data_8W1H # _model_server_result.job_id gAb7b0Cu6Q3brcEb0Y8btg _model_server_result.datetime_utc '2024-11-15 04:04:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 8W1H # _exptl.entry_id 8W1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.376 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-1-[(imidazolidin-1-yl)methyl]-6-(1H-indol-3-yl)-1H-benzotriazole _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W1H _cell.length_a 143.804 _cell.length_b 154.754 _cell.length_c 88.254 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C18 H18 N6' _chem_comp.formula_weight 318.376 _chem_comp.id A1AEY _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-1-[(imidazolidin-1-yl)methyl]-6-(1H-indol-3-yl)-1H-benzotriazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C18 A1AEY doub 1 n y C1 C2 A1AEY sing 2 n y C18 C17 A1AEY sing 3 n y C2 C3 A1AEY doub 4 n y C17 N6 A1AEY sing 5 n y C17 C4 A1AEY doub 6 n y N6 C16 A1AEY sing 7 n y C3 C4 A1AEY sing 8 n y C4 C5 A1AEY sing 9 n y C16 C5 A1AEY doub 10 n y C5 C6 A1AEY sing 11 n n C6 C15 A1AEY doub 12 n y C6 C7 A1AEY sing 13 n y C15 C14 A1AEY sing 14 n y C12 N5 A1AEY sing 15 n n C12 C11 A1AEY sing 16 n n N4 C11 A1AEY sing 17 n n N4 C10 A1AEY sing 18 n n N4 C13 A1AEY sing 19 n n N5 C13 A1AEY sing 20 n n C10 N3 A1AEY sing 21 n n C7 C8 A1AEY doub 22 n y C14 N3 A1AEY sing 23 n y C14 C9 A1AEY doub 24 n y N3 N2 A1AEY sing 25 n y C8 C9 A1AEY sing 26 n y C9 N1 A1AEY sing 27 n y N2 N1 A1AEY doub 28 n y C1 H1 A1AEY sing 29 n n C2 H2 A1AEY sing 30 n n C3 H3 A1AEY sing 31 n n C7 H4 A1AEY sing 32 n n C8 H5 A1AEY sing 33 n n C10 H6 A1AEY sing 34 n n C10 H7 A1AEY sing 35 n n C11 H9 A1AEY sing 36 n n C11 H10 A1AEY sing 37 n n C12 H11 A1AEY sing 38 n n C12 H12 A1AEY sing 39 n n N5 H13 A1AEY sing 40 n n C13 H15 A1AEY sing 41 n n C13 H16 A1AEY sing 42 n n C15 H17 A1AEY sing 43 n n C16 H18 A1AEY sing 44 n n N6 H19 A1AEY sing 45 n n C18 H20 A1AEY sing 46 n n # _atom_sites.entry_id 8W1H _atom_sites.fract_transf_matrix[1][1] 0.006954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 ZIQ A 1 402 402 ZIQ ZIQ . G 4 A1AEY A 1 403 403 A1AEY 15d . H 2 HEM B 1 401 401 HEM HEM . I 3 ZIQ B 1 402 402 ZIQ ZIQ . J 4 A1AEY B 1 403 403 A1AEY 15d . K 2 HEM C 1 401 401 HEM HEM . L 3 ZIQ C 1 402 402 ZIQ ZIQ . M 4 A1AEY C 1 403 403 A1AEY 15d . N 2 HEM D 1 401 401 HEM HEM . O 3 ZIQ D 1 402 402 ZIQ ZIQ . P 4 A1AEY D 1 403 403 A1AEY 15d . Q 5 HOH A 1 501 34 HOH HOH . Q 5 HOH A 2 502 91 HOH HOH . Q 5 HOH A 3 503 58 HOH HOH . Q 5 HOH A 4 504 81 HOH HOH . Q 5 HOH A 5 505 10 HOH HOH . Q 5 HOH A 6 506 72 HOH HOH . Q 5 HOH A 7 507 86 HOH HOH . Q 