data_8W0L # _model_server_result.job_id 6NDDlOBmN7yw1CIyFFWK8g _model_server_result.datetime_utc '2024-10-19 17:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":706}' # _entry.id 8W0L # _exptl.entry_id 8W0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W0L _cell.length_a 139.179 _cell.length_b 139.179 _cell.length_c 543.69 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 T N N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 336 n n C1 C2 PGE sing 337 n n C1 H1 PGE sing 338 n n C1 H12 PGE sing 339 n n O1 HO1 PGE sing 340 n n C2 O2 PGE sing 341 n n C2 H2 PGE sing 342 n n C2 H22 PGE sing 343 n n O2 C3 PGE sing 344 n n C3 C4 PGE sing 345 n n C3 H3 PGE sing 346 n n C3 H32 PGE sing 347 n n C4 O3 PGE sing 348 n n C4 H4 PGE sing 349 n n C4 H42 PGE sing 350 n n O4 C6 PGE sing 351 n n O4 HO4 PGE sing 352 n n C6 C5 PGE sing 353 n n C6 H6 PGE sing 354 n n C6 H62 PGE sing 355 n n C5 O3 PGE sing 356 n n C5 H5 PGE sing 357 n n C5 H52 PGE sing 358 n n # _atom_sites.entry_id 8W0L _atom_sites.fract_transf_matrix[1][1] 0.007185 _atom_sites.fract_transf_matrix[1][2] 0.004148 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 YHT A 1 701 1 YHT 196 . E 3 COA A 1 702 1 COA COA . F 4 GOL A 1 703 1 GOL GOL . G 4 GOL A 1 704 3 GOL GOL . H 4 GOL A 1 705 4 GOL GOL . I 5 PGE A 1 706 5 PGE PGE . J 6 SO4 A 1 707 1 SO4 SO4 . K 6 SO4 A 1 708 2 SO4 SO4 . L 6 SO4 A 1 709 3 SO4 SO4 . M 6 SO4 A 1 710 4 SO4 SO4 . N 6 SO4 A 1 711 9 SO4 SO4 . O 6 SO4 A 1 712 12 SO4 SO4 . P 6 SO4 A 1 713 14 SO4 SO4 . Q 6 SO4 A 1 714 16 SO4 SO4 . R 2 YHT B 1 701 2 YHT 196 . S 4 GOL B 1 702 2 GOL GOL . T 5 PGE B 1 703 6 PGE PGE . U 7 CL B 1 704 1 CL CL . V 7 CL B 1 705 2 CL CL . W 6 SO4 B 1 706 5 SO4 SO4 . X 6 SO4 B 1 707 8 SO4 SO4 . Y 6 SO4 B 1 708 10 SO4 SO4 . Z 6 SO4 B 1 709 11 SO4 SO4 . AA 6 SO4 B 1 710 13 SO4 SO4 . BA 2 YHT C 1 701 3 YHT 196 . CA 3 COA C 1 702 3 COA COA . DA 6 SO4 C 1 703 6 SO4 SO4 . EA 6 SO4 C 1 704 7 SO4 SO4 . FA 6 SO4 C 1 705 15 SO4 SO4 . GA 8 HOH A 1 801 14 HOH HOH . GA 8 HOH A 2 802 19 HOH HOH . GA 8 HOH A 3 803 58 HOH HOH . GA 8 HOH A 4 804 16 HOH HOH . GA 8 HOH A 5 805 1 HOH HOH . GA 8 HOH A 6 806 40 HOH HOH . GA 8 HOH A 7 807 15 HOH HOH . GA 8 HOH A 8 808 24 HOH HOH . GA 8 HOH A 9 809 39 HOH HOH . GA 8 HOH A 10 810 59 HOH HOH . GA 8 HOH A 11 811 12 HOH HOH . GA 8 HOH A 12 812 41 HOH HOH . GA 8 HOH A 13 813 51 HOH HOH . GA 8 HOH A 14 814 38 HOH HOH . GA 8 HOH A 15 815 4 HOH HOH . GA 8 HOH A 16 816 27 HOH HOH . GA 8 HOH A 17 817 42 HOH HOH . GA 8 HOH A 18 818 3 HOH HOH . GA 8 HOH A 19 819 44 HOH HOH . GA 8 HOH A 20 820 47 HOH HOH . GA 8 HOH A 21 821 62 HOH HOH . GA 8 HOH A 22 822 37 HOH HOH . GA 8 HOH A 23 823 7 HOH HOH . GA 8 HOH A 24 824 35 HOH HOH . GA 8 HOH A 25 825 49 HOH HOH . GA 8 HOH A 26 826 48 HOH HOH . GA 8 HOH A 27 827 18 HOH HOH . GA 8 HOH A 28 828 13 HOH HOH . GA 8 HOH A 29 829 31 HOH HOH . GA 8 HOH A 30 830 8 HOH HOH . GA 8 HOH A 31 831 11 HOH HOH . GA 8 HOH A 32 832 36 HOH HOH . GA 8 HOH A 33 833 64 HOH HOH . GA 8 HOH A 34 834 2 HOH HOH . GA 8 HOH A 35 835 32 HOH HOH . GA 8 HOH A 36 836 65 HOH HOH . GA 8 HOH A 37 837 52 HOH HOH . GA 8 HOH A 38 838 54 HOH HOH . GA 8 HOH A 39 839 29 HOH HOH . HA 8 HOH B 1 801 9 HOH HOH . HA 8 HOH B 2 802 22 HOH HOH . HA 8 HOH B 3 803 46 HOH HOH . HA 8 HOH B 4 804 20 HOH HOH . HA 8 HOH B 5 805 61 HOH HOH . HA 8 HOH B 6 806 63 HOH HOH . HA 8 HOH B 7 807 5 HOH HOH . HA 8 HOH B 8 808 26 HOH HOH . HA 8 HOH B 9 809 45 HOH HOH . HA 8 HOH B 10 810 34 HOH HOH . HA 8 HOH B 11 811 10 HOH HOH . HA 8 HOH B 12 812 17 HOH HOH . HA 8 HOH B 13 813 50 HOH HOH . HA 8 HOH B 14 814 43 HOH HOH . HA 8 HOH B 15 815 25 HOH HOH . HA 8 HOH B 16 816 6 HOH HOH . HA 8 HOH B 17 817 60 HOH HOH . HA 8 HOH B 18 818 28 HOH HOH . HA 8 HOH B 19 819 21 HOH HOH . HA 8 HOH B 20 820 23 HOH HOH . HA 8 HOH B 21 821 33 HOH HOH . HA 8 HOH B 22 822 53 HOH HOH . HA 8 HOH B 23 823 55 HOH HOH . HA 8 HOH B 24 824 30 HOH HOH . HA 8 HOH B 25 825 66 HOH HOH . HA 8 HOH B 26 826 56 HOH HOH . HA 8 HOH B 27 827 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . I 5 32.739 32.856 -7.601 1 80.57 ? C1 PGE 706 A 1 HETATM 2 O O1 PGE . . . I 5 32.185 34.073 -7.109 1 73.34 ? O1 PGE 706 A 1 HETATM 3 C C2 PGE . . . I 5 33.845 33.155 -8.607 1 93.75 ? C2 PGE 706 A 1 HETATM 4 O O2 PGE . . . I 5 34.239 32.024 -9.366 1 95.47 ? O2 PGE 706 A 1 HETATM 5 C C3 PGE . . . I 5 33.356 31.581 -10.381 1 86.74 ? C3 PGE 706 A 1 HETATM 6 C C4 PGE . . . I 5 33.867 31.781 -11.782 1 82.32 ? C4 PGE 706 A 1 HETATM 7 O O4 PGE . . . I 5 35.713 33.3 -14.148 1 85.77 ? O4 PGE 706 A 1 HETATM 8 C C6 PGE . . . I 5 34.52 33.969 -13.801 1 88.9 ? C6 PGE 706 A 1 HETATM 9 C C5 PGE . . . I 5 33.387 32.951 -13.784 1 84.91 ? C5 PGE 706 A 1 HETATM 10 O O3 PGE . . . I 5 33.02 32.687 -12.444 1 87.27 ? O3 PGE 706 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #