data_8W2H # _model_server_result.job_id LrdSGLXI9izfm1aK0FPp4g _model_server_result.datetime_utc '2024-10-12 07:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 8W2H # _exptl.entry_id 8W2H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W2H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 U N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 119 A ASP 119 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 G O2G ATP . A ATP 803 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 G O2B ATP . A ATP 803 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc4 B OD1 ASP 119 B ASP 119 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 L O2G ATP . B ATP 803 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 L O2B ATP . B ATP 803 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc7 C OD1 ASP 119 C ASP 119 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc8 Q O2G ATP . C ATP 803 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 Q O2B ATP . C ATP 803 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc10 D OD1 ASP 119 D ASP 119 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc11 V O2G ATP . D ATP 803 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 V O2B ATP . D ATP 803 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8W2H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 801 802 FBP FBP . F 3 ATP A 1 802 602 ATP ATP . G 3 ATP A 1 803 763 ATP ATP . H 3 ATP A 1 804 765 ATP ATP . I 4 MG A 1 805 1 MG MG . J 2 FBP B 1 801 802 FBP FBP . K 3 ATP B 1 802 602 ATP ATP . L 3 ATP B 1 803 763 ATP ATP . M 3 ATP B 1 804 765 ATP ATP . N 4 MG B 1 805 1 MG MG . O 2 FBP C 1 801 802 FBP FBP . P 3 ATP C 1 802 602 ATP ATP . Q 3 ATP C 1 803 763 ATP ATP . R 3 ATP C 1 804 765 ATP ATP . S 4 MG C 1 805 1 MG MG . T 2 FBP D 1 801 802 FBP FBP . U 3 ATP D 1 802 602 ATP ATP . V 3 ATP D 1 803 763 ATP ATP . W 3 ATP D 1 804 765 ATP ATP . X 4 MG D 1 805 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 3 159.763 215.263 229.222 1 37.1 ? PG ATP 803 A 1 HETATM 2 O O1G ATP . . . G 3 159.016 214.176 228.594 1 37.1 ? O1G ATP 803 A 1 HETATM 3 O O2G ATP . . . G 3 158.929 216.443 229.015 1 37.1 ? O2G ATP 803 A 1 HETATM 4 O O3G ATP . . . G 3 160.913 215.471 228.348 1 37.1 ? O3G ATP 803 A 1 HETATM 5 P PB ATP . . . G 3 159.134 215.289 232.051 1 37.1 ? PB ATP 803 A 1 HETATM 6 O O1B ATP . . . G 3 159.849 215.338 233.323 1 37.1 ? O1B ATP 803 A 1 HETATM 7 O O2B ATP . . . G 3 158.588 216.641 231.976 1 37.1 ? O2B ATP 803 A 1 HETATM 8 O O3B ATP . . . G 3 160.158 214.992 230.797 1 37.1 ? O3B ATP 803 A 1 HETATM 9 P PA ATP . . . G 3 156.674 214.2 233.141 1 37.1 ? PA ATP 803 A 1 HETATM 10 O O1A ATP . . . G 3 155.669 213.196 232.806 1 37.1 ? O1A ATP 803 A 1 HETATM 11 O O2A ATP . . . G 3 155.902 215.432 233.005 1 37.1 ? O2A ATP 803 A 1 HETATM 12 O O3A ATP . . . G 3 157.934 214.16 232.081 1 37.1 ? O3A ATP 803 A 1 HETATM 13 O O5' ATP . . . G 3 157.219 214.001 234.685 1 37.1 ? O5' ATP 803 A 1 HETATM 14 C C5' ATP . . . G 3 157.872 212.808 235.011 1 37.1 ? C5' ATP 803 A 1 HETATM 15 C C4' ATP . . . G 3 157.512 212.413 236.4 1 37.1 ? C4' ATP 803 A 1 HETATM 16 O O4' ATP . . . G 3 157.614 213.586 237.32 1 37.1 ? O4' ATP 803 A 1 HETATM 17 C C3' ATP . . . G 3 156.101 211.957 236.451 1 37.1 ? C3' ATP 803 A 1 HETATM 18 O O3' ATP . . . G 3 156.023 210.521 236.292 1 37.1 ? O3' ATP 803 A 1 HETATM 19 C C2' ATP . . . G 3 155.603 212.321 237.77 1 37.1 ? C2' ATP 803 A 1 HETATM 20 O O2' ATP . . . G 3 155.741 211.195 238.673 1 37.1 ? O2' ATP 803 A 1 HETATM 21 C C1' ATP . . . G 3 156.438 213.452 238.244 1 37.1 ? C1' ATP 803 A 1 HETATM 22 N N9 ATP . . . G 3 155.661 214.634 238.235 1 37.1 ? N9 ATP 803 A 1 HETATM 23 C C8 ATP . . . G 3 155.336 215.312 237.077 1 37.1 ? C8 ATP 803 A 1 HETATM 24 N N7 ATP . . . G 3 154.613 216.327 237.567 1 37.1 ? N7 ATP 803 A 1 HETATM 25 C C5 ATP . . . G 3 154.432 216.369 238.95 1 37.1 ? C5 ATP 803 A 1 HETATM 26 C C6 ATP . . . G 3 153.841 217.09 239.986 1 37.1 ? C6 ATP 803 A 1 HETATM 27 N N6 ATP . . . G 3 153.075 218.295 239.727 1 37.1 ? N6 ATP 803 A 1 HETATM 28 N N1 ATP . . . G 3 154.008 216.634 241.197 1 37.1 ? N1 ATP 803 A 1 HETATM 29 C C2 ATP . . . G 3 154.673 215.568 241.52 1 37.1 ? C2 ATP 803 A 1 HETATM 30 N N3 ATP . . . G 3 155.287 214.787 240.666 1 37.1 ? N3 ATP 803 A 1 HETATM 31 C C4 ATP . . . G 3 155.154 215.201 239.401 1 37.1 ? C4 ATP 803 A 1 HETATM 32 H "H5'1" ATP . . . G 3 158.944 212.943 234.93 1 37.1 ? "H5'1" ATP 803 A 1 HETATM 33 H "H5'2" ATP . . . G 3 157.558 212.029 234.324 1 37.1 ? "H5'2" ATP 803 A 1 HETATM 34 H H4' ATP . . . G 3 158.166 211.62 236.744 1 37.1 ? H4' ATP 803 A 1 HETATM 35 H H3' ATP . . . G 3 155.522 212.456 235.684 1 37.1 ? H3' ATP 803 A 1 HETATM 36 H HO3' ATP . . . G 3 155.149 210.281 236.028 1 37.1 ? HO3' ATP 803 A 1 HETATM 37 H H2' ATP . . . G 3 154.566 212.627 237.703 1 37.1 ? H2' ATP 803 A 1 HETATM 38 H HO2' ATP . . . G 3 154.94 211.08 239.159 1 37.1 ? HO2' ATP 803 A 1 HETATM 39 H H1' ATP . . . G 3 156.789 213.248 239.247 1 37.1 ? H1' ATP 803 A 1 HETATM 40 H H8 ATP . . . G 3 155.599 215.089 236.05 1 37.1 ? H8 ATP 803 A 1 HETATM 41 H HN61 ATP . . . G 3 153.067 218.696 238.808 1 37.1 ? HN61 ATP 803 A 1 HETATM 42 H HN62 ATP . . . G 3 152.555 218.727 240.468 1 37.1 ? HN62 ATP 803 A 1 HETATM 43 H H2 ATP . . . G 3 154.731 215.309 242.57 1 37.1 ? H2 ATP 803 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #