data_8W0X # _model_server_result.job_id ZjIjOQruWCfmebvByIDb7g _model_server_result.datetime_utc '2024-10-11 03:16:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":702}' # _entry.id 8W0X # _exptl.entry_id 8W0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W0X _cell.length_a 79.911 _cell.length_b 79.911 _cell.length_c 294.567 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 K N N ? 9 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 5 4 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 6 6 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 6 7 6 MAN MAN C1 O1 . O3 HO3 . sing 10 ? 6 8 6 MAN MAN C1 O1 . O6 HO6 . sing 11 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 13 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 14 ? 8 2 1 NAG NAG C1 O1 . O3 HO3 . sing 15 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 16 ? 8 4 3 MAN BMA C1 O1 . O3 HO3 . sing 17 ? 8 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG A 1 NAG 4 n D NAG 2 A 2 NAG A 2 NAG 4 n E NAG 1 B 1 NAG B 1 NAG 4 n E NAG 2 B 2 NAG B 2 NAG 5 n F NAG 1 D 1 NAG D 1 NAG 5 n F NAG 2 D 2 NAG D 2 NAG 5 n F BMA 3 D 3 BMA D 3 BMA 6 n G NAG 1 E 1 NAG E 1 NAG 6 n G NAG 2 E 2 NAG E 2 NAG 6 n G BMA 3 E 3 BMA E 3 BMA 6 n G MAN 4 E 4 MAN E 4 MAN 6 n G MAN 5 E 5 MAN E 5 MAN 6 n G MAN 6 E 6 MAN E 6 MAN 6 n G MAN 7 E 7 MAN E 7 MAN 6 n G MAN 8 E 8 MAN E 8 MAN 7 n H NAG 1 F 1 NAG F 1 NAG 7 n H NAG 2 F 2 NAG F 2 NAG 7 n H BMA 3 F 3 BMA F 3 BMA 7 n H MAN 4 F 4 MAN F 4 MAN 8 n I NAG 1 G 1 NAG G 1 NAG 8 n I NAG 2 G 2 NAG G 2 NAG 8 n I BMA 3 G 3 BMA G 3 BMA 8 n I MAN 4 G 4 MAN G 4 MAN 8 n I MAN 5 G 5 MAN G 5 MAN 4 n J NAG 1 I 1 NAG I 1 NAG 4 n J NAG 2 I 2 NAG I 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 C CYS 429 1_555 A SG CYS 120 C CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 69 C CYS 452 1_555 A SG CYS 237 C CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 76 C CYS 459 1_555 A SG CYS 103 C CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 111 C CYS 494 1_555 A SG CYS 181 C CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 125 C CYS 508 1_555 A SG CYS 169 C CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 186 C CYS 569 1_555 A SG CYS 214 C CYS 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 A SG CYS 198 C CYS 581 1_555 A SG CYS 202 C CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 A SG CYS 224 C CYS 607 1_555 A SG CYS 261 C CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf10 B SG CYS 156 H CYS 140 1_555 B SG CYS 212 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf12 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 34 C ASN 417 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 40 C ASN 423 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 A ND2 ASN 47 C ASN 430 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale4 A ND2 ASN 65 C ASN 448 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale5 A ND2 ASN 149 C ASN 532 1_555 K C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale6 A ND2 ASN 157 C ASN 540 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 A ND2 ASN 173 C ASN 556 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale8 A ND2 ASN 193 C ASN 576 1_555 L C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 A ND2 ASN 240 C ASN 623 1_555 J C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale11 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale12 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale13 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale14 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale15 G O4 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale16 G O3 BMA . E BMA 3 1_555 G C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale17 G O6 BMA . E BMA 3 1_555 G C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale18 G O2 MAN . E MAN 4 1_555 G C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale19 G O3 MAN . E MAN 6 1_555 G C1 MAN . E MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 G O6 MAN . E MAN 6 1_555 G C1 MAN . E MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale21 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale22 H O4 NAG . F NAG 2 1_555 H C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale23 H O3 BMA . F BMA 3 1_555 H C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale24 I O3 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale25 I O4 NAG . G NAG 2 1_555 I C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale26 I O3 BMA . G BMA 3 1_555 I C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale27 I O6 BMA . G BMA 3 1_555 I C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale28 J O4 NAG . I NAG 1 1_555 J C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8W0X _atom_sites.fract_transf_matrix[1][1] 0.012514 _atom_sites.fract_transf_matrix[1][2] 0.007225 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 9 NAG C 1 701 5321 NAG NAG . L 9 NAG C 1 702 5761 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 9 -67.473 2.886 -89.436 1 190.88 ? C1 NAG 702 C 1 HETATM 2 C C2 NAG . . . L 9 -68.131 1.595 -88.916 1 190.5 ? C2 NAG 702 C 1 HETATM 3 C C3 NAG . . . L 9 -67.287 0.358 -89.242 1 189.39 ? C3 NAG 702 C 1 HETATM 4 C C4 NAG . . . L 9 -66.97 0.333 -90.733 1 190.72 ? C4 NAG 702 C 1 HETATM 5 C C5 NAG . . . L 9 -66.323 1.662 -91.139 1 191.39 ? C5 NAG 702 C 1 HETATM 6 C C6 NAG . . . L 9 -65.918 1.687 -92.611 1 188.36 ? C6 NAG 702 C 1 HETATM 7 C C7 NAG . . . L 9 -67.596 2.386 -86.647 1 187.09 ? C7 NAG 702 C 1 HETATM 8 C C8 NAG . . . L 9 -66.346 1.73 -86.129 1 182.89 ? C8 NAG 702 C 1 HETATM 9 N N2 NAG . . . L 9 -68.348 1.663 -87.479 1 189.62 ? N2 NAG 702 C 1 HETATM 10 O O3 NAG . . . L 9 -67.966 -0.853 -88.859 1 179.36 ? O3 NAG 702 C 1 HETATM 11 O O4 NAG . . . L 9 -66.106 -0.777 -91.019 1 189.65 ? O4 NAG 702 C 1 HETATM 12 O O5 NAG . . . L 9 -67.213 2.75 -90.84 1 191.24 ? O5 NAG 702 C 1 HETATM 13 O O6 NAG . . . L 9 -64.78 0.834 -92.8 1 188.92 ? O6 NAG 702 C 1 HETATM 14 O O7 NAG . . . L 9 -67.915 3.519 -86.316 1 184.91 ? O7 NAG 702 C 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #