data_8W3B # _model_server_result.job_id rUEbPByAaDMBN3EwvX6QUg _model_server_result.datetime_utc '2025-01-09 04:35:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 8W3B # _exptl.entry_id 8W3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.448 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W3B _cell.length_a 81.315 _cell.length_b 131.398 _cell.length_c 134.111 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,L 1 1 B,G,H,M 2 1 C,I,J,N 3 1 D,K,O 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 47 A CYS 491 1_555 E C0V TZ0 . A TZ0 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale2 B SG CYS 47 B CYS 491 1_555 G C0V TZ0 . B TZ0 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale3 C SG CYS 47 C CYS 491 1_555 I C0V TZ0 . C TZ0 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale4 D SG CYS 47 D CYS 491 1_555 K C0V TZ0 . D TZ0 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C22 H22 N6 O3' _chem_comp.formula_weight 418.448 _chem_comp.id TZ0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C0N O01 TZ0 sing 362 n n O01 C0E TZ0 sing 363 n n C0E C0C TZ0 doub 364 n y C0E C0O TZ0 sing 365 n y C0C C0D TZ0 sing 366 n y C0O C0J TZ0 doub 367 n y C0U O02 TZ0 sing 368 n n C0D O02 TZ0 sing 369 n n C0D C0R TZ0 doub 370 n y O03 C0P TZ0 doub 371 n n C0J C0R TZ0 sing 372 n y C0J C0S TZ0 sing 373 n n C0T N07 TZ0 sing 374 n n C0T C0Q TZ0 sing 375 n n C0S C0H TZ0 trip 376 n n C0P N07 TZ0 sing 377 n n C0P C0M TZ0 sing 378 n n C0V C0M TZ0 doub 379 n n C0H C0G TZ0 sing 380 n n N07 C0I TZ0 sing 381 n n C0Q C0K TZ0 sing 382 n n N09 C0G TZ0 doub 383 n y N09 N04 TZ0 sing 384 n y C0G C0A TZ0 sing 385 n y N04 C0K TZ0 sing 386 n n N04 C0B TZ0 sing 387 n y C0K C0I TZ0 sing 388 n n C0A C0B TZ0 doub 389 n y C0A C0F TZ0 sing 390 n y N05 C0F TZ0 sing 391 n n C0B N08 TZ0 sing 392 n y C0F N06 TZ0 doub 393 n y N08 C0L TZ0 doub 394 n y N06 C0L TZ0 sing 395 n y C0N H1 TZ0 sing 396 n n C0N H2 TZ0 sing 397 n n C0N H3 TZ0 sing 398 n n C0O H4 TZ0 sing 399 n n C0C H5 TZ0 sing 400 n n C0U H6 TZ0 sing 401 n n C0U H7 TZ0 sing 402 n n C0U H8 TZ0 sing 403 n n C0R H9 TZ0 sing 404 n n N05 H10 TZ0 sing 405 n n N05 H11 TZ0 sing 406 n n C0L H12 TZ0 sing 407 n n C0K H13 TZ0 sing 408 n n C0I H14 TZ0 sing 409 n n C0I H15 TZ0 sing 410 n n C0Q H16 TZ0 sing 411 n n C0Q H17 TZ0 sing 412 n n C0T H18 TZ0 sing 413 n n C0T H19 TZ0 sing 414 n n C0M H20 TZ0 sing 415 n n C0V H21 TZ0 sing 416 n n C0V H22 TZ0 sing 417 n n # _atom_sites.entry_id 8W3B _atom_sites.fract_transf_matrix[1][1] 0.012298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TZ0 A 1 801 801 TZ0 DRG . F 3 SO4 A 1 802 1 SO4 SO4 . G 2 TZ0 B 1 801 801 TZ0 DRG . H 3 SO4 B 1 802 2 SO4 SO4 . I 2 TZ0 C 1 801 801 TZ0 DRG . J 3 SO4 C 1 802 3 SO4 SO4 . K 2 TZ0 D 1 801 801 TZ0 DRG . L 4 HOH A 1 901 50 HOH HOH . L 4 HOH A 2 902 1 HOH HOH . L 4 HOH A 3 903 5 HOH HOH . L 4 HOH A 4 904 17 HOH HOH . L 4 HOH A 5 905 111 HOH HOH . L 4 HOH A 6 906 24 HOH HOH . L 4 HOH A 7 907 86 HOH HOH . L 4 HOH A 8 908 16 HOH HOH . L 4 HOH A 9 909 101 HOH HOH . L 4 HOH A 10 910 136 HOH HOH . L 4 HOH A 11 911 103 HOH HOH . L 4 HOH A 12 912 14 HOH HOH . L 4 HOH A 13 913 49 HOH HOH . L 4 HOH A 14 914 12 HOH HOH . L 4 HOH A 15 915 99 HOH HOH . L 4 HOH A 16 916 93 HOH HOH . L 4 HOH A 17 917 32 HOH HOH . L 4 HOH A 18 918 38 HOH HOH . L 4 HOH A 19 919 45 HOH HOH . L 4 HOH A 20 920 72 HOH HOH . L 4 HOH A 21 921 92 HOH HOH . L 4 HOH A 22 922 13 HOH HOH . L 4 HOH A 23 923 70 HOH HOH . L 4 HOH A 24 924 147 HOH HOH . L 4 HOH A 25 925 132 HOH HOH . L 4 HOH A 26 926 60 HOH HOH . L 4 HOH A 27 927 145 HOH HOH . L 4 HOH A 28 928 96 HOH HOH . L 4 HOH A 29 929 63 HOH HOH . L 4 HOH A 30 930 134 HOH HOH . L 4 HOH A 31 931 122 HOH HOH . L 4 HOH A 32 932 119 HOH HOH . L 4 HOH A 33 933 2 HOH HOH . L 4 HOH A 34 934 28 HOH HOH . L 4 HOH A 35 935 121 HOH HOH . L 4 HOH A 36 936 105 HOH HOH . L 4 HOH A 37 937 149 HOH HOH . L 4 HOH A 38 938 82 HOH HOH . L 4 HOH A 39 939 77 HOH HOH . M 4 HOH B 1 901 29 HOH HOH . M 4 HOH B 2 902 89 HOH HOH . M 4 HOH B 3 903 81 HOH HOH . M 4 HOH B 4 904 78 HOH HOH . M 4 HOH B 5 905 95 HOH HOH . M 4 HOH B 6 906 51 HOH HOH . M 4 HOH B 7 907 143 HOH HOH . M 4 HOH B 8 908 144 HOH HOH . M 4 HOH B 9 909 114 HOH HOH . M 4 HOH B 10 910 97 HOH HOH . M 4 HOH B 11 911 35 HOH HOH . M 4 HOH B 12 912 39 HOH HOH . M 4 HOH B 13 913 26 HOH HOH . M 4 HOH B 14 914 102 HOH HOH . M 4 HOH B 15 915 4 HOH HOH . M 4 HOH B 16 916 66 HOH HOH . M 4 HOH B 17 917 146 HOH HOH . M 4 HOH B 18 918 131 HOH HOH . M 4 HOH B 19 919 141 HOH HOH . M 4 HOH B 20 920 27 HOH HOH . M 4 HOH B 21 921 33 HOH HOH . M 4 HOH B 22 922 47 HOH HOH . M 4 HOH B 23 923 53 HOH HOH . M 4 HOH B 24 924 87 HOH HOH . M 4 HOH B 25 925 142 HOH HOH . M 4 HOH B 26 926 46 HOH HOH . M 4 HOH B 27 927 68 HOH HOH . M 4 HOH B 28 928 59 HOH HOH . M 4 HOH B 29 929 108 HOH HOH . M 4 HOH B 30 930 58 HOH HOH . M 4 HOH B 31 931 25 HOH HOH . M 4 HOH B 32 932 84 HOH HOH . M 4 HOH B 33 933 104 HOH HOH . M 4 HOH B 34 934 31 HOH HOH . M 4 HOH B 35 935 91 HOH HOH . N 4 HOH C 1 901 7 HOH HOH . N 4 HOH C 2 902 135 HOH HOH . N 4 HOH C 3 903 113 HOH HOH . N 4 HOH C 4 904 15 HOH HOH . N 4 HOH C 5 905 11 HOH HOH . N 4 HOH C 6 906 148 HOH HOH . N 4 HOH C 7 907 18 HOH HOH . N 4 HOH C 8 908 56 HOH HOH . N 4 HOH C 9 909 62 HOH HOH . N 4 HOH C 10 910 3 HOH HOH . N 4 HOH C 11 911 120 HOH HOH . N 4 HOH C 12 912 112 HOH HOH . N 4 HOH C 13 913 75 HOH HOH . N 4 HOH C 14 914 76 HOH HOH . N 4 HOH C 15 915 90 HOH HOH . N 4 HOH C 16 916 21 HOH HOH . N 4 HOH C 17 917 10 HOH HOH . N 4 HOH C 18 918 34 HOH HOH . N 4 HOH C 19 919 130 HOH HOH . N 4 HOH C 20 920 41 HOH HOH . N 4 HOH C 21 921 44 HOH HOH . N 4 HOH C 22 922 6 HOH HOH . N 4 HOH C 23 923 20 HOH HOH . N 4 HOH C 24 924 88 HOH HOH . N 4 HOH C 25 925 64 HOH HOH . N 4 HOH C 26 926 73 HOH HOH . N 4 HOH C 27 927 8 HOH HOH . N 4 HOH C 28 928 19 HOH HOH . N 4 HOH C 29 929 42 HOH HOH . N 4 HOH C 30 930 107 HOH HOH . N 4 HOH C 31 931 9 HOH HOH . N 4 HOH C 32 932 69 HOH HOH . N 4 HOH C 33 933 85 HOH HOH . N 4 HOH C 34 934 115 HOH HOH . N 4 HOH C 35 935 124 HOH HOH . O 4 HOH D 1 901 83 HOH HOH . O 4 HOH D 2 902 55 HOH HOH . O 4 HOH D 3 903 43 HOH HOH . O 4 HOH D 4 904 110 HOH HOH . O 4 HOH D 5 905 118 HOH HOH . O 4 HOH D 6 906 94 HOH HOH . O 4 HOH D 7 907 106 HOH HOH . O 4 HOH D 8 908 100 HOH HOH . O 4 HOH D 9 909 61 HOH HOH . O 4 HOH D 10 910 127 HOH HOH . O 4 HOH D 11 911 74 HOH HOH . O 4 HOH D 12 912 37 HOH HOH . O 4 HOH D 13 913 126 HOH HOH . O 4 HOH D 14 914 22 HOH HOH . O 4 HOH D 15 915 140 HOH HOH . O 4 HOH D 16 916 71 HOH HOH . O 4 HOH D 17 917 67 HOH HOH . O 4 HOH D 18 918 138 HOH HOH . O 4 HOH D 19 919 80 HOH HOH . O 4 HOH D 20 920 40 HOH HOH . O 4 HOH D 21 921 137 HOH HOH . O 4 HOH D 22 922 129 HOH HOH . O 4 HOH D 23 923 36 HOH HOH . O 4 HOH D 24 924 54 HOH HOH . O 4 HOH D 25 925 52 HOH HOH . O 4 HOH D 26 926 98 HOH HOH . O 4 HOH D 27 927 79 HOH HOH . O 4 HOH D 28 928 128 HOH HOH . O 4 HOH D 29 929 116 HOH HOH . O 4 HOH D 30 930 30 HOH HOH . O 4 HOH D 31 931 48 HOH HOH . O 4 HOH D 32 932 109 HOH HOH . O 4 HOH D 33 933 139 HOH HOH . O 4 HOH D 34 934 133 HOH HOH . O 4 HOH D 35 935 65 HOH HOH . O 4 HOH D 36 936 117 HOH HOH . O 4 HOH D 37 937 23 HOH HOH . O 4 HOH D 38 938 125 HOH HOH . O 4 HOH D 39 939 123 HOH HOH . O 4 HOH D 40 940 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C0N TZ0 . . . I 2 3.743 -44.064 -51.723 1 27.77 ? C0N TZ0 801 C 1 HETATM 2 O O01 TZ0 . . . I 2 2.523 -43.663 -52.355 1 29.23 ? O01 TZ0 801 C 1 HETATM 3 C C0E TZ0 . . . I 2 1.735 -44.692 -52.801 1 27.68 ? C0E TZ0 801 C 1 HETATM 4 C C0O TZ0 . . . I 2 0.41 -44.416 -53.131 1 27.35 ? C0O TZ0 801 C 1 HETATM 5 C C0C TZ0 . . . I 2 2.211 -46 -52.939 1 26.76 ? C0C TZ0 801 C 1 HETATM 6 C C0D TZ0 . . . I 2 1.371 -47.02 -53.398 1 26.01 ? C0D TZ0 801 C 1 HETATM 7 O O02 TZ0 . . . I 2 1.794 -48.31 -53.54 1 27.4 ? O02 TZ0 801 C 1 HETATM 8 C C0U TZ0 . . . I 2 3.204 -48.514 -53.364 1 29.16 ? C0U TZ0 801 C 1 HETATM 9 C C0R TZ0 . . . I 2 0.048 -46.727 -53.722 1 26.86 ? C0R TZ0 801 C 1 HETATM 10 C C0J TZ0 . . . I 2 -0.432 -45.427 -53.59 1 27.24 ? C0J TZ0 801 C 1 HETATM 11 C C0S TZ0 . . . I 2 -1.769 -45.119 -53.921 1 27.09 ? C0S TZ0 801 C 1 HETATM 12 C C0H TZ0 . . . I 2 -2.861 -44.862 -54.18 1 27.86 ? C0H TZ0 801 C 1 HETATM 13 C C0G TZ0 . . . I 2 -4.204 -44.541 -54.516 1 28.69 ? C0G TZ0 801 C 1 HETATM 14 N N09 TZ0 . . . I 2 -4.552 -44.122 -55.722 1 29.75 ? N09 TZ0 801 C 1 HETATM 15 C C0A TZ0 . . . I 2 -5.271 -44.602 -53.719 1 28.98 ? C0A TZ0 801 C 1 HETATM 16 C C0F TZ0 . . . I 2 -5.451 -44.949 -52.431 1 29.64 ? C0F TZ0 801 C 1 HETATM 17 N N05 TZ0 . . . I 2 -4.382 -45.33 -51.734 1 28.29 ? N05 TZ0 801 C 1 HETATM 18 N N06 TZ0 . . . I 2 -6.663 -44.925 -51.854 1 29.76 ? N06 TZ0 801 C 1 HETATM 19 C C0L TZ0 . . . I 2 -7.765 -44.523 -52.616 1 31.18 ? C0L TZ0 801 C 1 HETATM 20 N N08 TZ0 . . . I 2 -7.55 -44.159 -53.953 1 30.23 ? N08 TZ0 801 C 1 HETATM 21 C C0B TZ0 . . . I 2 -6.312 -44.208 -54.469 1 29.14 ? C0B TZ0 801 C 1 HETATM 22 N N04 TZ0 . . . I 2 -5.873 -43.913 -55.697 1 31.12 ? N04 TZ0 801 C 1 HETATM 23 C C0K TZ0 . . . I 2 -6.704 -43.43 -56.848 1 31.4 ? C0K TZ0 801 C 1 HETATM 24 C C0I TZ0 . . . I 2 -5.882 -43.321 -58.13 1 31.91 ? C0I TZ0 801 C 1 HETATM 25 C C0Q TZ0 . . . I 2 -7.253 -42.03 -56.567 1 31.67 ? C0Q TZ0 801 C 1 HETATM 26 C C0T TZ0 . . . I 2 -6.732 -41.095 -57.65 1 31.84 ? C0T TZ0 801 C 1 HETATM 27 N N07 TZ0 . . . I 2 -6.074 -41.949 -58.67 1 32.82 ? N07 TZ0 801 C 1 HETATM 28 C C0P TZ0 . . . I 2 -5.646 -41.615 -59.9 1 34.35 ? C0P TZ0 801 C 1 HETATM 29 O O03 TZ0 . . . I 2 -5.094 -42.412 -60.66 1 37.77 ? O03 TZ0 801 C 1 HETATM 30 C C0M TZ0 . . . I 2 -5.898 -40.164 -60.338 1 33.47 ? C0M TZ0 801 C 1 HETATM 31 C C0V TZ0 . . . I 2 -4.608 -39.537 -60.879 1 32.51 ? C0V TZ0 801 C 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #