data_8W26 # _model_server_result.job_id TbsVogH9v4BoyHKRk1lHzg _model_server_result.datetime_utc '2024-10-11 02:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 8W26 # _exptl.entry_id 8W26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W26 _cell.length_a 102.846 _cell.length_b 102.846 _cell.length_c 130.516 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 138 A CYS 138 1_555 B CAC CYC . A CYC 501 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.767 ? covale ? covale2 A SG CYS 138 A CYS 138 1_555 B CAC CYC . A CYC 501 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.767 ? covale ? covale3 A C SER 145 A SER 145 1_555 A N MSE 146 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 146 A MSE 146 1_555 A N GLY 147 A GLY 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 156 A LEU 156 1_555 A N MSE 157 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 157 A MSE 157 1_555 A N HIS 158 A HIS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C PHE 253 A PHE 253 1_555 A N MSE 254 A MSE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 254 A MSE 254 1_555 A N GLY 255 A GLY 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C LYS 289 A LYS 289 1_555 A N MSE 290 A MSE 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 290 A MSE 290 1_555 A N TRP 291 A TRP 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C GLN 305 A GLN 305 1_555 A N MSE 306 A MSE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 306 A MSE 306 1_555 A N LYS 307 A LYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C LEU 383 A LEU 383 1_555 A N MSE 384 A MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 A C MSE 384 A MSE 384 1_555 A N SER 385 A SER 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 175 n n C1 C2 EDO sing 176 n n C1 H11 EDO sing 177 n n C1 H12 EDO sing 178 n n O1 HO1 EDO sing 179 n n C2 O2 EDO sing 180 n n C2 H21 EDO sing 181 n n C2 H22 EDO sing 182 n n O2 HO2 EDO sing 183 n n # _atom_sites.entry_id 8W26 _atom_sites.fract_transf_matrix[1][1] 0.009723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYC A 1 501 800 CYC CYC . C 3 EDO A 1 502 802 EDO EDO . D 3 EDO A 1 503 803 EDO EDO . E 3 EDO A 1 504 804 EDO EDO . F 3 EDO A 1 505 805 EDO EDO . G 3 EDO A 1 506 806 EDO EDO . H 3 EDO A 1 507 807 EDO EDO . I 4 ACT A 1 508 808 ACT ACT . J 5 HOH A 1 601 118 HOH HOH . J 5 HOH A 2 602 193 HOH HOH . J 5 HOH A 3 603 7 HOH HOH . J 5 HOH A 4 604 36 HOH HOH . J 5 HOH A 5 605 1252 HOH HOH . J 5 HOH A 6 606 452 HOH HOH . J 5 HOH A 7 607 133 HOH HOH . J 5 HOH A 8 608 60 HOH HOH . J 5 HOH A 9 609 308 HOH HOH . J 5 HOH A 10 610 59 HOH HOH . J 5 HOH A 11 611 484 HOH HOH . J 5 HOH A 12 612 813 HOH HOH . J 5 HOH A 13 613 1524 HOH HOH . J 5 HOH A 14 614 22 HOH HOH . J 5 HOH A 15 615 1552 HOH HOH . J 5 HOH A 16 616 100 HOH HOH . J 5 HOH A 17 617 104 HOH HOH . J 5 HOH A 18 618 116 HOH HOH . J 5 HOH A 19 619 45 HOH HOH . J 5 HOH A 20 620 150 HOH HOH . J 5 HOH A 21 621 356 HOH HOH . J 5 HOH A 22 622 5 HOH HOH . J 5 HOH A 23 623 142 HOH HOH . J 5 HOH A 24 624 27 HOH HOH . J 5 HOH A 25 625 26 HOH HOH . J 5 HOH A 26 626 122 HOH HOH . J 5 HOH A 27 627 147 HOH HOH . J 5 HOH A 28 628 103 HOH HOH . J 5 HOH A 29 629 1189 HOH HOH . J 5 HOH A 30 630 140 HOH HOH . J 5 HOH A 31 631 209 HOH HOH . J 5 HOH A 32 632 88 HOH HOH . J 5 HOH A 33 633 3 HOH HOH . J 5 HOH A 34 634 120 HOH HOH . J 5 HOH A 35 635 171 HOH HOH . J 5 HOH A 36 636 1080 HOH HOH . J 5 HOH A 37 637 331 HOH HOH . J 5 HOH A 38 638 17 HOH HOH . J 5 HOH A 39 639 149 HOH HOH . J 5 HOH A 40 640 63 HOH HOH . J 5 HOH A 41 641 16 HOH HOH . J 5 HOH A 42 642 38 HOH HOH . J 5 HOH A 43 643 73 HOH HOH . J 5 HOH A 44 644 97 HOH HOH . J 5 HOH A 45 645 32 HOH HOH . J 5 HOH A 46 646 92 HOH HOH . J 5 HOH A 47 647 204 HOH HOH . J 5 HOH A 48 648 71 HOH