 HOH B 57 857 119 HOH HOH . 
HA 7 HOH B 58 858 76 HOH HOH . 
HA 7 HOH B 59 859 15 HOH HOH . 
HA 7 HOH B 60 860 117 HOH HOH . 
HA 7 HOH B 61 861 124 HOH HOH . 
HA 7 HOH B 62 862 154 HOH HOH . 
HA 7 HOH B 63 863 96 HOH HOH . 
HA 7 HOH B 64 864 61 HOH HOH . 
HA 7 HOH B 65 865 177 HOH HOH . 
HA 7 HOH B 66 866 102 HOH HOH . 
HA 7 HOH B 67 867 84 HOH HOH . 
HA 7 HOH B 68 868 81 HOH HOH . 
HA 7 HOH B 69 869 144 HOH HOH . 
HA 7 HOH B 70 870 132 HOH HOH . 
HA 7 HOH B 71 871 142 HOH HOH . 
HA 7 HOH B 72 872 176 HOH HOH . 
HA 7 HOH B 73 873 143 HOH HOH . 
IA 7 HOH C 1 801 107 HOH HOH . 
IA 7 HOH C 2 802 53 HOH HOH . 
IA 7 HOH C 3 803 89 HOH HOH . 
IA 7 HOH C 4 804 68 HOH HOH . 
IA 7 HOH C 5 805 146 HOH HOH . 
IA 7 HOH C 6 806 88 HOH HOH . 
IA 7 HOH C 7 807 44 HOH HOH . 
IA 7 HOH C 8 808 155 HOH HOH . 
IA 7 HOH C 9 809 43 HOH HOH . 
IA 7 HOH C 10 810 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 -2.592 30.49 -41.434 1 76.31 ? C1 GOL 705 A 1 
HETATM 2 O O1 GOL . . . H 3 -3.44 29.361 -41.408 1 62.79 ? O1 GOL 705 A 1 
HETATM 3 C C2 GOL . . . H 3 -1.533 30.333 -40.36 1 83.4 ? C2 GOL 705 A 1 
HETATM 4 O O2 GOL . . . H 3 -0.25 30.516 -40.921 1 75.49 ? O2 GOL 705 A 1 
HETATM 5 C C3 GOL . . . H 3 -1.783 31.285 -39.196 1 73.08 ? C3 GOL 705 A 1 
HETATM 6 O O3 GOL . . . H 3 -2.798 30.719 -38.391 1 65.6 ? O3 GOL 705 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#