data_8W0P
#
_model_server_result.job_id            2EdXSW66RgHvUfhQO0D6zA 
_model_server_result.datetime_utc      '2025-07-16 21:38:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    8W0P 
#
_exptl.entry_id    8W0P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W0P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     8W0P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SAM A 1 1001 1001 SAM SAM . 
E 3 SAM B 1 1001 1001 SAM SAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . E 3 210.093 210.303 168.175 1 46.71 ? N SAM 1001 B 1 
HETATM 2 C CA SAM . . . E 3 211.454 210.237 167.663 1 46.71 ? CA SAM 1001 B 1 
HETATM 3 C C SAM . . . E 3 211.828 208.806 167.297 1 46.71 ? C SAM 1001 B 1 
HETATM 4 O O SAM . . . E 3 211.115 207.859 167.626 1 46.71 ? O SAM 1001 B 1 
HETATM 5 O OXT SAM . . . E 3 212.853 208.565 166.663 1 46.71 ? OXT SAM 1001 B 1 
HETATM 6 C CB SAM . . . E 3 212.438 210.787 168.686 1 46.71 ? CB SAM 1001 B 1 
HETATM 7 C CG SAM . . . E 3 212.806 209.796 169.781 1 46.71 ? CG SAM 1001 B 1 
HETATM 8 S SD SAM . . . E 3 213.7 210.587 171.138 1 46.71 ? SD SAM 1001 B 1 
HETATM 9 C CE SAM . . . E 3 212.563 211.941 171.516 1 46.71 ? CE SAM 1001 B 1 
HETATM 10 C C5' SAM . . . E 3 215.025 211.455 170.26 1 46.71 ? C5' SAM 1001 B 1 
HETATM 11 C C4' SAM . . . E 3 216.295 211.534 171.097 1 46.71 ? C4' SAM 1001 B 1 
HETATM 12 O O4' SAM . . . E 3 217.316 212.216 170.391 1 46.71 ? O4' SAM 1001 B 1 
HETATM 13 C C3' SAM . . . E 3 216.023 212.297 172.382 1 46.71 ? C3' SAM 1001 B 1 
HETATM 14 O O3' SAM . . . E 3 216.245 211.464 173.494 1 46.71 ? O3' SAM 1001 B 1 
HETATM 15 C C2' SAM . . . E 3 216.994 213.454 172.396 1 46.71 ? C2' SAM 1001 B 1 
HETATM 16 O O2' SAM . . . E 3 217.765 213.415 173.574 1 46.71 ? O2' SAM 1001 B 1 
HETATM 17 C C1' SAM . . . E 3 217.882 213.239 171.187 1 46.71 ? C1' SAM 1001 B 1 
HETATM 18 N N9 SAM . . . E 3 218.002 214.467 170.384 1 46.71 ? N9 SAM 1001 B 1 
HETATM 19 C C8 SAM . . . E 3 217.372 214.703 169.194 1 46.71 ? C8 SAM 1001 B 1 
HETATM 20 N N7 SAM . . . E 3 217.728 215.93 168.754 1 46.71 ? N7 SAM 1001 B 1 
HETATM 21 C C5 SAM . . . E 3 218.571 216.482 169.65 1 46.71 ? C5 SAM 1001 B 1 
HETATM 22 C C6 SAM . . . E 3 219.215 217.707 169.683 1 46.71 ? C6 SAM 1001 B 1 
HETATM 23 N N6 SAM . . . E 3 219.038 218.574 168.694 1 46.71 ? N6 SAM 1001 B 1 
HETATM 24 N N1 SAM . . . E 3 220.038 218.016 170.744 1 46.71 ? N1 SAM 1001 B 1 
HETATM 25 C C2 SAM . . . E 3 220.21 217.102 171.764 1 46.71 ? C2 SAM 1001 B 1 
HETATM 26 N N3 SAM . . . E 3 219.562 215.884 171.724 1 46.71 ? N3 SAM 1001 B 1 
HETATM 27 C C4 SAM . . . E 3 218.756 215.574 170.681 1 46.71 ? C4 SAM 1001 B 1 
#
_model_server_stats.io_time_ms              95 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#