data_8W2K # _model_server_result.job_id fIxmhq_xDTaewIg46xqQmQ _model_server_result.datetime_utc '2024-11-15 04:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8W2K # _exptl.entry_id 8W2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W2K _cell.length_a 144.081 _cell.length_b 154.84 _cell.length_c 88.757 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 181 n n CHA C4D HEM doub 182 n n CHA HHA HEM sing 183 n n CHB C4A HEM sing 184 n n CHB C1B HEM doub 185 n n CHB HHB HEM sing 186 n n CHC C4B HEM sing 187 n n CHC C1C HEM doub 188 n n CHC HHC HEM sing 189 n n CHD C4C HEM doub 190 n n CHD C1D HEM sing 191 n n CHD HHD HEM sing 192 n n C1A C2A HEM doub 193 n y C1A NA HEM sing 194 n y C2A C3A HEM sing 195 n y C2A CAA HEM sing 196 n n C3A C4A HEM doub 197 n y C3A CMA HEM sing 198 n n C4A NA HEM sing 199 n y CMA HMA HEM sing 200 n n CMA HMAA HEM sing 201 n n CMA HMAB HEM sing 202 n n CAA CBA HEM sing 203 n n CAA HAA HEM sing 204 n n CAA HAAA HEM sing 205 n n CBA CGA HEM sing 206 n n CBA HBA HEM sing 207 n n CBA HBAA HEM sing 208 n n CGA O1A HEM doub 209 n n CGA O2A HEM sing 210 n n C1B C2B HEM sing 211 n n C1B NB HEM sing 212 n n C2B C3B HEM doub 213 n n C2B CMB HEM sing 214 n n C3B C4B HEM sing 215 n n C3B CAB HEM sing 216 n n C4B NB HEM doub 217 n n CMB HMB HEM sing 218 n n CMB HMBA HEM sing 219 n n CMB HMBB HEM sing 220 n n CAB CBB HEM doub 221 n n CAB HAB HEM sing 222 n n CBB HBB HEM sing 223 n n CBB HBBA HEM sing 224 n n C1C C2C HEM sing 225 n y C1C NC HEM sing 226 n y C2C C3C HEM doub 227 n y C2C CMC HEM sing 228 n n C3C C4C HEM sing 229 n y C3C CAC HEM sing 230 n n C4C NC HEM sing 231 n y CMC HMC HEM sing 232 n n CMC HMCA HEM sing 233 n n CMC HMCB HEM sing 234 n n CAC CBC HEM doub 235 n n CAC HAC HEM sing 236 n n CBC HBC HEM sing 237 n n CBC HBCA HEM sing 238 n n C1D C2D HEM sing 239 n n C1D ND HEM doub 240 n n C2D C3D HEM doub 241 n n C2D CMD HEM sing 242 n n C3D C4D HEM sing 243 n n C3D CAD HEM sing 244 n n C4D ND HEM sing 245 n n CMD HMD HEM sing 246 n n CMD HMDA HEM sing 247 n n CMD HMDB HEM sing 248 n n CAD CBD HEM sing 249 n n CAD HAD HEM sing 250 n n CAD HADA HEM sing 251 n n CBD CGD HEM sing 252 n n CBD HBD HEM sing 253 n n CBD HBDA HEM sing 254 n n CGD O1D HEM doub 255 n n CGD O2D HEM sing 256 n n O2A H2A HEM sing 257 n n O2D H2D HEM sing 258 n n FE NA HEM sing 259 n n FE NB HEM sing 260 n n FE NC HEM sing 261 n n FE ND HEM sing 262 n n # _atom_sites.entry_id 8W2K _atom_sites.fract_transf_matrix[1][1] 0.006941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 ZIQ A 1 402 402 ZIQ ZIQ . G 4 A1AE7 A 1 403 403 A1AE7 22F . H 2 HEM B 1 401 401 HEM HEM . I 3 ZIQ B 1 402 402 ZIQ ZIQ . J 4 A1AE7 B 1 403 403 A1AE7 22F . K 2 HEM C 1 401 401 HEM HEM . L 3 ZIQ C 1 402 402 ZIQ ZIQ . M 4 A1AE7 C 1 403 403 A1AE7 22F . N 2 HEM D 1 401 401 HEM HEM . O 3 ZIQ D 1 402 402 ZIQ ZIQ . P 4 A1AE7 D 1 403 403 A1AE7 22F . Q 5 HOH A 1 501 1 HOH HOH . Q 5 HOH A 2 502 8 HOH HOH . Q 5 HOH A 3 503 7 HOH HOH . Q 5 HOH A 4 504 11 HOH HOH . R 5 HOH B 1 501 3 HOH HOH . R 5 HOH B 2 502 9 HOH HOH . R 5 HOH B 3 503 12 HOH HOH . R 5 HOH B 4 504 10 HOH HOH . S 5 HOH C 1 501 4 HOH HOH . T 5 HOH D 1 501 5 HOH HOH . T 5 HOH D 2 502 2 HOH HOH . T 5 HOH D 3 503 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 42.105 -56.139 -33.29 1 66.76 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . E 2 39.743 -58.342 -29.71 1 87.11 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . E 2 35.637 -57.845 -32.225 1 64.64 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . E 2 38.205 -56.6 -36.114 1 71.45 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . E 2 41.812 -56.757 -32.118 1 70.17 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . E 2 42.725 -56.929 -31.064 1 82.67 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . E 2 42.083 -57.559 -30.057 1 83.17 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . E 2 40.749 -57.762 -30.483 1 89.84 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . E 2 42.674 -57.956 -28.737 1 86.3 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . E 2 44.188 -56.516 -31.087 1 88.67 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . E 2 45.019 -57.583 -31.827 1 86.73 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . E 2 45.173 -58.803 -30.953 1 94.35 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . E 2 44.507 -59.823 -31.169 1 95.95 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . E 2 45.975 -58.812 -29.99 1 113.85 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . E 2 38.39 -58.356 -30.097 1 77.08 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . E 2 37.354 -58.835 -29.261 1 72.53 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . E 2 36.174 -58.664 -29.926 1 70.02 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . E 2 36.545 -58.114 -31.238 1 67.63 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . E 2 37.533 -59.36 -27.865 1 78.85 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . E 2 34.794 -59.05 -29.561 1 69.32 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . E 2 34.564 -59.998 -28.654 1 73.18 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . E 2 35.95 -57.479 -33.505 1 66.37 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . E 2 35.067 -57.272 -34.563 1 71.85 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . E 2 35.795 -56.905 -35.676 1 67.8 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . E 2 37.153 -56.942 -35.312 1 74.26 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . E 2 33.557 -57.359 -34.495 1 78.77 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . E 2 35.211 -56.7 -36.979 1 62.8 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . E 2 35.918 -57.045 -38.031 1 64.38 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . E 2 39.465 -56.351 -35.616 1 65.51 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . E 2 40.521 -55.742 -36.436 1 65.9 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . E 2 41.588 -55.618 -35.647 1 71.13 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . E 2 41.196 -56.123 -34.342 1 71.48 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . E 2 40.47 -55.363 -37.885 1 64.25 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . E 2 42.933 -55.038 -36.004 1 77.51 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . E 2 42.749 -53.52 -35.765 1 80.33 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . E 2 44.02 -52.694 -35.772 1 79.79 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . E 2 45.13 -53.25 -35.797 1 79.85 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . E 2 43.981 -51.442 -35.712 1 76.49 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . E 2 40.59 -57.248 -31.749 1 80.89 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . E 2 37.866 -57.961 -31.265 1 77.65 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . E 2 37.186 -57.276 -33.972 1 77.59 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . E 2 39.883 -56.499 -34.377 1 71.33 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . E 2 38.925 -57.145 -32.882 1 71.39 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 654 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 43 #