HOH . J 5 HOH A 49 649 9 HOH HOH . J 5 HOH A 50 650 94 HOH HOH . J 5 HOH A 51 651 266 HOH HOH . J 5 HOH A 52 652 534 HOH HOH . J 5 HOH A 53 653 30 HOH HOH . J 5 HOH A 54 654 627 HOH HOH . J 5 HOH A 55 655 164 HOH HOH . J 5 HOH A 56 656 134 HOH HOH . J 5 HOH A 57 657 57 HOH HOH . J 5 HOH A 58 658 35 HOH HOH . J 5 HOH A 59 659 58 HOH HOH . J 5 HOH A 60 660 572 HOH HOH . J 5 HOH A 61 661 136 HOH HOH . J 5 HOH A 62 662 1063 HOH HOH . J 5 HOH A 63 663 131 HOH HOH . J 5 HOH A 64 664 84 HOH HOH . J 5 HOH A 65 665 159 HOH HOH . J 5 HOH A 66 666 54 HOH HOH . J 5 HOH A 67 667 61 HOH HOH . J 5 HOH A 68 668 108 HOH HOH . J 5 HOH A 69 669 740 HOH HOH . J 5 HOH A 70 670 1471 HOH HOH . J 5 HOH A 71 671 105 HOH HOH . J 5 HOH A 72 672 67 HOH HOH . J 5 HOH A 73 673 18 HOH HOH . J 5 HOH A 74 674 40 HOH HOH . J 5 HOH A 75 675 11 HOH HOH . J 5 HOH A 76 676 2 HOH HOH . J 5 HOH A 77 677 112 HOH HOH . J 5 HOH A 78 678 101 HOH HOH . J 5 HOH A 79 679 127 HOH HOH . J 5 HOH A 80 680 42 HOH HOH . J 5 HOH A 81 681 98 HOH HOH . J 5 HOH A 82 682 72 HOH HOH . J 5 HOH A 83 683 62 HOH HOH . J 5 HOH A 84 684 162 HOH HOH . J 5 HOH A 85 685 83 HOH HOH . J 5 HOH A 86 686 941 HOH HOH . J 5 HOH A 87 687 451 HOH HOH . J 5 HOH A 88 688 79 HOH HOH . J 5 HOH A 89 689 76 HOH HOH . J 5 HOH A 90 690 279 HOH HOH . J 5 HOH A 91 691 21 HOH HOH . J 5 HOH A 92 692 86 HOH HOH . J 5 HOH A 93 693 181 HOH HOH . J 5 HOH A 94 694 947 HOH HOH . J 5 HOH A 95 695 1544 HOH HOH . J 5 HOH A 96 696 172 HOH HOH . J 5 HOH A 97 697 64 HOH HOH . J 5 HOH A 98 698 186 HOH HOH . J 5 HOH A 99 699 153 HOH HOH . J 5 HOH A 100 700 155 HOH HOH . J 5 HOH A 101 701 1026 HOH HOH . J 5 HOH A 102 702 151 HOH HOH . J 5 HOH A 103 703 99 HOH HOH . J 5 HOH A 104 704 692 HOH HOH . J 5 HOH A 105 705 130 HOH HOH . J 5 HOH A 106 706 48 HOH HOH . J 5 HOH A 107 707 177 HOH HOH . J 5 HOH A 108 708 41 HOH HOH . J 5 HOH A 109 709 198 HOH HOH . J 5 HOH A 110 710 110 HOH HOH . J 5 HOH A 111 711 50 HOH HOH . J 5 HOH A 112 712 96 HOH HOH . J 5 HOH A 113 713 450 HOH HOH . J 5 HOH A 114 714 1498 HOH HOH . J 5 HOH A 115 715 10 HOH HOH . J 5 HOH A 116 716 77 HOH HOH . J 5 HOH A 117 717 930 HOH HOH . J 5 HOH A 118 718 316 HOH HOH . J 5 HOH A 119 719 4 HOH HOH . J 5 HOH A 120 720 156 HOH HOH . J 5 HOH A 121 721 226 HOH HOH . J 5 HOH A 122 722 269 HOH HOH . J 5 HOH A 123 723 951 HOH HOH . J 5 HOH A 124 724 244 HOH HOH . J 5 HOH A 125 725 415 HOH HOH . J 5 HOH A 126 726 1300 HOH HOH . J 5 HOH A 127 727 146 HOH HOH . J 5 HOH A 128 728 262 HOH HOH . J 5 HOH A 129 729 80 HOH HOH . J 5 HOH A 130 730 237 HOH HOH . J 5 HOH A 131 731 796 HOH HOH . J 5 HOH A 132 732 152 HOH HOH . J 5 HOH A 133 733 197 HOH HOH . J 5 HOH A 134 734 1453 HOH HOH . J 5 HOH A 135 735 44 HOH HOH . J 5 HOH A 136 736 448 HOH HOH . J 5 HOH A 137 737 49 HOH HOH . J 5 HOH A 138 738 78 HOH HOH . J 5 HOH A 139 739 154 HOH HOH . J 5 HOH A 140 740 1296 HOH HOH . J 5 HOH A 141 741 107 HOH HOH . J 5 HOH A 142 742 95 HOH HOH . J 5 HOH A 143 743 75 HOH HOH . J 5 HOH A 144 744 68 HOH HOH . J 5 HOH A 145 745 223 HOH HOH . J 5 HOH A 146 746 129 HOH HOH . J 5 HOH A 147 747 111 HOH HOH . J 5 HOH A 148 748 982 HOH HOH . J 5 HOH A 149 749 182 HOH HOH . J 5 HOH A 150 750 87 HOH HOH . J 5 HOH A 151 751 458 HOH HOH . J 5 HOH A 152 752 301 HOH HOH . J 5 HOH A 153 753 1258 HOH HOH . J 5 HOH A 154 754 298 HOH HOH . J 5 HOH A 155 755 1245 HOH HOH . J 5 HOH A 156 756 561 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -22.418 -18.546 -13.057 1 92.22 ? C1 EDO 504 A 1 HETATM 2 O O1 EDO . . . E 3 -21.029 -18.372 -13.228 1 116.53 ? O1 EDO 504 A 1 HETATM 3 C C2 EDO . . . E 3 -22.738 -20.017 -12.939 1 83.41 ? C2 EDO 504 A 1 HETATM 4 O O2 EDO . . . E 3 -24.136 -20.202 -12.876 1 81.27 ? O2 EDO 504 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #