data_8W0L # _model_server_result.job_id 27_ZFi7czyO6NKXAR8yBTg _model_server_result.datetime_utc '2025-07-03 02:11:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":702}' # _entry.id 8W0L # _exptl.entry_id 8W0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W0L _cell.length_a 139.179 _cell.length_b 139.179 _cell.length_c 543.69 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 CA N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8W0L _atom_sites.fract_transf_matrix[1][1] 0.007185 _atom_sites.fract_transf_matrix[1][2] 0.004148 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 YHT A 1 701 1 YHT 196 . E 3 COA A 1 702 1 COA COA . F 4 GOL A 1 703 1 GOL GOL . G 4 GOL A 1 704 3 GOL GOL . H 4 GOL A 1 705 4 GOL GOL . I 5 PGE A 1 706 5 PGE PGE . J 6 SO4 A 1 707 1 SO4 SO4 . K 6 SO4 A 1 708 2 SO4 SO4 . L 6 SO4 A 1 709 3 SO4 SO4 . M 6 SO4 A 1 710 4 SO4 SO4 . N 6 SO4 A 1 711 9 SO4 SO4 . O 6 SO4 A 1 712 12 SO4 SO4 . P 6 SO4 A 1 713 14 SO4 SO4 . Q 6 SO4 A 1 714 16 SO4 SO4 . R 2 YHT B 1 701 2 YHT 196 . S 4 GOL B 1 702 2 GOL GOL . T 5 PGE B 1 703 6 PGE PGE . U 7 CL B 1 704 1 CL CL . V 7 CL B 1 705 2 CL CL . W 6 SO4 B 1 706 5 SO4 SO4 . X 6 SO4 B 1 707 8 SO4 SO4 . Y 6 SO4 B 1 708 10 SO4 SO4 . Z 6 SO4 B 1 709 11 SO4 SO4 . AA 6 SO4 B 1 710 13 SO4 SO4 . BA 2 YHT C 1 701 3 YHT 196 . CA 3 COA C 1 702 3 COA COA . DA 6 SO4 C 1 703 6 SO4 SO4 . EA 6 SO4 C 1 704 7 SO4 SO4 . FA 6 SO4 C 1 705 15 SO4 SO4 . GA 8 HOH A 1 801 14 HOH HOH . GA 8 HOH A 2 802 19 HOH HOH . GA 8 HOH A 3 803 58 HOH HOH . GA 8 HOH A 4 804 16 HOH HOH . GA 8 HOH A 5 805 1 HOH HOH . GA 8 HOH A 6 806 40 HOH HOH . GA 8 HOH A 7 807 15 HOH HOH . GA 8 HOH A 8 808 24 HOH HOH . GA 8 HOH A 9 809 39 HOH HOH . GA 8 HOH A 10 810 59 HOH HOH . GA 8 HOH A 11 811 12 HOH HOH . GA 8 HOH A 12 812 41 HOH HOH . GA 8 HOH A 13 813 51 HOH HOH . GA 8 HOH A 14 814 38 HOH HOH . GA 8 HOH A 15 815 4 HOH HOH . GA 8 HOH A 16 816 27 HOH HOH . GA 8 HOH A 17 817 42 HOH HOH . GA 8 HOH A 18 818 3 HOH HOH . GA 8 HOH A 19 819 44 HOH HOH . GA 8 HOH A 20 820 47 HOH HOH . GA 8 HOH A 21 821 62 HOH HOH . GA 8 HOH A 22 822 37 HOH HOH . GA 8 HOH A 23 823 7 HOH HOH . GA 8 HOH A 24 824 35 HOH HOH . GA 8 HOH A 25 825 49 HOH HOH . GA 8 HOH A 26 826 48 HOH HOH . GA 8 HOH A 27 827 18 HOH HOH . GA 8 HOH A 28 828 13 HOH HOH . GA 8 HOH A 29 829 31 HOH HOH . GA 8 HOH A 30 830 8 HOH HOH . GA 8 HOH A 31 831 11 HOH HOH . GA 8 HOH A 32 832 36 HOH HOH . GA 8 HOH A 33 833 64 HOH HOH . GA 8 HOH A 34 834 2 HOH HOH . GA 8 HOH A 35 835 32 HOH HOH . GA 8 HOH A 36 836 65 HOH HOH . GA 8 HOH A 37 837 52 HOH HOH . GA 8 HOH A 38 838 54 HOH HOH . GA 8 HOH A 39 839 29 HOH HOH . HA 8 HOH B 1 801 9 HOH HOH . HA 8 HOH B 2 802 22 HOH HOH . HA 8 HOH B 3 803 46 HOH HOH . HA 8 HOH B 4 804 20 HOH HOH . HA 8 HOH B 5 805 61 HOH HOH . HA 8 HOH B 6 806 63 HOH HOH . HA 8 HOH B 7 807 5 HOH HOH . HA 8 HOH B 8 808 26 HOH HOH . HA 8 HOH B 9 809 45 HOH HOH . HA 8 HOH B 10 810 34 HOH HOH . HA 8 HOH B 11 811 10 HOH HOH . HA 8 HOH B 12 812 17 HOH HOH . HA 8 HOH B 13 813 50 HOH HOH . HA 8 HOH B 14 814 43 HOH HOH . HA 8 HOH B 15 815 25 HOH HOH . HA 8 HOH B 16 816 6 HOH HOH . HA 8 HOH B 17 817 60 HOH HOH . HA 8 HOH B 18 818 28 HOH HOH . HA 8 HOH B 19 819 21 HOH HOH . HA 8 HOH B 20 820 23 HOH HOH . HA 8 HOH B 21 821 33 HOH HOH . HA 8 HOH B 22 822 53 HOH HOH . HA 8 HOH B 23 823 55 HOH HOH . HA 8 HOH B 24 824 30 HOH HOH . HA 8 HOH B 25 825 66 HOH HOH . HA 8 HOH B 26 826 56 HOH HOH . HA 8 HOH B 27 827 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . CA 3 -39.402 57.276 -28.415 1 136.08 ? N1A COA 702 C 1 HETATM 2 C C2A COA . . . CA 3 -40.443 56.576 -28.884 1 138.05 ? C2A COA 702 C 1 HETATM 3 N N3A COA . . . CA 3 -40.993 56.594 -30.094 1 142.36 ? N3A COA 702 C 1 HETATM 4 C C4A COA . . . CA 3 -40.352 57.463 -30.889 1 143.86 ? C4A COA 702 C 1 HETATM 5 C C5A COA . . . CA 3 -39.275 58.253 -30.558 1 141.54 ? C5A COA 702 C 1 HETATM 6 C C6A COA . . . CA 3 -38.779 58.144 -29.246 1 137.27 ? C6A COA 702 C 1 HETATM 7 N N6A COA . . . CA 3 -37.747 58.843 -28.784 1 134.74 ? N6A COA 702 C 1 HETATM 8 N N7A COA . . . CA 3 -38.892 59.021 -31.65 1 141.28 ? N7A COA 702 C 1 HETATM 9 C C8A COA . . . CA 3 -39.731 58.687 -32.603 1 145.82 ? C8A COA 702 C 1 HETATM 10 N N9A COA . . . CA 3 -40.637 57.743 -32.197 1 147.51 ? N9A COA 702 C 1 HETATM 11 C C1B COA . . . CA 3 -41.708 57.147 -32.967 1 156.14 ? C1B COA 702 C 1 HETATM 12 C C2B COA . . . CA 3 -42.974 57.992 -32.982 1 159.21 ? C2B COA 702 C 1 HETATM 13 O O2B COA . . . CA 3 -43.75 57.78 -31.824 1 162.14 ? O2B COA 702 C 1 HETATM 14 C C3B COA . . . CA 3 -43.656 57.492 -34.257 1 164.07 ? C3B COA 702 C 1 HETATM 15 O O3B COA . . . CA 3 -44.498 56.381 -33.97 1 167.64 ? O3B COA 702 C 1 HETATM 16 P P3B COA . . . CA 3 -45.894 56.572 -34.752 1 170.07 ? P3B COA 702 C 1 HETATM 17 O O7A COA . . . CA 3 -46.927 55.78 -33.976 1 166.85 ? O7A COA 702 C 1 HETATM 18 O O8A COA . . . CA 3 -45.687 56.028 -36.151 1 166.31 ? O8A COA 702 C 1 HETATM 19 O O9A COA . . . CA 3 -46.192 58.058 -34.752 1 164.05 ? O9A COA 702 C 1 HETATM 20 C C4B COA . . . CA 3 -42.493 57.057 -35.149 1 163.26 ? C4B COA 702 C 1 HETATM 21 O O4B COA . . . CA 3 -41.309 57.077 -34.312 1 159.33 ? O4B COA 702 C 1 HETATM 22 C C5B COA . . . CA 3 -42.265 57.93 -36.358 1 161.99 ? C5B COA 702 C 1 HETATM 23 O O5B COA . . . CA 3 -42.53 59.31 -36.01 1 163.47 ? O5B COA 702 C 1 HETATM 24 P P1A COA . . . CA 3 -41.404 60.391 -36.368 1 166.17 ? P1A COA 702 C 1 HETATM 25 O O1A COA . . . CA 3 -41.237 60.459 -37.849 1 164.91 ? O1A COA 702 C 1 HETATM 26 O O2A COA . . . CA 3 -40.192 60.133 -35.536 1 160.46 ? O2A COA 702 C 1 HETATM 27 O O3A COA . . . CA 3 -42.106 61.742 -35.867 1 166.8 ? O3A COA 702 C 1 HETATM 28 P P2A COA . . . CA 3 -42.23 62.408 -34.415 1 166.32 ? P2A COA 702 C 1 HETATM 29 O O4A COA . . . CA 3 -43.339 63.406 -34.422 1 162.42 ? O4A COA 702 C 1 HETATM 30 O O5A COA . . . CA 3 -42.243 61.323 -33.392 1 159.63 ? O5A COA 702 C 1 HETATM 31 O O6A COA . . . CA 3 -40.84 63.201 -34.315 1 152.13 ? O6A COA 702 C 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #