data_8W2K
#
_model_server_result.job_id            dEqDvfu3yjh3RfM3O9y3tg 
_model_server_result.datetime_utc      '2024-11-15 03:41:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w2k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    8W2K 
#
_exptl.entry_id    8W2K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W2K 
_cell.length_a            144.081 
_cell.length_b            154.84 
_cell.length_c            88.757 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W2K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     8W2K 
_atom_sites.fract_transf_matrix[1][1]    0.006941 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 ZIQ A 1 402 402 ZIQ ZIQ . 
G 4 A1AE7 A 1 403 403 A1AE7 22F . 
H 2 HEM B 1 401 401 HEM HEM . 
I 3 ZIQ B 1 402 402 ZIQ ZIQ . 
J 4 A1AE7 B 1 403 403 A1AE7 22F . 
K 2 HEM C 1 401 401 HEM HEM . 
L 3 ZIQ C 1 402 402 ZIQ ZIQ . 
M 4 A1AE7 C 1 403 403 A1AE7 22F . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 ZIQ D 1 402 402 ZIQ ZIQ . 
P 4 A1AE7 D 1 403 403 A1AE7 22F . 
Q 5 HOH A 1 501 1 HOH HOH . 
Q 5 HOH A 2 502 8 HOH HOH . 
Q 5 HOH A 3 503 7 HOH HOH . 
Q 5 HOH A 4 504 11 HOH HOH . 
R 5 HOH B 1 501 3 HOH HOH . 
R 5 HOH B 2 502 9 HOH HOH . 
R 5 HOH B 3 503 12 HOH HOH . 
R 5 HOH B 4 504 10 HOH HOH . 
S 5 HOH C 1 501 4 HOH HOH . 
T 5 HOH D 1 501 5 HOH HOH . 
T 5 HOH D 2 502 2 HOH HOH . 
T 5 HOH D 3 503 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . N 2 -2.754 -37.319 -32.809 1 67.59 ? CHA HEM 401 D 1 
HETATM 2 C CHB HEM . . . N 2 -2.477 -40.257 -29.024 1 65.13 ? CHB HEM 401 D 1 
HETATM 3 C CHC HEM . . . N 2 2.243 -39.161 -28.585 1 65.51 ? CHC HEM 401 D 1 
HETATM 4 C CHD HEM . . . N 2 1.711 -35.607 -31.838 1 64.03 ? CHD HEM 401 D 1 
HETATM 5 C C1A HEM . . . N 2 -3.076 -38.214 -31.819 1 66.39 ? C1A HEM 401 D 1 
HETATM 6 C C2A HEM . . . N 2 -4.338 -38.808 -31.654 1 70.85 ? C2A HEM 401 D 1 
HETATM 7 C C3A HEM . . . N 2 -4.253 -39.624 -30.599 1 74.94 ? C3A HEM 401 D 1 
HETATM 8 C C4A HEM . . . N 2 -2.939 -39.538 -30.09 1 67.74 ? C4A HEM 401 D 1 
HETATM 9 C CMA HEM . . . N 2 -5.388 -40.455 -30.045 1 75.4 ? CMA HEM 401 D 1 
HETATM 10 C CAA HEM . . . N 2 -5.587 -38.609 -32.471 1 72.43 ? CAA HEM 401 D 1 
HETATM 11 C CBA HEM . . . N 2 -6.274 -37.321 -32.008 1 79.4 ? CBA HEM 401 D 1 
HETATM 12 C CGA HEM . . . N 2 -6.997 -37.547 -30.702 1 81 ? CGA HEM 401 D 1 
HETATM 13 O O1A HEM . . . N 2 -6.539 -37.112 -29.612 1 81.3 ? O1A HEM 401 D 1 
HETATM 14 O O2A HEM . . . N 2 -8.057 -38.203 -30.717 1 92.45 ? O2A HEM 401 D 1 
HETATM 15 C C1B HEM . . . N 2 -1.138 -40.208 -28.624 1 67.55 ? C1B HEM 401 D 1 
HETATM 16 C C2B HEM . . . N 2 -0.654 -41.014 -27.578 1 65.82 ? C2B HEM 401 D 1 
HETATM 17 C C3B HEM . . . N 2 0.703 -40.775 -27.462 1 65.19 ? C3B HEM 401 D 1 
HETATM 18 C C4B HEM . . . N 2 0.987 -39.709 -28.434 1 61.8 ? C4B HEM 401 D 1 
HETATM 19 C CMB HEM . . . N 2 -1.483 -41.984 -26.794 1 71.02 ? CMB HEM 401 D 1 
HETATM 20 C CAB HEM . . . N 2 1.673 -41.261 -26.461 1 63.97 ? CAB HEM 401 D 1 
HETATM 21 C CBB HEM . . . N 2 1.283 -41.755 -25.269 1 62.62 ? CBB HEM 401 D 1 
HETATM 22 C C1C HEM . . . N 2 2.52 -38.088 -29.4 1 65.69 ? C1C HEM 401 D 1 
HETATM 23 C C2C HEM . . . N 2 3.736 -37.427 -29.475 1 70.31 ? C2C HEM 401 D 1 
HETATM 24 C C3C HEM . . . N 2 3.593 -36.419 -30.421 1 67.63 ? C3C HEM 401 D 1 
HETATM 25 C C4C HEM . . . N 2 2.27 -36.453 -30.89 1 68.29 ? C4C HEM 401 D 1 
HETATM 26 C CMC HEM . . . N 2 4.997 -37.823 -28.702 1 67.14 ? CMC HEM 401 D 1 
HETATM 27 C CAC HEM . . . N 2 4.678 -35.479 -30.709 1 69.72 ? CAC HEM 401 D 1 
HETATM 28 C CBC HEM . . . N 2 4.476 -34.21 -31.084 1 64.74 ? CBC HEM 401 D 1 
HETATM 29 C C1D HEM . . . N 2 0.422 -35.828 -32.34 1 68.18 ? C1D HEM 401 D 1 
HETATM 30 C C2D HEM . . . N 2 -0.073 -35.092 -33.49 1 71.26 ? C2D HEM 401 D 1 
HETATM 31 C C3D HEM . . . N 2 -1.285 -35.571 -33.763 1 69.17 ? C3D HEM 401 D 1 
HETATM 32 C C4D HEM . . . N 2 -1.552 -36.644 -32.813 1 66.91 ? C4D HEM 401 D 1 
HETATM 33 C CMD HEM . . . N 2 0.575 -33.973 -34.241 1 79.82 ? CMD HEM 401 D 1 
HETATM 34 C CAD HEM . . . N 2 -2.142 -35.076 -34.875 1 68.28 ? CAD HEM 401 D 1 
HETATM 35 C CBD HEM . . . N 2 -1.792 -36.039 -36.028 1 67.89 ? CBD HEM 401 D 1 
HETATM 36 C CGD HEM . . . N 2 -2.632 -35.875 -37.269 1 71.68 ? CGD HEM 401 D 1 
HETATM 37 O O1D HEM . . . N 2 -3.817 -35.391 -37.188 1 69.1 ? O1D HEM 401 D 1 
HETATM 38 O O2D HEM . . . N 2 -2.135 -36.277 -38.348 1 60.56 ? O2D HEM 401 D 1 
HETATM 39 N NA HEM . . . N 2 -2.212 -38.694 -30.864 1 71.25 ? NA HEM 401 D 1 
HETATM 40 N NB HEM . . . N 2 -0.126 -39.455 -29.109 1 64.63 ? NB HEM 401 D 1 
HETATM 41 N NC HEM . . . N 2 1.649 -37.491 -30.228 1 67.61 ? NC HEM 401 D 1 
HETATM 42 N ND HEM . . . N 2 -0.494 -36.767 -31.982 1 66.34 ? ND HEM 401 D 1 
HETATM 43 FE FE HEM . . . N 2 -0.292 -38.09 -30.683 1 66.83 ? FE HEM 401 D 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#