5 HOH A 8 508 4 HOH HOH . Q 5 HOH A 9 509 26 HOH HOH . Q 5 HOH A 10 510 12 HOH HOH . Q 5 HOH A 11 511 21 HOH HOH . Q 5 HOH A 12 512 5 HOH HOH . Q 5 HOH A 13 513 76 HOH HOH . Q 5 HOH A 14 514 52 HOH HOH . Q 5 HOH A 15 515 83 HOH HOH . Q 5 HOH A 16 516 109 HOH HOH . Q 5 HOH A 17 517 63 HOH HOH . Q 5 HOH A 18 518 54 HOH HOH . Q 5 HOH A 19 519 28 HOH HOH . Q 5 HOH A 20 520 95 HOH HOH . Q 5 HOH A 21 521 103 HOH HOH . Q 5 HOH A 22 522 36 HOH HOH . Q 5 HOH A 23 523 82 HOH HOH . Q 5 HOH A 24 524 30 HOH HOH . Q 5 HOH A 25 525 101 HOH HOH . Q 5 HOH A 26 526 85 HOH HOH . Q 5 HOH A 27 527 23 HOH HOH . Q 5 HOH A 28 528 33 HOH HOH . Q 5 HOH A 29 529 60 HOH HOH . Q 5 HOH A 30 530 108 HOH HOH . Q 5 HOH A 31 531 62 HOH HOH . Q 5 HOH A 32 532 73 HOH HOH . Q 5 HOH A 33 533 39 HOH HOH . Q 5 HOH A 34 534 100 HOH HOH . Q 5 HOH A 35 535 37 HOH HOH . Q 5 HOH A 36 536 68 HOH HOH . Q 5 HOH A 37 537 29 HOH HOH . Q 5 HOH A 38 538 64 HOH HOH . Q 5 HOH A 39 539 48 HOH HOH . Q 5 HOH A 40 540 43 HOH HOH . Q 5 HOH A 41 541 40 HOH HOH . Q 5 HOH A 42 542 102 HOH HOH . R 5 HOH B 1 501 61 HOH HOH . R 5 HOH B 2 502 7 HOH HOH . R 5 HOH B 3 503 11 HOH HOH . R 5 HOH B 4 504 13 HOH HOH . R 5 HOH B 5 505 110 HOH HOH . R 5 HOH B 6 506 104 HOH HOH . R 5 HOH B 7 507 22 HOH HOH . R 5 HOH B 8 508 69 HOH HOH . R 5 HOH B 9 509 53 HOH HOH . R 5 HOH B 10 510 75 HOH HOH . R 5 HOH B 11 511 57 HOH HOH . R 5 HOH B 12 512 6 HOH HOH . R 5 HOH B 13 513 41 HOH HOH . R 5 HOH B 14 514 71 HOH HOH . R 5 HOH B 15 515 25 HOH HOH . R 5 HOH B 16 516 96 HOH HOH . R 5 HOH B 17 517 92 HOH HOH . R 5 HOH B 18 518 44 HOH HOH . R 5 HOH B 19 519 70 HOH HOH . R 5 HOH B 20 520 111 HOH HOH . R 5 HOH B 21 521 15 HOH HOH . R 5 HOH B 22 522 97 HOH HOH . R 5 HOH B 23 523 90 HOH HOH . R 5 HOH B 24 524 80 HOH HOH . R 5 HOH B 25 525 1 HOH HOH . R 5 HOH B 26 526 78 HOH HOH . R 5 HOH B 27 527 45 HOH HOH . R 5 HOH B 28 528 42 HOH HOH . R 5 HOH B 29 529 89 HOH HOH . R 5 HOH B 30 530 32 HOH HOH . R 5 HOH B 31 531 35 HOH HOH . R 5 HOH B 32 532 20 HOH HOH . R 5 HOH B 33 533 65 HOH HOH . R 5 HOH B 34 534 105 HOH HOH . R 5 HOH B 35 535 99 HOH HOH . S 5 HOH C 1 501 14 HOH HOH . S 5 HOH C 2 502 31 HOH HOH . S 5 HOH C 3 503 106 HOH HOH . S 5 HOH C 4 504 9 HOH HOH . S 5 HOH C 5 505 3 HOH HOH . S 5 HOH C 6 506 49 HOH HOH . S 5 HOH C 7 507 56 HOH HOH . S 5 HOH C 8 508 87 HOH HOH . S 5 HOH C 9 509 17 HOH HOH . S 5 HOH C 10 510 79 HOH HOH . S 5 HOH C 11 511 50 HOH HOH . S 5 HOH C 12 512 2 HOH HOH . S 5 HOH C 13 513 94 HOH HOH . T 5 HOH D 1 501 38 HOH HOH . T 5 HOH D 2 502 24 HOH HOH . T 5 HOH D 3 503 8 HOH HOH . T 5 HOH D 4 504 27 HOH HOH . T 5 