data_8W1U # _model_server_result.job_id OFoyW3wzghZAAa2PK0KE-A _model_server_result.datetime_utc '2024-11-20 08:36:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8W1U # _exptl.entry_id 8W1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 11-[1-(1H-pyrrolo[3,2-c]pyridine-7-carbonyl)piperidin-4-ylidene]-6,11-dihydro-5H-5lambda~6~-dibenzo[b,e]thiepine-5,5-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.53 _cell.angle_gamma 90 _cell.entry_id 8W1U _cell.length_a 45.956 _cell.length_b 54.066 _cell.length_c 112.877 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H23 N3 O3 S' _chem_comp.formula_weight 469.555 _chem_comp.id A1AFE _chem_comp.mon_nstd_flag . _chem_comp.name 11-[1-(1H-pyrrolo[3,2-c]pyridine-7-carbonyl)piperidin-4-ylidene]-6,11-dihydro-5H-5lambda~6~-dibenzo[b,e]thiepine-5,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NZ-804 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 A1AFE doub 1 n y C22 C21 A1AFE sing 2 n y C23 C24 A1AFE sing 3 n y C21 C20 A1AFE doub 4 n y C24 C25 A1AFE doub 5 n y O19 S17 A1AFE doub 6 n n C20 C25 A1AFE sing 7 n y C20 S17 A1AFE sing 8 n n C25 C09 A1AFE sing 9 n n C12 C11 A1AFE doub 10 n y C12 C13 A1AFE sing 11 n y C11 C10 A1AFE sing 12 n y C13 C14 A1AFE doub 13 n y S17 O18 A1AFE doub 14 n n S17 C16 A1AFE sing 15 n n C10 C09 A1AFE sing 16 n n C10 C15 A1AFE doub 17 n y C14 C15 A1AFE sing 18 n y C09 C06 A1AFE doub 19 n n C15 C16 A1AFE sing 20 n n C06 C07 A1AFE sing 21 n n C06 C05 A1AFE sing 22 n n C07 C08 A1AFE sing 23 n n C05 C04 A1AFE sing 24 n n C08 N03 A1AFE sing 25 n n C04 N03 A1AFE sing 26 n n N03 C02 A1AFE sing 27 n n C34 N33 A1AFE doub 28 n y C34 C26 A1AFE sing 29 n y C02 C26 A1AFE sing 30 n n C02 O01 A1AFE doub 31 n n N33 C32 A1AFE sing 32 n y C26 C27 A1AFE doub 33 n y C32 C31 A1AFE doub 34 n y C27 C31 A1AFE sing 35 n y C27 N28 A1AFE sing 36 n y C31 C30 A1AFE sing 37 n y N28 C29 A1AFE sing 38 n y C30 C29 A1AFE doub 39 n y C04 H1 A1AFE sing 40 n n C04 H2 A1AFE sing 41 n n C05 H3 A1AFE sing 42 n n C05 H4 A1AFE sing 43 n n C07 H5 A1AFE sing 44 n n C07 H6 A1AFE sing 45 n n C08 H7 A1AFE sing 46 n n C08 H8 A1AFE sing 47 n n C11 H9 A1AFE sing 48 n n C12 H10 A1AFE sing 49 n n C13 H11 A1AFE sing 50 n n C14 H12 A1AFE sing 51 n n C16 H13 A1AFE sing 52 n n C16 H14 A1AFE sing 53 n n C21 H15 A1AFE sing 54 n n C22 H16 A1AFE sing 55 n n C23 H17 A1AFE sing 56 n n C24 H18 A1AFE sing 57 n n C29 H19 A1AFE sing 58 n n C30 H20 A1AFE sing 59 n n C32 H21 A1AFE sing 60 n n C34 H22 A1AFE sing 61 n n N28 H23 A1AFE sing 62 n n # _atom_sites.entry_id 8W1U _atom_sites.fract_transf_matrix[1][1] 0.02176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AFE A 1 401 401 A1AFE Z0N . D 3 DMS A 1 402 402 DMS DMS . E 2 A1AFE B 1 401 401 A1AFE Z0N . F 3 DMS B 1 402 402 DMS DMS . G 4 HOH A 1 501 21 HOH HOH . G 4 HOH A 2 502 38 HOH HOH . G 4 HOH A 3 503 100 HOH HOH . G 4 HOH A 4 504 14 HOH HOH . G 4 HOH A 5 505 16 HOH HOH . G 4 HOH A 6 506 76 HOH HOH . G 4 HOH A 7 507 107 HOH HOH . G 4 HOH A 8 508 70 HOH HOH . G 4 HOH A 9 509 84 HOH HOH . G 4 HOH A 10 510 103 HOH HOH . G 4 HOH A 11 511 40 HOH HOH . G 4 HOH A 12 512 33 HOH HOH . G 4 HOH A 13 513 51 HOH HOH . G 4 HOH A 14 514 6 HOH HOH . G 4 HOH A 15 515 18 HOH HOH . G 4 HOH A 16 516 7 HOH HOH . G 4 HOH A 17 517 2 HOH HOH . G 4 HOH A 18 518 15 HOH HOH . G 4 HOH A 19 519 17 HOH HOH . G 4 HOH A 20 520 47 HOH HOH . G 4 HOH A 21 521 56 HOH HOH . G 4 HOH A 22 522 68 HOH HOH . G 4 HOH A 23 523 105 HOH HOH . G 4 HOH A 24 524 49 HOH HOH . G 4 HOH A 25 525 3 HOH HOH . G 4 HOH A 26 526 75 HOH HOH . G 4 HOH A 27 527 99 HOH HOH . G 4 HOH A 28 528 53 HOH HOH . G 4 HOH A 29 529 59 HOH HOH . G 4 HOH A 30 530 23 HOH HOH . G 4 HOH A 31 531 42 HOH HOH . G 4 HOH A 32 532 10 HOH HOH . G 4 HOH A 33 533 112 HOH HOH . G 4 HOH A 34 534 30 HOH HOH . G 4 HOH A 35 535 82 HOH HOH . G 4 HOH A 36 536 45 HOH HOH . G 4 HOH A 37 537 48 HOH HOH . G 4 HOH A 38 538 91 HOH HOH . G 4 HOH A 39 539 35 HOH HOH . G 4 HOH A 40 540 4 HOH HOH . G 4 HOH A 41 541 58 HOH HOH . G 4 HOH A 42 542 52 HOH HOH . G 4 HOH A 43 543 26 HOH HOH . G 4 HOH A 44 544 90 HOH HOH . G 4 HOH A 45 545 111 HOH HOH . G 4 HOH A 46 546 89 HOH HOH . G 4 HOH A 47 547 73 HOH HOH . G 4 HOH A 48 548 95 HOH HOH . H 4 HOH B 1 501 62 HOH HOH . H 4 HOH B 2 502 98 HOH HOH . H 4 HOH B 3 503 34 HOH HOH . H 4 HOH B 4 504 55 HOH HOH . H 4 HOH B 5 505 66 HOH HOH . H 4 HOH B 6 506 28 HOH HOH . H 4 HOH B 7 507 96 HOH HOH . H 4 HOH B 8 508 27 HOH HOH . H 4 HOH B 9 509 97 HOH HOH . H 4 HOH B 10 510 19 HOH HOH . H 4 HOH B 11 511 94 HOH HOH . H 4 HOH B 12 512 57 HOH HOH . H 4 HOH B 13 513 44 HOH HOH . H 4 HOH B 14 514 93 HOH HOH . H 4 HOH B 15 515 46 HOH HOH . H 4 HOH B 16 516 79 HOH HOH . H 4 HOH B 17 517 25 HOH HOH . H 4 HOH B 18 518 9 HOH HOH . H 4 HOH B 19 519 102 HOH HOH . H 4 HOH B 20 520 60 HOH HOH . H 4 HOH B 21 521 50 HOH HOH . H 4 HOH B 22 522 24 HOH HOH . H 4 HOH B 23 523 32 HOH HOH . H 4 HOH B 24 524 64 HOH HOH . H 4 HOH B 25 525 61 HOH HOH . H 4 HOH B 26 526 11 HOH HOH . H 4 HOH B 27 527 39 HOH HOH . H 4 HOH B 28 528 20 HOH HOH . H 4 HOH B 29 529 8 HOH HOH . H 4 HOH B 30 530 5 HOH HOH . H 4 HOH B 31 531 88 HOH HOH . H 4 HOH B 32 532 87 HOH HOH . H 4 HOH B 33 533 81 HOH HOH . H 4 HOH B 34 534 12 HOH HOH . H 4 HOH B 35 535 71 HOH HOH . H 4 HOH B 36 536 86 HOH HOH . H 4 HOH B 37 537 65 HOH HOH . H 4 HOH B 38 538 1 HOH HOH . H 4 HOH B 39 539 109 HOH HOH . H 4 HOH B 40 540 92 HOH HOH . H 4 HOH B 41 541 36 HOH HOH . H 4 HOH B 42 542 74 HOH HOH . H 4 HOH B 43 543 67 HOH HOH . H 4 HOH B 44 544 43 HOH HOH . H 4 HOH B 45 545 22 HOH HOH . H 4 HOH B 46 546 37 HOH HOH . H 4 HOH B 47 547 54 HOH HOH . H 4 HOH B 48 548 31 HOH HOH . H 4 HOH B 49 549 72 HOH HOH . H 4 HOH B 50 550 13 HOH HOH . H 4 HOH B 51 551 29 HOH HOH . H 4 HOH B 52 552 101 HOH HOH . H 4 HOH B 53 553 77 HOH HOH . H 4 HOH B 54 554 78 HOH HOH . H 4 HOH B 55 555 110 HOH HOH . H 4 HOH B 56 556 83 HOH HOH . H 4 HOH B 57 557 80 HOH HOH . H 4 HOH B 58 558 41 HOH HOH . H 4 HOH B 59 559 69 HOH HOH . H 4 HOH B 60 560 104 HOH HOH . H 4 HOH B 61 561 108 HOH HOH . H 4 HOH B 62 562 63 HOH HOH . H 4 HOH B 63 563 106 HOH HOH . H 4 HOH B 64 564 85 HOH HOH . H 4 HOH B 65 565 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 A1AFE . . . C 2 -1.802 1.309 17.942 0.97 37.34 ? C02 A1AFE 401 A 1 HETATM 2 C C04 A1AFE . . . C 2 -3.684 2.111 16.423 0.97 33.27 ? C04 A1AFE 401 A 1 HETATM 3 C C05 A1AFE . . . C 2 -3.625 2.618 15 0.97 34.59 ? C05 A1AFE 401 A 1 HETATM 4 C C06 A1AFE . . . C 2 -3.318 1.579 13.963 0.97 39.91 ? C06 A1AFE 401 A 1 HETATM 5 C C07 A1AFE . . . C 2 -2.151 0.733 14.399 0.97 40.36 ? C07 A1AFE 401 A 1 HETATM 6 C C08 A1AFE . . . C 2 -2.484 0.078 15.744 0.97 39.72 ? C08 A1AFE 401 A 1 HETATM 7 C C09 A1AFE . . . C 2 -4.011 1.474 12.848 0.97 38.96 ? C09 A1AFE 401 A 1 HETATM 8 C C10 A1AFE . . . C 2 -5.21 2.436 12.618 0.97 42.89 ? C10 A1AFE 401 A 1 HETATM 9 C C11 A1AFE . . . C 2 -4.963 3.746 12.142 0.97 38.49 ? C11 A1AFE 401 A 1 HETATM 10 C C12 A1AFE . . . C 2 -6.049 4.599 11.95 0.97 42.36 ? C12 A1AFE 401 A 1 HETATM 11 C C13 A1AFE . . . C 2 -7.354 4.17 12.22 0.97 41.1 ? C13 A1AFE 401 A 1 HETATM 12 C C14 A1AFE . . . C 2 -7.587 2.883 12.691 0.97 45.25 ? C14 A1AFE 401 A 1 HETATM 13 C C15 A1AFE . . . C 2 -6.488 2.012 12.891 0.97 44.02 ? C15 A1AFE 401 A 1 HETATM 14 C C16 A1AFE . . . C 2 -6.757 0.587 13.408 0.97 41.81 ? C16 A1AFE 401 A 1 HETATM 15 C C20 A1AFE . . . C 2 -4.579 -0.577 11.445 0.97 39.11 ? C20 A1AFE 401 A 1 HETATM 16 C C21 A1AFE . . . C 2 -4.265 -1.518 10.449 0.97 44.44 ? C21 A1AFE 401 A 1 HETATM 17 C C22 A1AFE . . . C 2 -3.039 -1.438 9.78 0.97 42.02 ? C22 A1AFE 401 A 1 HETATM 18 C C23 A1AFE . . . C 2 -2.133 -0.424 10.101 0.97 44.59 ? C23 A1AFE 401 A 1 HETATM 19 C C24 A1AFE . . . C 2 -2.445 0.507 11.081 0.97 44.76 ? C24 A1AFE 401 A 1 HETATM 20 C C25 A1AFE . . . C 2 -3.682 0.415 11.769 0.97 36.79 ? C25 A1AFE 401 A 1 HETATM 21 C C26 A1AFE . . . C 2 -0.729 0.27 18.271 0.97 38.35 ? C26 A1AFE 401 A 1 HETATM 22 C C27 A1AFE . . . C 2 -1.158 -0.9 18.953 0.97 43.28 ? C27 A1AFE 401 A 1 HETATM 23 C C29 A1AFE . . . C 2 -2.259 -2.514 19.989 0.97 39.23 ? C29 A1AFE 401 A 1 HETATM 24 C C30 A1AFE . . . C 2 -0.921 -2.878 19.925 0.97 46.31 ? C30 A1AFE 401 A 1 HETATM 25 C C31 A1AFE . . . C 2 -0.225 -1.846 19.265 0.97 44.31 ? C31 A1AFE 401 A 1 HETATM 26 C C32 A1AFE . . . C 2 1.12 -1.612 18.891 0.97 38.58 ? C32 A1AFE 401 A 1 HETATM 27 C C34 A1AFE . . . C 2 0.601 0.443 17.934 0.97 37.2 ? C34 A1AFE 401 A 1 HETATM 28 N N03 A1AFE . . . C 2 -2.625 1.151 16.749 0.97 36.55 ? N03 A1AFE 401 A 1 HETATM 29 N N28 A1AFE . . . C 2 -2.389 -1.32 19.4 0.97 36.59 ? N28 A1AFE 401 A 1 HETATM 30 N N33 A1AFE . . . C 2 1.469 -0.505 18.258 0.97 38.94 ? N33 A1AFE 401 A 1 HETATM 31 O O01 A1AFE . . . C 2 -2.002 2.222 18.662 0.97 42.95 ? O01 A1AFE 401 A 1 HETATM 32 O O18 A1AFE . . . C 2 -6.111 -1.954 13.074 0.97 56.19 ? O18 A1AFE 401 A 1 HETATM 33 O O19 A1AFE . . . C 2 -7.182 -0.839 11.219 0.97 52.9 ? O19 A1AFE 401 A 1 HETATM 34 S S17 A1AFE . . . C 2 -6.189 -0.721 12.289 0.97 50.19 ? S17 A1AFE 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #