data_8W2K
#
_model_server_result.job_id            HrnC0WuyNd5RfGL5Ba-UCA 
_model_server_result.datetime_utc      '2024-11-15 03:56:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w2k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    8W2K 
#
_exptl.entry_id    8W2K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W2K 
_cell.length_a            144.081 
_cell.length_b            154.84 
_cell.length_c            88.757 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W2K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     8W2K 
_atom_sites.fract_transf_matrix[1][1]    0.006941 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 ZIQ A 1 402 402 ZIQ ZIQ . 
G 4 A1AE7 A 1 403 403 A1AE7 22F . 
H 2 HEM B 1 401 401 HEM HEM . 
I 3 ZIQ B 1 402 402 ZIQ ZIQ . 
J 4 A1AE7 B 1 403 403 A1AE7 22F . 
K 2 HEM C 1 401 401 HEM HEM . 
L 3 ZIQ C 1 402 402 ZIQ ZIQ . 
M 4 A1AE7 C 1 403 403 A1AE7 22F . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 ZIQ D 1 402 402 ZIQ ZIQ . 
P 4 A1AE7 D 1 403 403 A1AE7 22F . 
Q 5 HOH A 1 501 1 HOH HOH . 
Q 5 HOH A 2 502 8 HOH HOH . 
Q 5 HOH A 3 503 7 HOH HOH . 
Q 5 HOH A 4 504 11 HOH HOH . 
R 5 HOH B 1 501 3 HOH HOH . 
R 5 HOH B 2 502 9 HOH HOH . 
R 5 HOH B 3 503 12 HOH HOH . 
R 5 HOH B 4 504 10 HOH HOH . 
S 5 HOH C 1 501 4 HOH HOH . 
T 5 HOH D 1 501 5 HOH HOH . 
T 5 HOH D 2 502 2 HOH HOH . 
T 5 HOH D 3 503 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 2 9.418 -58.917 -52.136 1 91.8 ? CHA HEM 401 B 1 
HETATM 2 C CHB HEM . . . H 2 11.418 -55.536 -54.992 1 98.85 ? CHB HEM 401 B 1 
HETATM 3 C CHC HEM . . . H 2 15.076 -55.087 -51.763 1 76.97 ? CHC HEM 401 B 1 
HETATM 4 C CHD HEM . . . H 2 13.553 -59.164 -49.616 1 82.94 ? CHD HEM 401 B 1 
HETATM 5 C C1A HEM . . . H 2 9.636 -58.01 -53.158 1 100.14 ? C1A HEM 401 B 1 
HETATM 6 C C2A HEM . . . H 2 8.725 -57.75 -54.197 1 110.93 ? C2A HEM 401 B 1 
HETATM 7 C C3A HEM . . . H 2 9.286 -56.815 -55.017 1 108.9 ? C3A HEM 401 B 1 
HETATM 8 C C4A HEM . . . H 2 10.552 -56.476 -54.473 1 105.42 ? C4A HEM 401 B 1 
HETATM 9 C CMA HEM . . . H 2 8.64 -56.217 -56.252 1 106.03 ? CMA HEM 401 B 1 
HETATM 10 C CAA HEM . . . H 2 7.372 -58.406 -54.357 1 119.1 ? CAA HEM 401 B 1 
HETATM 11 C CBA HEM . . . H 2 7.552 -59.757 -55.091 1 128.03 ? CBA HEM 401 B 1 
HETATM 12 C CGA HEM . . . H 2 7.854 -59.582 -56.582 1 115.4 ? CGA HEM 401 B 1 
HETATM 13 O O1A HEM . . . H 2 8.78 -60.196 -57.137 1 108.95 ? O1A HEM 401 B 1 
HETATM 14 O O2A HEM . . . H 2 7.154 -58.833 -57.307 1 110.91 ? O2A HEM 401 B 1 
HETATM 15 C C1B HEM . . . H 2 12.574 -55.104 -54.316 1 98.4 ? C1B HEM 401 B 1 
HETATM 16 C C2B HEM . . . H 2 13.382 -54.008 -54.746 1 90.25 ? C2B HEM 401 B 1 
HETATM 17 C C3B HEM . . . H 2 14.384 -53.828 -53.826 1 78.53 ? C3B HEM 401 B 1 
HETATM 18 C C4B HEM . . . H 2 14.213 -54.895 -52.845 1 79.61 ? C4B HEM 401 B 1 
HETATM 19 C CMB HEM . . . H 2 13.112 -53.172 -55.958 1 94.66 ? CMB HEM 401 B 1 
HETATM 20 C CAB HEM . . . H 2 15.536 -52.925 -53.821 1 79.49 ? CAB HEM 401 B 1 
HETATM 21 C CBB HEM . . . H 2 16.031 -52.45 -54.961 1 87.07 ? CBB HEM 401 B 1 
HETATM 22 C C1C HEM . . . H 2 14.997 -56.176 -50.899 1 78.69 ? C1C HEM 401 B 1 
HETATM 23 C C2C HEM . . . H 2 15.836 -56.416 -49.812 1 87.59 ? C2C HEM 401 B 1 
HETATM 24 C C3C HEM . . . H 2 15.386 -57.553 -49.182 1 85.62 ? C3C HEM 401 B 1 
HETATM 25 C C4C HEM . . . H 2 14.295 -58.068 -49.954 1 86.15 ? C4C HEM 401 B 1 
HETATM 26 C CMC HEM . . . H 2 16.993 -55.561 -49.347 1 94.32 ? CMC HEM 401 B 1 
HETATM 27 C CAC HEM . . . H 2 16.12 -58.131 -48.065 1 73.57 ? CAC HEM 401 B 1 
HETATM 28 C CBC HEM . . . H 2 16.298 -59.433 -47.946 1 74.85 ? CBC HEM 401 B 1 
HETATM 29 C C1D HEM . . . H 2 12.289 -59.365 -50.116 1 91.57 ? C1D HEM 401 B 1 
HETATM 30 C C2D HEM . . . H 2 11.406 -60.362 -49.538 1 84.63 ? C2D HEM 401 B 1 
HETATM 31 C C3D HEM . . . H 2 10.259 -60.305 -50.232 1 95.11 ? C3D HEM 401 B 1 
HETATM 32 C C4D HEM . . . H 2 10.424 -59.248 -51.233 1 94.24 ? C4D HEM 401 B 1 
HETATM 33 C CMD HEM . . . H 2 11.721 -61.306 -48.417 1 81.2 ? CMD HEM 401 B 1 
HETATM 34 C CAD HEM . . . H 2 9.046 -61.164 -49.995 1 99.84 ? CAD HEM 401 B 1 
HETATM 35 C CBD HEM . . . H 2 8.273 -60.443 -48.871 1 101.54 ? CBD HEM 401 B 1 
HETATM 36 C CGD HEM . . . H 2 6.827 -60.894 -48.748 1 100.14 ? CGD HEM 401 B 1 
HETATM 37 O O1D HEM . . . H 2 6.284 -61.669 -49.59 1 91.75 ? O1D HEM 401 B 1 
HETATM 38 O O2D HEM . . . H 2 6.151 -60.475 -47.775 1 89.9 ? O2D HEM 401 B 1 
HETATM 39 N NA HEM . . . H 2 10.759 -57.213 -53.349 1 107.61 ? NA HEM 401 B 1 
HETATM 40 N NB HEM . . . H 2 13.111 -55.597 -53.195 1 96.27 ? NB HEM 401 B 1 
HETATM 41 N NC HEM . . . H 2 14.078 -57.183 -50.971 1 79.5 ? NC HEM 401 B 1 
HETATM 42 N ND HEM . . . H 2 11.666 -58.702 -51.115 1 106.41 ? ND HEM 401 B 1 
HETATM 43 FE FE HEM . . . H 2 12.325 -57.21 -52.118 1 92.69 ? FE HEM 401 B 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           402 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#