data_8W2H # _model_server_result.job_id Xhz9D_krM7Gr-vgUeEhfUg _model_server_result.datetime_utc '2024-10-12 07:25:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":801}' # _entry.id 8W2H # _exptl.entry_id 8W2H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W2H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 O N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 119 A ASP 119 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 G O2G ATP . A ATP 803 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 G O2B ATP . A ATP 803 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc4 B OD1 ASP 119 B ASP 119 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 L O2G ATP . B ATP 803 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 L O2B ATP . B ATP 803 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc7 C OD1 ASP 119 C ASP 119 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc8 Q O2G ATP . C ATP 803 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 Q O2B ATP . C ATP 803 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc10 D OD1 ASP 119 D ASP 119 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc11 V O2G ATP . D ATP 803 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 V O2B ATP . D ATP 803 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 132 n n P1 O2P FBP sing 133 n n P1 O3P FBP sing 134 n n P1 O1 FBP sing 135 n n O2P HOP2 FBP sing 136 n n O3P HOP3 FBP sing 137 n n O1 C1 FBP sing 138 n n C1 C2 FBP sing 139 n n C1 H11 FBP sing 140 n n C1 H12 FBP sing 141 n n C2 O2 FBP sing 142 n n C2 C3 FBP sing 143 n n C2 O5 FBP sing 144 n n O2 HO2 FBP sing 145 n n C3 O3 FBP sing 146 n n C3 C4 FBP sing 147 n n C3 H3 FBP sing 148 n n O3 HO3 FBP sing 149 n n C4 O4 FBP sing 150 n n C4 C5 FBP sing 151 n n C4 H4 FBP sing 152 n n O4 HO4 FBP sing 153 n n C5 O5 FBP sing 154 n n C5 C6 FBP sing 155 n n C5 H5 FBP sing 156 n n C6 O6 FBP sing 157 n n C6 H61 FBP sing 158 n n C6 H62 FBP sing 159 n n O6 P2 FBP sing 160 n n P2 O4P FBP doub 161 n n P2 O5P FBP sing 162 n n P2 O6P FBP sing 163 n n O5P HOP5 FBP sing 164 n n O6P HOP6 FBP sing 165 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8W2H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 801 802 FBP FBP . F 3 ATP A 1 802 602 ATP ATP . G 3 ATP A 1 803 763 ATP ATP . H 3 ATP A 1 804 765 ATP ATP . I 4 MG A 1 805 1 MG MG . J 2 FBP B 1 801 802 FBP FBP . K 3 ATP B 1 802 602 ATP ATP . L 3 ATP B 1 803 763 ATP ATP . M 3 ATP B 1 804 765 ATP ATP . N 4 MG B 1 805 1 MG MG . O 2 FBP C 1 801 802 FBP FBP . P 3 ATP C 1 802 602 ATP ATP . Q 3 ATP C 1 803 763 ATP ATP . R 3 ATP C 1 804 765 ATP ATP . S 4 MG C 1 805 1 MG MG . T 2 FBP D 1 801 802 FBP FBP . U 3 ATP D 1 802 602 ATP ATP . V 3 ATP D 1 803 763 ATP ATP . W 3 ATP D 1 804 765 ATP ATP . X 4 MG D 1 805 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . O 2 223.892 223.685 213.621 1 23.85 ? P1 FBP 801 C 1 HETATM 2 O O1P FBP . . . O 2 222.441 223.698 213.464 1 23.85 ? O1P FBP 801 C 1 HETATM 3 O O2P FBP . . . O 2 224.125 224.322 214.913 1 23.85 ? O2P FBP 801 C 1 HETATM 4 O O3P FBP . . . O 2 224.214 222.279 213.85 1 23.85 ? O3P FBP 801 C 1 HETATM 5 O O1 FBP . . . O 2 224.713 224.372 212.37 1 23.85 ? O1 FBP 801 C 1 HETATM 6 C C1 FBP . . . O 2 224.67 223.717 211.137 1 23.85 ? C1 FBP 801 C 1 HETATM 7 C C2 FBP . . . O 2 225.13 224.654 210.013 1 23.85 ? C2 FBP 801 C 1 HETATM 8 O O2 FBP . . . O 2 224.038 225.262 209.453 1 23.85 ? O2 FBP 801 C 1 HETATM 9 C C3 FBP . . . O 2 225.873 223.896 208.966 1 23.85 ? C3 FBP 801 C 1 HETATM 10 O O3 FBP . . . O 2 225.659 224.497 207.684 1 23.85 ? O3 FBP 801 C 1 HETATM 11 C C4 FBP . . . O 2 227.291 223.995 209.374 1 23.85 ? C4 FBP 801 C 1 HETATM 12 O O4 FBP . . . O 2 227.638 222.977 210.32 1 23.85 ? O4 FBP 801 C 1 HETATM 13 C C5 FBP . . . O 2 227.415 225.33 210.03 1 23.85 ? C5 FBP 801 C 1 HETATM 14 O O5 FBP . . . O 2 226.069 225.67 210.507 1 23.85 ? O5 FBP 801 C 1 HETATM 15 C C6 FBP . . . O 2 227.934 226.311 209.025 1 23.85 ? C6 FBP 801 C 1 HETATM 16 O O6 FBP . . . O 2 227.773 227.619 209.492 1 23.85 ? O6 FBP 801 C 1 HETATM 17 P P2 FBP . . . O 2 227.054 228.763 208.544 1 23.85 ? P2 FBP 801 C 1 HETATM 18 O O4P FBP . . . O 2 226.535 228.321 207.251 1 23.85 ? O4P FBP 801 C 1 HETATM 19 O O5P FBP . . . O 2 225.89 229.38 209.169 1 23.85 ? O5P FBP 801 C 1 HETATM 20 O O6P FBP . . . O 2 227.919 229.888 208.206 1 23.85 ? O6P FBP 801 C 1 HETATM 21 H H11 FBP . . . O 2 223.654 223.39 210.941 1 23.85 ? H11 FBP 801 C 1 HETATM 22 H H12 FBP . . . O 2 225.302 222.839 211.205 1 23.85 ? H12 FBP 801 C 1 HETATM 23 H HO2 FBP . . . O 2 224.286 225.656 208.632 1 23.85 ? HO2 FBP 801 C 1 HETATM 24 H H3 FBP . . . O 2 225.538 222.873 208.922 1 23.85 ? H3 FBP 801 C 1 HETATM 25 H HO3 FBP . . . O 2 225.028 223.99 207.199 1 23.85 ? HO3 FBP 801 C 1 HETATM 26 H H4 FBP . . . O 2 227.938 223.936 208.508 1 23.85 ? H4 FBP 801 C 1 HETATM 27 H HO4 FBP . . . O 2 227.435 223.259 211.197 1 23.85 ? HO4 FBP 801 C 1 HETATM 28 H H5 FBP . . . O 2 228.099 225.28 210.868 1 23.85 ? H5 FBP 801 C 1 HETATM 29 H H61 FBP . . . O 2 228.988 226.118 208.859 1 23.85 ? H61 FBP 801 C 1 HETATM 30 H H62 FBP . . . O 2 227.413 226.184 208.09 1 23.85 ? H62 FBP 801 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #