data_8W31 # _model_server_result.job_id R9FUU3tSF1PFEBhyZLjgAQ _model_server_result.datetime_utc '2025-02-05 17:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":407}' # _entry.id 8W31 # _exptl.entry_id 8W31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.596 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-1-(6-benzyl-3-(4-(1,2,3,4-tetrahydroquinoline-1-carbonyl)phenyl)-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl)ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W31 _cell.length_a 83.54 _cell.length_b 83.54 _cell.length_c 258.77 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 64 B GLU 64 1_555 B N SEP 65 B SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C SEP 65 B SEP 65 1_555 B N THR 66 B THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 C C GLU 64 C GLU 64 1_555 C N SEP 65 C SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 C C SEP 65 C SEP 65 1_555 C N THR 66 C THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A SG CYS 11 A CYS 150 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A SG CYS 15 A CYS 154 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A SG CYS 27 A CYS 166 1_555 G ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 30 A CYS 169 1_555 G ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 A SG CYS 57 A CYS 196 1_555 G ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 A SG CYS 62 A CYS 201 1_555 G ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc7 A SG CYS 73 A CYS 212 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 A NE2 HIS 76 A HIS 215 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 A SG CYS 99 A CYS 238 1_555 H ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc10 A SG CYS 102 A CYS 241 1_555 H ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 A SG CYS 114 A CYS 253 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 A ND1 HIS 118 A HIS 257 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc13 A SG CYS 121 A CYS 260 1_555 H ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 A SG CYS 124 A CYS 263 1_555 H ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc15 A SG CYS 150 A CYS 289 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc16 A SG CYS 154 A CYS 293 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc17 A SG CYS 193 A CYS 332 1_555 I ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc18 A SG CYS 198 A CYS 337 1_555 I ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc19 A SG CYS 213 A CYS 352 1_555 I ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc20 A SG CYS 221 A CYS 360 1_555 I ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc21 A SG CYS 226 A CYS 365 1_555 F ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc22 A SG CYS 229 A CYS 368 1_555 F ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc23 A NE2 HIS 234 A HIS 373 1_555 F ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc24 A SG CYS 238 A CYS 377 1_555 F ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? # _chem_comp.formula 'C31 H30 N4 O2' _chem_comp.formula_weight 490.596 _chem_comp.id A1AE9 _chem_comp.mon_nstd_flag . _chem_comp.name (S)-1-(6-benzyl-3-(4-(1,2,3,4-tetrahydroquinoline-1-carbonyl)phenyl)-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl)ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-[(6S,8R)-6-benzyl-3-[4-(3,4-dihydroquinoline-1(2H)-carbonyl)phenyl]-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl]ethan-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 A1AE9 doub 1 n y C20 C15 A1AE9 sing 2 n y O1 C2 A1AE9 doub 3 n n C19 C18 A1AE9 sing 4 n y C14 C15 A1AE9 sing 5 n n C14 C13 A1AE9 sing 6 n n C15 C16 A1AE9 doub 7 n y C18 C17 A1AE9 doub 8 n y C4 C5 A1AE9 doub 9 n y C4 C3 A1AE9 sing 10 n y C2 C3 A1AE9 sing 11 n n C2 N28 A1AE9 sing 12 n n C5 C6 A1AE9 sing 13 n y C3 C27 A1AE9 doub 14 n y C11 N10 A1AE9 doub 15 n y C11 C7 A1AE9 sing 16 n y C16 C17 A1AE9 sing 17 n y N10 N9 A1AE9 sing 18 n y C6 C7 A1AE9 sing 19 n n C6 C26 A1AE9 doub 20 n y C7 C8 A1AE9 doub 21 n y C27 C26 A1AE9 sing 22 n y N9 C8 A1AE9 sing 23 n y N9 C12 A1AE9 sing 24 n n C8 C25 A1AE9 sing 25 n n C12 C13 A1AE9 sing 26 n n C13 N21 A1AE9 sing 27 n n C25 N21 A1AE9 sing 28 n n C37 N28 A1AE9 sing 29 n n C37 C36 A1AE9 sing 30 n n N28 C29 A1AE9 sing 31 n n C36 C35 A1AE9 sing 32 n n N21 C22 A1AE9 sing 33 n n C35 C30 A1AE9 sing 34 n n C29 C34 A1AE9 doub 35 n y C29 C30 A1AE9 sing 36 n y C22 C23 A1AE9 sing 37 n n C22 O24 A1AE9 doub 38 n n C34 C33 A1AE9 sing 39 n y C30 C31 A1AE9 doub 40 n y C33 C32 A1AE9 doub 41 n y C31 C32 A1AE9 sing 42 n y C4 H1 A1AE9 sing 43 n n C5 H2 A1AE9 sing 44 n n C13 H3 A1AE9 sing 45 n n C17 H4 A1AE9 sing 46 n n C20 H5 A1AE9 sing 47 n n C26 H6 A1AE9 sing 48 n n C11 H7 A1AE9 sing 49 n n C12 H8 A1AE9 sing 50 n n C12 H9 A1AE9 sing 51 n n C14 H10 A1AE9 sing 52 n n C14 H11 A1AE9 sing 53 n n C16 H12 A1AE9 sing 54 n n C18 H13 A1AE9 sing 55 n n C19 H14 A1AE9 sing 56 n n C23 H15 A1AE9 sing 57 n n C23 H16 A1AE9 sing 58 n n C23 H17 A1AE9 sing 59 n n C25 H18 A1AE9 sing 60 n n C25 H19 A1AE9 sing 61 n n C27 H20 A1AE9 sing 62 n n C31 H21 A1AE9 sing 63 n n C32 H22 A1AE9 sing 64 n n C33 H23 A1AE9 sing 65 n n C34 H24 A1AE9 sing 66 n n C35 H25 A1AE9 sing 67 n n C35 H26 A1AE9 sing 68 n n C36 H27 A1AE9 sing 69 n n C36 H28 A1AE9 sing 70 n n C37 H29 A1AE9 sing 71 n n C37 H30 A1AE9 sing 72 n n # _atom_sites.entry_id 8W31 _atom_sites.fract_transf_matrix[1][1] 0.01197 _atom_sites.fract_transf_matrix[1][2] 0.006911 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 401 506 ZN ZN . E 3 ZN A 1 402 501 ZN ZN . F 3 ZN A 1 403 502 ZN ZN . G 3 ZN A 1 404 503 ZN ZN . H 3 ZN A 1 405 504 ZN ZN . I 3 ZN A 1 406 505 ZN ZN . J 4 A1AE9 A 1 407 601 A1AE9 LIG . K 5 GOL A 1 408 602 GOL GOL . L 6 HOH A 1 501 18 HOH HOH . L 6 HOH A 2 502 22 HOH HOH . L 6 HOH A 3 503 5 HOH HOH . L 6 HOH A 4 504 3 HOH HOH . L 6 HOH A 5 505 7 HOH HOH . L 6 HOH A 6 506 37 HOH HOH . L 6 HOH A 7 507 23 HOH HOH . L 6 HOH A 8 508 19 HOH HOH . L 6 HOH A 9 509 29 HOH HOH . L 6 HOH A 10 510 1 HOH HOH . L 6 HOH A 11 511 11 HOH HOH . L 6 HOH A 12 512 14 HOH HOH . L 6 HOH A 13 513 40 HOH HOH . L 6 HOH A 14 514 45 HOH HOH . L 6 HOH A 15 515 24 HOH HOH . L 6 HOH A 16 516 34 HOH HOH . L 6 HOH A 17 517 4 HOH HOH . L 6 HOH A 18 518 46 HOH HOH . L 6 HOH A 19 519 43 HOH HOH . L 6 HOH A 20 520 27 HOH HOH . L 6 HOH A 21 521 33 HOH HOH . L 6 HOH A 22 522 2 HOH HOH . L 6 HOH A 23 523 41 HOH HOH . L 6 HOH A 24 524 39 HOH HOH . L 6 HOH A 25 525 44 HOH HOH . M 6 HOH B 1 101 32 HOH HOH . M 6 HOH B 2 102 36 HOH HOH . M 6 HOH B 3 103 35 HOH HOH . N 6 HOH C 1 101 12 HOH HOH . N 6 HOH C 2 102 30 HOH HOH . N 6 HOH C 3 103 42 HOH HOH . N 6 HOH C 4 104 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AE9 . . . J 4 -22.881 40.984 -40.661 1 118.7 ? C4 A1AE9 407 A 1 HETATM 2 C C5 A1AE9 . . . J 4 -24.137 40.416 -40.551 1 107.96 ? C5 A1AE9 407 A 1 HETATM 3 C C6 A1AE9 . . . J 4 -24.281 39.063 -40.266 1 107.39 ? C6 A1AE9 407 A 1 HETATM 4 C C7 A1AE9 . . . J 4 -25.626 38.442 -40.229 1 103.96 ? C7 A1AE9 407 A 1 HETATM 5 C C8 A1AE9 . . . J 4 -26.833 39.049 -39.991 1 113.72 ? C8 A1AE9 407 A 1 HETATM 6 C C13 A1AE9 . . . J 4 -29.544 39.724 -39.845 1 100.38 ? C13 A1AE9 407 A 1 HETATM 7 C C15 A1AE9 . . . J 4 -29.834 41.884 -41.11 1 122.13 ? C15 A1AE9 407 A 1 HETATM 8 C C17 A1AE9 . . . J 4 -30.945 43.891 -40.386 1 111.49 ? C17 A1AE9 407 A 1 HETATM 9 C C20 A1AE9 . . . J 4 -28.84 42.669 -41.675 1 101.86 ? C20 A1AE9 407 A 1 HETATM 10 C C22 A1AE9 . . . J 4 -28.764 41.061 -37.917 1 89.55 ? C22 A1AE9 407 A 1 HETATM 11 C C26 A1AE9 . . . J 4 -23.133 38.295 -40.087 1 98.25 ? C26 A1AE9 407 A 1 HETATM 12 C C11 A1AE9 . . . J 4 -25.942 37.099 -40.476 1 80.91 ? C11 A1AE9 407 A 1 HETATM 13 C C12 A1AE9 . . . J 4 -29.217 38.247 -39.95 1 84.95 ? C12 A1AE9 407 A 1 HETATM 14 C C14 A1AE9 . . . J 4 -29.778 40.38 -41.206 1 118.06 ? C14 A1AE9 407 A 1 HETATM 15 C C16 A1AE9 . . . J 4 -30.887 42.512 -40.464 1 107.57 ? C16 A1AE9 407 A 1 HETATM 16 C C18 A1AE9 . . . J 4 -29.952 44.66 -40.952 1 121.47 ? C18 A1AE9 407 A 1 HETATM 17 C C19 A1AE9 . . . J 4 -28.9 44.048 -41.596 1 114.23 ? C19 A1AE9 407 A 1 HETATM 18 C C2 A1AE9 . . . J 4 -20.396 40.861 -40.594 1 107.1 ? C2 A1AE9 407 A 1 HETATM 19 C C23 A1AE9 . . . J 4 -30.151 41.002 -37.376 1 99.68 ? C23 A1AE9 407 A 1 HETATM 20 C C25 A1AE9 . . . J 4 -27.184 40.46 -39.662 1 98.19 ? C25 A1AE9 407 A 1 HETATM 21 C C27 A1AE9 . . . J 4 -21.878 38.864 -40.196 1 103.73 ? C27 A1AE9 407 A 1 HETATM 22 C C29 A1AE9 . . . J 4 -19.913 40.362 -38.239 1 94.99 ? C29 A1AE9 407 A 1 HETATM 23 C C3 A1AE9 . . . J 4 -21.735 40.217 -40.484 1 122.73 ? C3 A1AE9 407 A 1 HETATM 24 C C30 A1AE9 . . . J 4 -19.016 39.504 -37.606 1 94.8 ? C30 A1AE9 407 A 1 HETATM 25 C C31 A1AE9 . . . J 4 -19.322 39.049 -36.331 1 89.43 ? C31 A1AE9 407 A 1 HETATM 26 C C32 A1AE9 . . . J 4 -20.489 39.44 -35.704 1 74.68 ? C32 A1AE9 407 A 1 HETATM 27 C C33 A1AE9 . . . J 4 -21.364 40.287 -36.339 1 83.91 ? C33 A1AE9 407 A 1 HETATM 28 C C34 A1AE9 . . . J 4 -21.086 40.755 -37.609 1 89.87 ? C34 A1AE9 407 A 1 HETATM 29 C C35 A1AE9 . . . J 4 -17.749 39.106 -38.315 1 97.66 ? C35 A1AE9 407 A 1 HETATM 30 C C36 A1AE9 . . . J 4 -17.21 40.159 -39.267 1 92.82 ? C36 A1AE9 407 A 1 HETATM 31 C C37 A1AE9 . . . J 4 -18.179 41.28 -39.586 1 108.63 ? C37 A1AE9 407 A 1 HETATM 32 N N10 A1AE9 . . . J 4 -27.24 36.876 -40.401 1 94.71 ? N10 A1AE9 407 A 1 HETATM 33 N N21 A1AE9 . . . J 4 -28.521 40.447 -39.085 1 89.85 ? N21 A1AE9 407 A 1 HETATM 34 N N28 A1AE9 . . . J 4 -19.571 40.819 -39.512 1 111.85 ? N28 A1AE9 407 A 1 HETATM 35 N N9 A1AE9 . . . J 4 -27.775 38.09 -40.101 1 102.57 ? N9 A1AE9 407 A 1 HETATM 36 O O1 A1AE9 . . . J 4 -20.075 41.424 -41.619 1 101.63 ? O1 A1AE9 407 A 1 HETATM 37 O O24 A1AE9 . . . J 4 -27.884 41.624 -37.336 1 91.55 ? O24 A1AE9 407 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 37 #