data_8W2X # _model_server_result.job_id VZuE3w0LncPKHn1AfwiPzA _model_server_result.datetime_utc '2025-01-09 16:15:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8W2X # _exptl.entry_id 8W2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W2X _cell.length_a 96.62 _cell.length_b 96.62 _cell.length_c 147.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 47 A CYS 491 1_555 C C0V A1AFR . A A1AFR 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale2 B SG CYS 47 B CYS 491 1_555 H C0V A1AFR . B A1AFR 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 187 n n C1 C2 GOL sing 188 n n C1 H11 GOL sing 189 n n C1 H12 GOL sing 190 n n O1 HO1 GOL sing 191 n n C2 O2 GOL sing 192 n n C2 C3 GOL sing 193 n n C2 H2 GOL sing 194 n n O2 HO2 GOL sing 195 n n C3 O3 GOL sing 196 n n C3 H31 GOL sing 197 n n C3 H32 GOL sing 198 n n O3 HO3 GOL sing 199 n n # _atom_sites.entry_id 8W2X _atom_sites.fract_transf_matrix[1][1] 0.01035 _atom_sites.fract_transf_matrix[1][2] 0.005975 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AFR A 1 801 800 A1AFR DRG . D 3 GOL A 1 802 5 GOL GOL . E 4 SO4 A 1 803 1 SO4 SO4 . F 4 SO4 A 1 804 2 SO4 SO4 . G 4 SO4 A 1 805 3 SO4 SO4 . H 2 A1AFR B 1 801 800 A1AFR DRG . I 4 SO4 B 1 802 4 SO4 SO4 . J 5 HOH A 1 901 16 HOH HOH . J 5 HOH A 2 902 22 HOH HOH . J 5 HOH A 3 903 49 HOH HOH . J 5 HOH A 4 904 13 HOH HOH . J 5 HOH A 5 905 2 HOH HOH . J 5 HOH A 6 906 14 HOH HOH . J 5 HOH A 7 907 18 HOH HOH . J 5 HOH A 8 908 23 HOH HOH . J 5 HOH A 9 909 9 HOH HOH . J 5 HOH A 10 910 20 HOH HOH . J 5 HOH A 11 911 17 HOH HOH . J 5 HOH A 12 912 1 HOH HOH . J 5 HOH A 13 913 15 HOH HOH . J 5 HOH A 14 914 21 HOH HOH . J 5 HOH A 15 915 10 HOH HOH . K 5 HOH B 1 901 32 HOH HOH . K 5 HOH B 2 902 25 HOH HOH . K 5 HOH B 3 903 29 HOH HOH . K 5 HOH B 4 904 41 HOH HOH . K 5 HOH B 5 905 31 HOH HOH . K 5 HOH B 6 906 26 HOH HOH . K 5 HOH B 7 907 39 HOH HOH . K 5 HOH B 8 908 33 HOH HOH . K 5 HOH B 9 909 12 HOH HOH . K 5 HOH B 10 910 43 HOH HOH . K 5 HOH B 11 911 35 HOH HOH . K 5 HOH B 12 912 34 HOH HOH . K 5 HOH B 13 913 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 19.156 27.992 40.205 1 88.22 ? C1 GOL 802 A 1 HETATM 2 O O1 GOL . . . D 3 20.447 28.534 39.943 1 88.62 ? O1 GOL 802 A 1 HETATM 3 C C2 GOL . . . D 3 18.114 29.081 40.336 1 87.7 ? C2 GOL 802 A 1 HETATM 4 O O2 GOL . . . D 3 18.335 30.069 39.33 1 87.73 ? O2 GOL 802 A 1 HETATM 5 C C3 GOL . . . D 3 16.694 28.56 40.241 1 87.26 ? C3 GOL 802 A 1 HETATM 6 O O3 GOL . . . D 3 15.752 29.493 40.764 1 86.74 ? O3 GOL 802 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 403 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #