data_8W2X
#
_model_server_result.job_id            HKUSYdHcjx3I1B6HerxgCA 
_model_server_result.datetime_utc      '2025-01-09 16:26:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    8W2X 
#
_exptl.entry_id    8W2X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.464 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]propan-1-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8W2X 
_cell.length_a            96.62 
_cell.length_b            96.62 
_cell.length_c            147.1 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,J 1 1 
B,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 47 A CYS 491 1_555 C C0V A1AFR . A A1AFR 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? 
covale ? covale2 B SG CYS 47 B CYS 491 1_555 H C0V A1AFR . B A1AFR 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
#
_chem_comp.formula           'C22 H24 N6 O3' 
_chem_comp.formula_weight    420.464 
_chem_comp.id                A1AFR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]propan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C0V C0M A1AFR sing 1 n n 
C0M C0P A1AFR sing 2 n n 
C0U O02 A1AFR sing 3 n n 
O02 C0D A1AFR sing 4 n n 
C0P O03 A1AFR doub 5 n n 
C0P N07 A1AFR sing 6 n n 
C0D C0R A1AFR doub 7 n y 
C0D C0C A1AFR sing 8 n y 
C0R C0J A1AFR sing 9 n y 
C0C C0E A1AFR doub 10 n y 
C0I N07 A1AFR sing 11 n n 
C0I C0K A1AFR sing 12 n n 
N07 C0T A1AFR sing 13 n n 
C0J C0S A1AFR sing 14 n n 
C0J C0O A1AFR doub 15 n y 
C0S C0H A1AFR trip 16 n n 
C0E C0O A1AFR sing 17 n y 
C0E O01 A1AFR sing 18 n n 
N09 C0G A1AFR doub 19 n y 
N09 N04 A1AFR sing 20 n y 
C0H C0G A1AFR sing 21 n n 
C0N O01 A1AFR sing 22 n n 
C0K N04 A1AFR sing 23 n n 
C0K C0Q A1AFR sing 24 n n 
C0T C0Q A1AFR sing 25 n n 
C0G C0A A1AFR sing 26 n y 
N04 C0B A1AFR sing 27 n y 
C0A C0B A1AFR doub 28 n y 
C0A C0F A1AFR sing 29 n y 
C0B N08 A1AFR sing 30 n y 
N08 C0L A1AFR doub 31 n y 
C0F N05 A1AFR sing 32 n n 
C0F N06 A1AFR doub 33 n y 
C0L N06 A1AFR sing 34 n y 
C0N H1 A1AFR sing 35 n n 
C0N H2 A1AFR sing 36 n n 
C0N H3 A1AFR sing 37 n n 
C0O H4 A1AFR sing 38 n n 
C0C H5 A1AFR sing 39 n n 
C0U H6 A1AFR sing 40 n n 
C0U H7 A1AFR sing 41 n n 
C0U H8 A1AFR sing 42 n n 
C0R H9 A1AFR sing 43 n n 
N05 H10 A1AFR sing 44 n n 
N05 H11 A1AFR sing 45 n n 
C0L H12 A1AFR sing 46 n n 
C0K H13 A1AFR sing 47 n n 
C0I H14 A1AFR sing 48 n n 
C0I H15 A1AFR sing 49 n n 
C0Q H16 A1AFR sing 50 n n 
C0Q H17 A1AFR sing 51 n n 
C0T H18 A1AFR sing 52 n n 
C0T H19 A1AFR sing 53 n n 
C0M H20 A1AFR sing 54 n n 
C0M H21 A1AFR sing 55 n n 
C0V H22 A1AFR sing 56 n n 
C0V H23 A1AFR sing 57 n n 
C0V H24 A1AFR sing 58 n n 
#
_atom_sites.entry_id                     8W2X 
_atom_sites.fract_transf_matrix[1][1]    0.01035 
_atom_sites.fract_transf_matrix[1][2]    0.005975 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011951 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1AFR A 1 801 800 A1AFR DRG . 
D 3 GOL A 1 802 5 GOL GOL . 
E 4 SO4 A 1 803 1 SO4 SO4 . 
F 4 SO4 A 1 804 2 SO4 SO4 . 
G 4 SO4 A 1 805 3 SO4 SO4 . 
H 2 A1AFR B 1 801 800 A1AFR DRG . 
I 4 SO4 B 1 802 4 SO4 SO4 . 
J 5 HOH A 1 901 16 HOH HOH . 
J 5 HOH A 2 902 22 HOH HOH . 
J 5 HOH A 3 903 49 HOH HOH . 
J 5 HOH A 4 904 13 HOH HOH . 
J 5 HOH A 5 905 2 HOH HOH . 
J 5 HOH A 6 906 14 HOH HOH . 
J 5 HOH A 7 907 18 HOH HOH . 
J 5 HOH A 8 908 23 HOH HOH . 
J 5 HOH A 9 909 9 HOH HOH . 
J 5 HOH A 10 910 20 HOH HOH . 
J 5 HOH A 11 911 17 HOH HOH . 
J 5 HOH A 12 912 1 HOH HOH . 
J 5 HOH A 13 913 15 HOH HOH . 
J 5 HOH A 14 914 21 HOH HOH . 
J 5 HOH A 15 915 10 HOH HOH . 
K 5 HOH B 1 901 32 HOH HOH . 
K 5 HOH B 2 902 25 HOH HOH . 
K 5 HOH B 3 903 29 HOH HOH . 
K 5 HOH B 4 904 41 HOH HOH . 
K 5 HOH B 5 905 31 HOH HOH . 
K 5 HOH B 6 906 26 HOH HOH . 
K 5 HOH B 7 907 39 HOH HOH . 
K 5 HOH B 8 908 33 HOH HOH . 
K 5 HOH B 9 909 12 HOH HOH . 
K 5 HOH B 10 910 43 HOH HOH . 
K 5 HOH B 11 911 35 HOH HOH . 
K 5 HOH B 12 912 34 HOH HOH . 
K 5 HOH B 13 913 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C0N A1AFR . . . C 2 23.551 7.225 19.455 1 56.96 ? C0N A1AFR 801 A 1 
HETATM 2 O O01 A1AFR . . . C 2 22.912 6.095 19.995 1 55.89 ? O01 A1AFR 801 A 1 
HETATM 3 C C0E A1AFR . . . C 2 22.701 5.006 19.131 1 55.18 ? C0E A1AFR 801 A 1 
HETATM 4 C C0O A1AFR . . . C 2 21.7 4.098 19.447 1 54.74 ? C0O A1AFR 801 A 1 
HETATM 5 C C0C A1AFR . . . C 2 23.471 4.806 17.981 1 55.06 ? C0C A1AFR 801 A 1 
HETATM 6 C C0D A1AFR . . . C 2 23.241 3.705 17.161 1 55.29 ? C0D A1AFR 801 A 1 
HETATM 7 O O02 A1AFR . . . C 2 23.964 3.435 15.993 1 56.36 ? O02 A1AFR 801 A 1 
HETATM 8 C C0U A1AFR . . . C 2 25.209 4.044 15.809 1 57.35 ? C0U A1AFR 801 A 1 
HETATM 9 C C0R A1AFR . . . C 2 22.242 2.812 17.486 1 56.2 ? C0R A1AFR 801 A 1 
HETATM 10 C C0J A1AFR . . . C 2 21.48 3.009 18.621 1 55.62 ? C0J A1AFR 801 A 1 
HETATM 11 C C0S A1AFR . . . C 2 20.387 2.012 18.951 1 55.52 ? C0S A1AFR 801 A 1 
HETATM 12 C C0H A1AFR . . . C 2 19.52 1.307 19.283 1 56.48 ? C0H A1AFR 801 A 1 
HETATM 13 C C0G A1AFR . . . C 2 18.369 0.443 19.721 1 59.41 ? C0G A1AFR 801 A 1 
HETATM 14 N N09 A1AFR . . . C 2 17.192 0.433 19.151 1 62.8 ? N09 A1AFR 801 A 1 
HETATM 15 C C0A A1AFR . . . C 2 18.376 -0.488 20.805 1 60.71 ? C0A A1AFR 801 A 1 
HETATM 16 C C0F A1AFR . . . C 2 19.301 -0.936 21.781 1 60.39 ? C0F A1AFR 801 A 1 
HETATM 17 N N05 A1AFR . . . C 2 20.653 -0.417 21.863 1 58.17 ? N05 A1AFR 801 A 1 
HETATM 18 N N06 A1AFR . . . C 2 18.916 -1.863 22.655 1 62.61 ? N06 A1AFR 801 A 1 
HETATM 19 C C0L A1AFR . . . C 2 17.677 -2.37 22.618 1 64.9 ? C0L A1AFR 801 A 1 
HETATM 20 N N08 A1AFR . . . C 2 16.778 -1.982 21.725 1 65.3 ? N08 A1AFR 801 A 1 
HETATM 21 C C0B A1AFR . . . C 2 17.105 -1.04 20.806 1 63.81 ? C0B A1AFR 801 A 1 
HETATM 22 N N04 A1AFR . . . C 2 16.422 -0.46 19.795 1 66.63 ? N04 A1AFR 801 A 1 
HETATM 23 C C0K A1AFR . . . C 2 15.094 -0.757 19.481 1 71.53 ? C0K A1AFR 801 A 1 
HETATM 24 C C0I A1AFR . . . C 2 14.721 -0.355 17.995 1 74.64 ? C0I A1AFR 801 A 1 
HETATM 25 C C0Q A1AFR . . . C 2 14.139 0.116 20.299 1 73.12 ? C0Q A1AFR 801 A 1 
HETATM 26 C C0T A1AFR . . . C 2 13.996 1.256 19.568 1 74.03 ? C0T A1AFR 801 A 1 
HETATM 27 N N07 A1AFR . . . C 2 14.442 0.929 18.045 1 75.97 ? N07 A1AFR 801 A 1 
HETATM 28 C C0P A1AFR . . . C 2 14.515 1.899 16.97 1 81.95 ? C0P A1AFR 801 A 1 
HETATM 29 O O03 A1AFR . . . C 2 14.223 3.017 17.214 1 84.29 ? O03 A1AFR 801 A 1 
HETATM 30 C C0M A1AFR . . . C 2 14.944 1.538 15.546 1 86.07 ? C0M A1AFR 801 A 1 
HETATM 31 C C0V A1AFR . . . C 2 16.194 2.303 15.115 1 90.17 ? C0V A1AFR 801 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#