HOH D 5 505 107 HOH HOH . T 5 HOH D 6 506 47 HOH HOH . T 5 HOH D 7 507 66 HOH HOH . T 5 HOH D 8 508 51 HOH HOH . T 5 HOH D 9 509 88 HOH HOH . T 5 HOH D 10 510 112 HOH HOH . T 5 HOH D 11 511 77 HOH HOH . T 5 HOH D 12 512 19 HOH HOH . T 5 HOH D 13 513 93 HOH HOH . T 5 HOH D 14 514 59 HOH HOH . T 5 HOH D 15 515 113 HOH HOH . T 5 HOH D 16 516 67 HOH HOH . T 5 HOH D 17 517 84 HOH HOH . T 5 HOH D 18 518 18 HOH HOH . T 5 HOH D 19 519 46 HOH HOH . T 5 HOH D 20 520 74 HOH HOH . T 5 HOH D 21 521 16 HOH HOH . T 5 HOH D 22 522 55 HOH HOH . T 5 HOH D 23 523 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AEY . . . J 4 17.574 -60.935 -55.219 1 106.94 ? C1 A1AEY 403 B 1 HETATM 2 C C2 A1AEY . . . J 4 17.255 -60.773 -56.568 1 107.85 ? C2 A1AEY 403 B 1 HETATM 3 C C3 A1AEY . . . J 4 16.29 -59.872 -56.971 1 103.81 ? C3 A1AEY 403 B 1 HETATM 4 C C4 A1AEY . . . J 4 15.616 -59.118 -55.997 1 98.15 ? C4 A1AEY 403 B 1 HETATM 5 C C5 A1AEY . . . J 4 14.573 -58.117 -56.026 1 92.72 ? C5 A1AEY 403 B 1 HETATM 6 C C6 A1AEY . . . J 4 13.896 -57.573 -57.216 1 95 ? C6 A1AEY 403 B 1 HETATM 7 C C7 A1AEY . . . J 4 13.509 -56.218 -57.267 1 101.69 ? C7 A1AEY 403 B 1 HETATM 8 C C8 A1AEY . . . J 4 12.898 -55.661 -58.371 1 107.3 ? C8 A1AEY 403 B 1 HETATM 9 C C9 A1AEY . . . J 4 12.665 -56.49 -59.471 1 109.73 ? C9 A1AEY 403 B 1 HETATM 10 N N1 A1AEY . . . J 4 12.09 -56.241 -60.693 1 121.35 ? N1 A1AEY 403 B 1 HETATM 11 N N2 A1AEY . . . J 4 12.112 -57.349 -61.38 1 123.38 ? N2 A1AEY 403 B 1 HETATM 12 N N3 A1AEY . . . J 4 12.672 -58.323 -60.63 1 125.26 ? N3 A1AEY 403 B 1 HETATM 13 C C10 A1AEY . . . J 4 12.783 -59.697 -61.149 1 134.03 ? C10 A1AEY 403 B 1 HETATM 14 N N4 A1AEY . . . J 4 11.655 -60.595 -60.889 1 136.45 ? N4 A1AEY 403 B 1 HETATM 15 C C11 A1AEY . . . J 4 10.898 -60.365 -59.642 1 127.11 ? C11 A1AEY 403 B 1 HETATM 16 C C12 A1AEY . . . J 4 9.639 -61.187 -59.827 1 123.2 ? C12 A1AEY 403 B 1 HETATM 17 N N5 A1AEY . . . J 4 9.499 -61.272 -61.286 1 127.97 ? N5 A1AEY 403 B 1 HETATM 18 C C13 A1AEY . . . J 4 10.61 -60.542 -61.915 1 128.43 ? C13 A1AEY 403 B 1 HETATM 19 C C14 A1AEY . . . J 4 13.047 -57.826 -59.418 1 112.64 ? C14 A1AEY 403 B 1 HETATM 20 C C15 A1AEY . . . J 4 13.659 -58.366 -58.294 1 103 ? C15 A1AEY 403 B 1 HETATM 21 C C16 A1AEY . . . J 4 14.352 -57.759 -54.717 1 88.39 ? C16 A1AEY 403 B 1 HETATM 22 N N6 A1AEY . . . J 4 15.166 -58.468 -53.888 1 91.73 ? N6 A1AEY 403 B 1 HETATM 23 C C17 A1AEY . . . J 4 15.963 -59.304 -54.639 1 100.11 ? C17 A1AEY 403 B 1 HETATM 24 C C18 A1AEY . . . J 4 16.939 -60.211 -54.235 1 102.87 ? C18 A1AEY 403 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #