data_8W1H # _model_server_result.job_id '_J5oWbGpYu_4ezqVDdEQTg' _model_server_result.datetime_utc '2024-11-15 03:43:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 8W1H # _exptl.entry_id 8W1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W1H _cell.length_a 143.804 _cell.length_b 154.754 _cell.length_c 88.254 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 175 n n CHA C4D HEM doub 176 n n CHA HHA HEM sing 177 n n CHB C4A HEM sing 178 n n CHB C1B HEM doub 179 n n CHB HHB HEM sing 180 n n CHC C4B HEM sing 181 n n CHC C1C HEM doub 182 n n CHC HHC HEM sing 183 n n CHD C4C HEM doub 184 n n CHD C1D HEM sing 185 n n CHD HHD HEM sing 186 n n C1A C2A HEM doub 187 n y C1A NA HEM sing 188 n y C2A C3A HEM sing 189 n y C2A CAA HEM sing 190 n n C3A C4A HEM doub 191 n y C3A CMA HEM sing 192 n n C4A NA HEM sing 193 n y CMA HMA HEM sing 194 n n CMA HMAA HEM sing 195 n n CMA HMAB HEM sing 196 n n CAA CBA HEM sing 197 n n CAA HAA HEM sing 198 n n CAA HAAA HEM sing 199 n n CBA CGA HEM sing 200 n n CBA HBA HEM sing 201 n n CBA HBAA HEM sing 202 n n CGA O1A HEM doub 203 n n CGA O2A HEM sing 204 n n C1B C2B HEM sing 205 n n C1B NB HEM sing 206 n n C2B C3B HEM doub 207 n n C2B CMB HEM sing 208 n n C3B C4B HEM sing 209 n n C3B CAB HEM sing 210 n n C4B NB HEM doub 211 n n CMB HMB HEM sing 212 n n CMB HMBA HEM sing 213 n n CMB HMBB HEM sing 214 n n CAB CBB HEM doub 215 n n CAB HAB HEM sing 216 n n CBB HBB HEM sing 217 n n CBB HBBA HEM sing 218 n n C1C C2C HEM sing 219 n y C1C NC HEM sing 220 n y C2C C3C HEM doub 221 n y C2C CMC HEM sing 222 n n C3C C4C HEM sing 223 n y C3C CAC HEM sing 224 n n C4C NC HEM sing 225 n y CMC HMC HEM sing 226 n n CMC HMCA HEM sing 227 n n CMC HMCB HEM sing 228 n n CAC CBC HEM doub 229 n n CAC HAC HEM sing 230 n n CBC HBC HEM sing 231 n n CBC HBCA HEM sing 232 n n C1D C2D HEM sing 233 n n C1D ND HEM doub 234 n n C2D C3D HEM doub 235 n n C2D CMD HEM sing 236 n n C3D C4D HEM sing 237 n n C3D CAD HEM sing 238 n n C4D ND HEM sing 239 n n CMD HMD HEM sing 240 n n CMD HMDA HEM sing 241 n n CMD HMDB HEM sing 242 n n CAD CBD HEM sing 243 n n CAD HAD HEM sing 244 n n CAD HADA HEM sing 245 n n CBD CGD HEM sing 246 n n CBD HBD HEM sing 247 n n CBD HBDA HEM sing 248 n n CGD O1D HEM doub 249 n n CGD O2D HEM sing 250 n n O2A H2A HEM sing 251 n n O2D H2D HEM sing 252 n n FE NA HEM sing 253 n n FE NB HEM sing 254 n n FE NC HEM sing 255 n n FE ND HEM sing 256 n n # _atom_sites.entry_id 8W1H _atom_sites.fract_transf_matrix[1][1] 0.006954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 ZIQ A 1 402 402 ZIQ ZIQ . G 4 A1AEY A 1 403 403 A1AEY 15d . H 2 HEM B 1 401 401 HEM HEM . I 3 ZIQ B 1 402 402 ZIQ ZIQ . J 4 A1AEY B 1 403 403 A1AEY 15d . K 2 HEM C 1 401 401 HEM HEM . L 3 ZIQ C 1 402 402 ZIQ ZIQ . M 4 A1AEY C 1 403 403 A1AEY 15d . N 2 HEM D 1 401 401 HEM HEM . O 3 ZIQ D 1 402 402 ZIQ ZIQ . P 4 A1AEY D 1 403 403 A1AEY 15d . Q 5 HOH A 1 501 34 HOH HOH . Q 5 HOH A 2 502 91 HOH HOH . Q 5 HOH A 3 503 58 HOH HOH . Q 5 HOH A 4 504 81 HOH HOH . Q 5 HOH A 5 505 10 HOH HOH . Q 5 HOH A 6 506 72 HOH HOH . Q 5 HOH A 7 507 86 HOH HOH . Q 5 HOH A 8 508 4 HOH HOH . Q 5 HOH A 9 509 26 HOH HOH . Q 5 HOH A 10 510 12 HOH HOH . Q 5 HOH A 11 511 21 HOH HOH . Q 5 HOH A 12 512 5 HOH HOH . Q 5 HOH A 13 513 76 HOH HOH . Q 5 HOH A 14 514 52 HOH HOH . Q 5 HOH A 15 515 83 HOH HOH . Q 5 HOH A 16 516 109 HOH HOH . Q 5 HOH A 17 517 63 HOH HOH . Q 5 HOH A 18 518 54 HOH HOH . Q 5 HOH A 19 519 28 HOH HOH . Q 5 HOH A 20 520 95 HOH HOH . Q 5 HOH A 21 521 103 HOH HOH . Q 5 HOH A 22 522 36 HOH HOH . Q 5 HOH A 23 523 82 HOH HOH . Q 5 HOH A 24 524 30 HOH HOH . Q 5 HOH A 25 525 101 HOH HOH . Q 5 HOH A 26 526 85 HOH HOH . Q 5 HOH A 27 527 23 HOH HOH . Q 5 HOH A 28 528 33 HOH HOH . Q 5 HOH A 29 529 60 HOH HOH . Q 5 HOH A 30 530 108 HOH HOH . Q 5 HOH A 31 531 62 HOH HOH . Q 5 HOH A 32 532 73 HOH HOH . Q 5 HOH A 33 533 39 HOH HOH . Q 5 HOH A 34 534 100 HOH HOH . Q 5 HOH A 35 535 37 HOH HOH . Q 5 HOH A 36 536 68 HOH HOH . Q 5 HOH A 37 537 29 HOH HOH . Q 5 HOH A 38 538 64 HOH HOH . Q 5 HOH A 39 539 48 HOH HOH . Q 5 HOH A 40 540 43 HOH HOH . Q 5 HOH A 41 541 40 HOH HOH . Q 5 HOH A 42 542 102 HOH HOH . R 5 HOH B 1 501 61 HOH HOH . R 5 HOH B 2 502 7 HOH HOH . R 5 HOH B 3 503 11 HOH HOH . R 5 HOH B 4 504 13 HOH HOH . R 5 HOH B 5 505 110 HOH HOH . R 5 HOH B 6 506 104 HOH HOH . R 5 HOH B 7 507 22 HOH HOH . R 5 HOH B 8 508 69 HOH HOH . R 5 HOH B 9 509 53 HOH HOH . R 5 HOH B 10 510 75 HOH HOH . R 5 HOH B 11 511 57 HOH HOH . R 5 HOH B 12 512 6 HOH HOH . R 5 HOH B 13 513 41 HOH HOH . R 5 HOH B 14 514 71 HOH HOH . R 5 HOH B 15 515 25 HOH HOH . R 5 HOH B 16 516 96 HOH HOH . R 5 HOH B 17 517 92 HOH HOH . R 5 HOH B 18 518 44 HOH HOH . R 5 HOH B 19 519 70 HOH HOH . R 5 HOH B 20 520 111 HOH HOH . R 5 HOH B 21 521 15 HOH HOH . R 5 HOH B 22 522 97 HOH HOH . R 5 HOH B 23 523 90 HOH HOH . R 5 HOH B 24 524 80 HOH HOH . R 5 HOH B 25 525 1 HOH HOH . R 5 HOH B 26 526 78 HOH HOH . R 5 HOH B 27 527 45 HOH HOH . R 5 HOH B 28 528 42 HOH HOH . R 5 HOH B 29 529 89 HOH HOH . R 5 HOH B 30 530 32 HOH HOH . R 5 HOH B 31 531 35 HOH HOH . R 5 HOH B 32 532 20 HOH HOH . R 5 HOH B 33 533 65 HOH HOH . R 5 HOH B 34 534 105 HOH HOH . R 5 HOH B 35 535 99 HOH HOH . S 5 HOH C 1 501 14 HOH HOH . S 5 HOH C 2 502 31 HOH HOH . S 5 HOH C 3 503 106 HOH HOH . S 5 HOH C 4 504 9 HOH HOH . S 5 HOH C 5 505 3 HOH HOH . S 5 HOH C 6 506 49 HOH HOH . S 5 HOH C 7 507 56 HOH HOH . S 5 HOH C 8 508 87 HOH HOH . S 5 HOH C 9 509 17 HOH HOH . S 5 HOH C 10 510 79 HOH HOH . S 5 HOH C 11 511 50 HOH HOH . S 5 HOH C 12 512 2 HOH HOH . S 5 HOH C 13 513 94 HOH HOH . T 5 HOH D 1 501 38 HOH HOH . T 5 HOH D 2 502 24 HOH HOH . T 5 HOH D 3 503 8 HOH HOH . T 5 HOH D 4 504 27 HOH HOH . T 5 HOH D 5 505 107 HOH HOH . T 5 HOH D 6 506 47 HOH HOH . T 5 HOH D 7 507 66 HOH HOH . T 5 HOH D 8 508 51 HOH HOH . T 5 HOH D 9 509 88 HOH HOH . T 5 HOH D 10 510 112 HOH HOH . T 5 HOH D 11 511 77 HOH HOH . T 5 HOH D 12 512 19 HOH HOH . T 5 HOH D 13 513 93 HOH HOH . T 5 HOH D 14 514 59 HOH HOH . T 5 HOH D 15 515 113 HOH HOH . T 5 HOH D 16 516 67 HOH HOH . T 5 HOH D 17 517 84 HOH HOH . T 5 HOH D 18 518 18 HOH HOH . T 5 HOH D 19 519 46 HOH HOH . T 5 HOH D 20 520 74 HOH HOH . T 5 HOH D 21 521 16 HOH HOH . T 5 HOH D 22 522 55 HOH HOH . T 5 HOH D 23 523 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . N 2 -2.808 -37.326 -32.59 1 63.4 ? CHA HEM 401 D 1 HETATM 2 C CHB HEM . . . N 2 -2.514 -40.264 -28.806 1 63.37 ? CHB HEM 401 D 1 HETATM 3 C CHC HEM . . . N 2 2.201 -39.209 -28.376 1 64.04 ? CHC HEM 401 D 1 HETATM 4 C CHD HEM . . . N 2 1.64 -35.659 -31.626 1 60.99 ? CHD HEM 401 D 1 HETATM 5 C C1A HEM . . . N 2 -3.124 -38.238 -31.61 1 63.56 ? C1A HEM 401 D 1 HETATM 6 C C2A HEM . . . N 2 -4.395 -38.828 -31.439 1 73.43 ? C2A HEM 401 D 1 HETATM 7 C C3A HEM . . . N 2 -4.317 -39.643 -30.381 1 70.96 ? C3A HEM 401 D 1 HETATM 8 C C4A HEM . . . N 2 -2.992 -39.56 -29.878 1 68.61 ? C4A HEM 401 D 1 HETATM 9 C CMA HEM . . . N 2 -5.431 -40.5 -29.834 1 72.65 ? CMA HEM 401 D 1 HETATM 10 C CAA HEM . . . N 2 -5.62 -38.635 -32.295 1 71.7 ? CAA HEM 401 D 1 HETATM 11 C CBA HEM . . . N 2 -6.359 -37.37 -31.861 1 80.15 ? CBA HEM 401 D 1 HETATM 12 C CGA HEM . . . N 2 -7.116 -37.63 -30.57 1 87.19 ? CGA HEM 401 D 1 HETATM 13 O O1A HEM . . . N 2 -6.756 -37.103 -29.492 1 87.43 ? O1A HEM 401 D 1 HETATM 14 O O2A HEM . . . N 2 -8.101 -38.398 -30.57 1 90.17 ? O2A HEM 401 D 1 HETATM 15 C C1B HEM . . . N 2 -1.179 -40.232 -28.406 1 66.27 ? C1B HEM 401 D 1 HETATM 16 C C2B HEM . . . N 2 -0.698 -41.088 -27.398 1 62.88 ? C2B HEM 401 D 1 HETATM 17 C C3B HEM . . . N 2 0.639 -40.828 -27.273 1 65.55 ? C3B HEM 401 D 1 HETATM 18 C C4B HEM . . . N 2 0.933 -39.754 -28.226 1 59.22 ? C4B HEM 401 D 1 HETATM 19 C CMB HEM . . . N 2 -1.529 -42.089 -26.621 1 72.5 ? CMB HEM 401 D 1 HETATM 20 C CAB HEM . . . N 2 1.633 -41.339 -26.294 1 66.84 ? CAB HEM 401 D 1 HETATM 21 C CBB HEM . . . N 2 1.267 -41.803 -25.107 1 69.6 ? CBB HEM 401 D 1 HETATM 22 C C1C HEM . . . N 2 2.473 -38.133 -29.184 1 64.64 ? C1C HEM 401 D 1 HETATM 23 C C2C HEM . . . N 2 3.694 -37.462 -29.278 1 68.52 ? C2C HEM 401 D 1 HETATM 24 C C3C HEM . . . N 2 3.543 -36.455 -30.215 1 64.49 ? C3C HEM 401 D 1 HETATM 25 C C4C HEM . . . N 2 2.194 -36.496 -30.672 1 65.98 ? C4C HEM 401 D 1 HETATM 26 C CMC HEM . . . N 2 4.955 -37.806 -28.542 1 69.04 ? CMC HEM 401 D 1 HETATM 27 C CAC HEM . . . N 2 4.605 -35.513 -30.517 1 62.2 ? CAC HEM 401 D 1 HETATM 28 C CBC HEM . . . N 2 4.349 -34.237 -30.763 1 60.7 ? CBC HEM 401 D 1 HETATM 29 C C1D HEM . . . N 2 0.387 -35.873 -32.147 1 62.49 ? C1D HEM 401 D 1 HETATM 30 C C2D HEM . . . N 2 -0.1 -35.128 -33.304 1 62.64 ? C2D HEM 401 D 1 HETATM 31 C C3D HEM . . . N 2 -1.332 -35.581 -33.56 1 63.25 ? C3D HEM 401 D 1 HETATM 32 C C4D HEM . . . N 2 -1.597 -36.646 -32.597 1 62.77 ? C4D HEM 401 D 1 HETATM 33 C CMD HEM . . . N 2 0.566 -34.024 -34.054 1 60.58 ? CMD HEM 401 D 1 HETATM 34 C CAD HEM . . . N 2 -2.202 -35.109 -34.685 1 62.29 ? CAD HEM 401 D 1 HETATM 35 C CBD HEM . . . N 2 -1.856 -36.098 -35.827 1 59.07 ? CBD HEM 401 D 1 HETATM 36 C CGD HEM . . . N 2 -2.625 -35.907 -37.115 1 65.24 ? CGD HEM 401 D 1 HETATM 37 O O1D HEM . . . N 2 -3.756 -35.311 -37.225 1 61.61 ? O1D HEM 401 D 1 HETATM 38 O O2D HEM . . . N 2 -2.139 -36.445 -38.106 1 58.39 ? O2D HEM 401 D 1 HETATM 39 N NA HEM . . . N 2 -2.278 -38.695 -30.626 1 68.33 ? NA HEM 401 D 1 HETATM 40 N NB HEM . . . N 2 -0.176 -39.482 -28.876 1 62.75 ? NB HEM 401 D 1 HETATM 41 N NC HEM . . . N 2 1.601 -37.538 -30.029 1 66.81 ? NC HEM 401 D 1 HETATM 42 N ND HEM . . . N 2 -0.524 -36.786 -31.772 1 65.92 ? ND HEM 401 D 1 HETATM 43 FE FE HEM . . . N 2 -0.342 -38.102 -30.426 1 62.64 ? FE HEM 401 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #