data_8W1U # _model_server_result.job_id aEPjYAUj1ZpLWDc1a60xZQ _model_server_result.datetime_utc '2024-11-20 08:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8W1U # _exptl.entry_id 8W1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.53 _cell.angle_gamma 90 _cell.entry_id 8W1U _cell.length_a 45.956 _cell.length_b 54.066 _cell.length_c 112.877 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 145 n n S C1 DMS sing 146 n n S C2 DMS sing 147 n n C1 H11 DMS sing 148 n n C1 H12 DMS sing 149 n n C1 H13 DMS sing 150 n n C2 H21 DMS sing 151 n n C2 H22 DMS sing 152 n n C2 H23 DMS sing 153 n n # _atom_sites.entry_id 8W1U _atom_sites.fract_transf_matrix[1][1] 0.02176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AFE A 1 401 401 A1AFE Z0N . D 3 DMS A 1 402 402 DMS DMS . E 2 A1AFE B 1 401 401 A1AFE Z0N . F 3 DMS B 1 402 402 DMS DMS . G 4 HOH A 1 501 21 HOH HOH . G 4 HOH A 2 502 38 HOH HOH . G 4 HOH A 3 503 100 HOH HOH . G 4 HOH A 4 504 14 HOH HOH . G 4 HOH A 5 505 16 HOH HOH . G 4 HOH A 6 506 76 HOH HOH . G 4 HOH A 7 507 107 HOH HOH . G 4 HOH A 8 508 70 HOH HOH . G 4 HOH A 9 509 84 HOH HOH . G 4 HOH A 10 510 103 HOH HOH . G 4 HOH A 11 511 40 HOH HOH . G 4 HOH A 12 512 33 HOH HOH . G 4 HOH A 13 513 51 HOH HOH . G 4 HOH A 14 514 6 HOH HOH . G 4 HOH A 15 515 18 HOH HOH . G 4 HOH A 16 516 7 HOH HOH . G 4 HOH A 17 517 2 HOH HOH . G 4 HOH A 18 518 15 HOH HOH . G 4 HOH A 19 519 17 HOH HOH . G 4 HOH A 20 520 47 HOH HOH . G 4 HOH A 21 521 56 HOH HOH . G 4 HOH A 22 522 68 HOH HOH . G 4 HOH A 23 523 105 HOH HOH . G 4 HOH A 24 524 49 HOH HOH . G 4 HOH A 25 525 3 HOH HOH . G 4 HOH A 26 526 75 HOH HOH . G 4 HOH A 27 527 99 HOH HOH . G 4 HOH A 28 528 53 HOH HOH . G 4 HOH A 29 529 59 HOH HOH . G 4 HOH A 30 530 23 HOH HOH . G 4 HOH A 31 531 42 HOH HOH . G 4 HOH A 32 532 10 HOH HOH . G 4 HOH A 33 533 112 HOH HOH . G 4 HOH A 34 534 30 HOH HOH . G 4 HOH A 35 535 82 HOH HOH . G 4 HOH A 36 536 45 HOH HOH . G 4 HOH A 37 537 48 HOH HOH . G 4 HOH A 38 538 91 HOH HOH . G 4 HOH A 39 539 35 HOH HOH . G 4 HOH A 40 540 4 HOH HOH . G 4 HOH A 41 541 58 HOH HOH . G 4 HOH A 42 542 52 HOH HOH . G 4 HOH A 43 543 26 HOH HOH . G 4 HOH A 44 544 90 HOH HOH . G 4 HOH A 45 545 111 HOH HOH . G 4 HOH A 46 546 89 HOH HOH . G 4 HOH A 47 547 73 HOH HOH . G 4 HOH A 48 548 95 HOH HOH . H 4 HOH B 1 501 62 HOH HOH . H 4 HOH B 2 502 98 HOH HOH . H 4 HOH B 3 503 34 HOH HOH . H 4 HOH B 4 504 55 HOH HOH . H 4 HOH B 5 505 66 HOH HOH . H 4 HOH B 6 506 28 HOH HOH . H 4 HOH B 7 507 96 HOH HOH . H 4 HOH B 8 508 27 HOH HOH . H 4 HOH B 9 509 97 HOH HOH . H 4 HOH B 10 510 19 HOH HOH . H 4 HOH B 11 511 94 HOH HOH . H 4 HOH B 12 512 57 HOH HOH . H 4 HOH B 13 513 44 HOH HOH . H 4 HOH B 14 514 93 HOH HOH . H 4 HOH B 15 515 46 HOH HOH . H 4 HOH B 16 516 79 HOH HOH . H 4 HOH B 17 517 25 HOH HOH . H 4 HOH B 18 518 9 HOH HOH . H 4 HOH B 19 519 102 HOH HOH . H 4 HOH B 20 520 60 HOH HOH . H 4 HOH B 21 521 50 HOH HOH . H 4 HOH B 22 522 24 HOH HOH . H 4 HOH B 23 523 32 HOH HOH . H 4 HOH B 24 524 64 HOH HOH . H 4 HOH B 25 525 61 HOH HOH . H 4 HOH B 26 526 11 HOH HOH . H 4 HOH B 27 527 39 HOH HOH . H 4 HOH B 28 528 20 HOH HOH . H 4 HOH B 29 529 8 HOH HOH . H 4 HOH B 30 530 5 HOH HOH . H 4 HOH B 31 531 88 HOH HOH . H 4 HOH B 32 532 87 HOH HOH . H 4 HOH B 33 533 81 HOH HOH . H 4 HOH B 34 534 12 HOH HOH . H 4 HOH B 35 535 71 HOH HOH . H 4 HOH B 36 536 86 HOH HOH . H 4 HOH B 37 537 65 HOH HOH . H 4 HOH B 38 538 1 HOH HOH . H 4 HOH B 39 539 109 HOH HOH . H 4 HOH B 40 540 92 HOH HOH . H 4 HOH B 41 541 36 HOH HOH . H 4 HOH B 42 542 74 HOH HOH . H 4 HOH B 43 543 67 HOH HOH . H 4 HOH B 44 544 43 HOH HOH . H 4 HOH B 45 545 22 HOH HOH . H 4 HOH B 46 546 37 HOH HOH . H 4 HOH B 47 547 54 HOH HOH . H 4 HOH B 48 548 31 HOH HOH . H 4 HOH B 49 549 72 HOH HOH . H 4 HOH B 50 550 13 HOH HOH . H 4 HOH B 51 551 29 HOH HOH . H 4 HOH B 52 552 101 HOH HOH . H 4 HOH B 53 553 77 HOH HOH . H 4 HOH B 54 554 78 HOH HOH . H 4 HOH B 55 555 110 HOH HOH . H 4 HOH B 56 556 83 HOH HOH . H 4 HOH B 57 557 80 HOH HOH . H 4 HOH B 58 558 41 HOH HOH . H 4 HOH B 59 559 69 HOH HOH . H 4 HOH B 60 560 104 HOH HOH . H 4 HOH B 61 561 108 HOH HOH . H 4 HOH B 62 562 63 HOH HOH . H 4 HOH B 63 563 106 HOH HOH . H 4 HOH B 64 564 85 HOH HOH . H 4 HOH B 65 565 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 19.699 -8.327 28.743 1 104.38 ? S DMS 402 A 1 HETATM 2 O O DMS . . . D 3 19.599 -6.837 28.806 1 61.85 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . D 3 20.741 -8.93 30.099 1 65.52 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . D 3 20.748 -8.802 27.342 1 73.83 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #