data_8W2H # _model_server_result.job_id IWUD_tPzJIQJP8jiKHE3Eg _model_server_result.datetime_utc '2024-10-12 07:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":804}' # _entry.id 8W2H # _exptl.entry_id 8W2H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W2H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 U N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 119 A ASP 119 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 G O2G ATP . A ATP 803 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 G O2B ATP . A ATP 803 1_555 I MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc4 B OD1 ASP 119 B ASP 119 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 L O2G ATP . B ATP 803 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 L O2B ATP . B ATP 803 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc7 C OD1 ASP 119 C ASP 119 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc8 Q O2G ATP . C ATP 803 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 Q O2B ATP . C ATP 803 1_555 S MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc10 D OD1 ASP 119 D ASP 119 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc11 V O2G ATP . D ATP 803 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 V O2B ATP . D ATP 803 1_555 X MG MG . D MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8W2H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 801 802 FBP FBP . F 3 ATP A 1 802 602 ATP ATP . G 3 ATP A 1 803 763 ATP ATP . H 3 ATP A 1 804 765 ATP ATP . I 4 MG A 1 805 1 MG MG . J 2 FBP B 1 801 802 FBP FBP . K 3 ATP B 1 802 602 ATP ATP . L 3 ATP B 1 803 763 ATP ATP . M 3 ATP B 1 804 765 ATP ATP . N 4 MG B 1 805 1 MG MG . O 2 FBP C 1 801 802 FBP FBP . P 3 ATP C 1 802 602 ATP ATP . Q 3 ATP C 1 803 763 ATP ATP . R 3 ATP C 1 804 765 ATP ATP . S 4 MG C 1 805 1 MG MG . T 2 FBP D 1 801 802 FBP FBP . U 3 ATP D 1 802 602 ATP ATP . V 3 ATP D 1 803 763 ATP ATP . W 3 ATP D 1 804 765 ATP ATP . X 4 MG D 1 805 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . W 3 265.519 179.507 210.937 1 37.21 ? PG ATP 804 D 1 HETATM 2 O O1G ATP . . . W 3 264.7 178.421 210.405 1 37.21 ? O1G ATP 804 D 1 HETATM 3 O O2G ATP . . . W 3 264.592 180.628 211.06 1 37.21 ? O2G ATP 804 D 1 HETATM 4 O O3G ATP . . . W 3 265.794 179.112 212.315 1 37.21 ? O3G ATP 804 D 1 HETATM 5 P PB ATP . . . W 3 267.473 178.876 208.863 1 37.21 ? PB ATP 804 D 1 HETATM 6 O O1B ATP . . . W 3 268.666 178.166 209.315 1 37.21 ? O1B ATP 804 D 1 HETATM 7 O O2B ATP . . . W 3 266.577 177.763 208.565 1 37.21 ? O2B ATP 804 D 1 HETATM 8 O O3B ATP . . . W 3 266.868 179.846 210.051 1 37.21 ? O3B ATP 804 D 1 HETATM 9 P PA ATP . . . W 3 266.835 181.03 207.034 1 37.21 ? PA ATP 804 D 1 HETATM 10 O O1A ATP . . . W 3 266.511 180.942 205.613 1 37.21 ? O1A ATP 804 D 1 HETATM 11 O O2A ATP . . . W 3 265.512 180.946 207.642 1 37.21 ? O2A ATP 804 D 1 HETATM 12 O O3A ATP . . . W 3 267.778 179.764 207.509 1 37.21 ? O3A ATP 804 D 1 HETATM 13 O O5' ATP . . . W 3 267.514 182.485 207.41 1 37.21 ? O5' ATP 804 D 1 HETATM 14 C C5' ATP . . . W 3 268.799 182.556 207.961 1 37.21 ? C5' ATP 804 D 1 HETATM 15 C C4' ATP . . . W 3 268.864 183.742 208.858 1 37.21 ? C4' ATP 804 D 1 HETATM 16 O O4' ATP . . . W 3 268.154 184.889 208.214 1 37.21 ? O4' ATP 804 D 1 HETATM 17 C C3' ATP . . . W 3 268.189 183.456 210.155 1 37.21 ? C3' ATP 804 D 1 HETATM 18 O O3' ATP . . . W 3 269.051 183.864 211.246 1 37.21 ? O3' ATP 804 D 1 HETATM 19 C C2' ATP . . . W 3 266.958 184.235 210.186 1 37.21 ? C2' ATP 804 D 1 HETATM 20 O O2' ATP . . . W 3 266.725 184.749 211.522 1 37.21 ? O2' ATP 804 D 1 HETATM 21 C C1' ATP . . . W 3 267.168 185.358 209.24 1 37.21 ? C1' ATP 804 D 1 HETATM 22 N N9 ATP . . . W 3 265.964 185.747 208.606 1 37.21 ? N9 ATP 804 D 1 HETATM 23 C C8 ATP . . . W 3 265.299 184.96 207.689 1 37.21 ? C8 ATP 804 D 1 HETATM 24 N N7 ATP . . . W 3 264.259 185.746 207.391 1 37.21 ? N7 ATP 804 D 1 HETATM 25 C C5 ATP . . . W 3 264.187 186.988 208.015 1 37.21 ? C5 ATP 804 D 1 HETATM 26 C C6 ATP . . . W 3 263.433 188.155 208.12 1 37.21 ? C6 ATP 804 D 1 HETATM 27 N N6 ATP . . . W 3 262.216 188.352 207.355 1 37.21 ? N6 ATP 804 D 1 HETATM 28 N N1 ATP . . . W 3 263.875 189.067 208.938 1 37.21 ? N1 ATP 804 D 1 HETATM 29 C C2 ATP . . . W 3 264.949 188.975 209.654 1 37.21 ? C2 ATP 804 D 1 HETATM 30 N N3 ATP . . . W 3 265.762 187.952 209.671 1 37.21 ? N3 ATP 804 D 1 HETATM 31 C C4 ATP . . . W 3 265.365 186.978 208.851 1 37.21 ? C4 ATP 804 D 1 HETATM 32 H "H5'1" ATP . . . W 3 269.527 182.651 207.164 1 37.21 ? "H5'1" ATP 804 D 1 HETATM 33 H "H5'2" ATP . . . W 3 269.018 181.662 208.532 1 37.21 ? "H5'2" ATP 804 D 1 HETATM 34 H H4' ATP . . . W 3 269.898 184.012 209.036 1 37.21 ? H4' ATP 804 D 1 HETATM 35 H H3' ATP . . . W 3 267.951 182.404 210.243 1 37.21 ? H3' ATP 804 D 1 HETATM 36 H HO3' ATP . . . W 3 268.524 184.088 211.996 1 37.21 ? HO3' ATP 804 D 1 HETATM 37 H H2' ATP . . . W 3 266.125 183.619 209.871 1 37.21 ? H2' ATP 804 D 1 HETATM 38 H HO2' ATP . . . W 3 266.248 185.561 211.467 1 37.21 ? HO2' ATP 804 D 1 HETATM 39 H H1' ATP . . . W 3 267.588 186.2 209.776 1 37.21 ? H1' ATP 804 D 1 HETATM 40 H H8 ATP . . . W 3 265.542 183.971 207.321 1 37.21 ? H8 ATP 804 D 1 HETATM 41 H HN61 ATP . . . W 3 261.858 189.28 207.216 1 37.21 ? HN61 ATP 804 D 1 HETATM 42 H HN62 ATP . . . W 3 261.737 187.565 206.96 1 37.21 ? HN62 ATP 804 D 1 HETATM 43 H H2 ATP . . . W 3 265.197 189.804 210.289 1 37.21 ? H2 ATP 804 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #