data_8W3E # _model_server_result.job_id RePGQyJDCmHfQ-3o4adxPw _model_server_result.datetime_utc '2025-08-21 02:43:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8W3E # _exptl.entry_id 8W3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W3E _cell.length_a 170.033 _cell.length_b 170.033 _cell.length_c 170.033 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_663 z+1,x+1,y-2 0 0 1 1 0 0 0 1 0 170.033 170.033 -340.066 3 'crystal symmetry operation' 9_474 y-1,z+2,x-1 0 1 0 0 0 1 1 0 0 -170.033 340.066 -170.033 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 404 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 177 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 120 F CYS 155 1_555 A SG CYS 255 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 A SG CYS 278 F CYS 313 1_555 A SG CYS 308 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf5 A SG CYS 287 F CYS 322 1_555 A SG CYS 298 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 A SG CYS 323 F CYS 358 1_555 A SG CYS 332 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf7 A SG CYS 347 F CYS 382 1_555 A SG CYS 358 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf8 A SG CYS 381 F CYS 416 1_555 A SG CYS 387 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? covale ? covale1 A ND2 ASN 465 F ASN 500 1_555 D C1 NAG . F NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8W3E _atom_sites.fract_transf_matrix[1][1] 0.005881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG F 1 601 544 PEG PEG . C 3 EDO F 1 602 545 EDO EDO . D 4 NAG F 1 603 546 NAG NAG . E 5 HOH F 1 701 38 HOH HOH . E 5 HOH F 2 702 30 HOH HOH . E 5 HOH F 3 703 116 HOH HOH . E 5 HOH F 4 704 60 HOH HOH . E 5 HOH F 5 705 23 HOH HOH . E 5 HOH F 6 706 66 HOH HOH . E 5 HOH F 7 707 80 HOH HOH . E 5 HOH F 8 708 85 HOH HOH . E 5 HOH F 9 709 111 HOH HOH . E 5 HOH F 10 710 39 HOH HOH . E 5 HOH F 11 711 34 HOH HOH . E 5 HOH F 12 712 1 HOH HOH . E 5 HOH F 13 713 89 HOH HOH . E 5 HOH F 14 714 49 HOH HOH . E 5 HOH F 15 715 99 HOH HOH . E 5 HOH F 16 716 29 HOH HOH . E 5 HOH F 17 717 51 HOH HOH . E 5 HOH F 18 718 41 HOH HOH . E 5 HOH F 19 719 102 HOH HOH . E 5 HOH F 20 720 4 HOH HOH . E 5 HOH F 21 721 72 HOH HOH . E 5 HOH F 22 722 48 HOH HOH . E 5 HOH F 23 723 81 HOH HOH . E 5 HOH F 24 724 71 HOH HOH . E 5 HOH F 25 725 10 HOH HOH . E 5 HOH F 26 726 84 HOH HOH . E 5 HOH F 27 727 76 HOH HOH . E 5 HOH F 28 728 64 HOH HOH . E 5 HOH F 29 729 12 HOH HOH . E 5 HOH F 30 730 7 HOH HOH . E 5 HOH F 31 731 54 HOH HOH . E 5 HOH F 32 732 79 HOH HOH . E 5 HOH F 33 733 40 HOH HOH . E 5 HOH F 34 734 35 HOH HOH . E 5 HOH F 35 735 73 HOH HOH . E 5 HOH F 36 736 56 HOH HOH . E 5 HOH F 37 737 33 HOH HOH . E 5 HOH F 38 738 93 HOH HOH . E 5 HOH F 39 739 57 HOH HOH . E 5 HOH F 40 740 63 HOH HOH . E 5 HOH F 41 741 75 HOH HOH . E 5 HOH F 42 742 11 HOH HOH . E 5 HOH F 43 743 18 HOH HOH . E 5 HOH F 44 744 16 HOH HOH . E 5 HOH F 45 745 27 HOH HOH . E 5 HOH F 46 746 24 HOH HOH . E 5 HOH F 47 747 70 HOH HOH . E 5 HOH F 48 748 46 HOH HOH . E 5 HOH F 49 749 5 HOH HOH . E 5 HOH F 50 750 74 HOH HOH . E 5 HOH F 51 751 44 HOH HOH . E 5 HOH F 52 752 37 HOH HOH . E 5 HOH F 53 753 25 HOH HOH . E 5 HOH F 54 754 2 HOH HOH . E 5 HOH F 55 755 21 HOH HOH . E 5 HOH F 56 756 47 HOH HOH . E 5 HOH F 57 757 83 HOH HOH . E 5 HOH F 58 758 8 HOH HOH . E 5 HOH F 59 759 59 HOH HOH . E 5 HOH F 60 760 115 HOH HOH . E 5 HOH F 61 761 62 HOH HOH . E 5 HOH F 62 762 114 HOH HOH . E 5 HOH F 63 763 14 HOH HOH . E 5 HOH F 64 764 112 HOH HOH . E 5 HOH F 65 765 106 HOH HOH . E 5 HOH F 66 766 100 HOH HOH . E 5 HOH F 67 767 3 HOH HOH . E 5 HOH F 68 768 22 HOH HOH . E 5 HOH F 69 769 36 HOH HOH . E 5 HOH F 70 770 101 HOH HOH . E 5 HOH F 71 771 6 HOH HOH . E 5 HOH F 72 772 17 HOH HOH . E 5 HOH F 73 773 108 HOH HOH . E 5 HOH F 74 774 9 HOH HOH . E 5 HOH F 75 775 42 HOH HOH . E 5 HOH F 76 776 69 HOH HOH . E 5 HOH F 77 777 50 HOH HOH . E 5 HOH F 78 778 28 HOH HOH . E 5 HOH F 79 779 31 HOH HOH . E 5 HOH F 80 780 97 HOH HOH . E 5 HOH F 81 781 61 HOH HOH . E 5 HOH F 82 782 87 HOH HOH . E 5 HOH F 83 783 103 HOH HOH . E 5 HOH F 84 784 107 HOH HOH . E 5 HOH F 85 785 52 HOH HOH . E 5 HOH F 86 786 94 HOH HOH . E 5 HOH F 87 787 109 HOH HOH . E 5 HOH F 88 788 91 HOH HOH . E 5 HOH F 89 789 110 HOH HOH . E 5 HOH F 90 790 88 HOH HOH . E 5 HOH F 91 791 58 HOH HOH . E 5 HOH F 92 792 15 HOH HOH . E 5 HOH F 93 793 55 HOH HOH . E 5 HOH F 94 794 98 HOH HOH . E 5 HOH F 95 795 92 HOH HOH . E 5 HOH F 96 796 19 HOH HOH . E 5 HOH F 97 797 20 HOH HOH . E 5 HOH F 98 798 45 HOH HOH . E 5 HOH F 99 799 113 HOH HOH . E 5 HOH F 100 800 43 HOH HOH . E 5 HOH F 101 801 26 HOH HOH . E 5 HOH F 102 802 13 HOH HOH . E 5 HOH F 103 803 90 HOH HOH . E 5 HOH F 104 804 120 HOH HOH . E 5 HOH F 105 805 96 HOH HOH . E 5 HOH F 106 806 95 HOH HOH . E 5 HOH F 107 807 117 HOH HOH . E 5 HOH F 108 808 67 HOH HOH . E 5 HOH F 109 809 118 HOH HOH . E 5 HOH F 110 810 78 HOH HOH . E 5 HOH F 111 811 53 HOH HOH . E 5 HOH F 112 812 104 HOH HOH . E 5 HOH F 113 813 77 HOH HOH . E 5 HOH F 114 814 82 HOH HOH . E 5 HOH F 115 815 68 HOH HOH . E 5 HOH F 116 816 86 HOH HOH . E 5 HOH F 117 817 65 HOH HOH . E 5 HOH F 118 818 105 HOH HOH . E 5 HOH F 119 819 32 HOH HOH . E 5 HOH F 120 820 121 HOH HOH . E 5 HOH F 121 821 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 178.042 355.332 41.186 1 44.21 ? C1 EDO 602 F 1 HETATM 2 O O1 EDO . . . C 3 179.084 356.3 41.411 1 42.98 ? O1 EDO 602 F 1 HETATM 3 C C2 EDO . . . C 3 177.351 355.468 39.824 1 41.74 ? C2 EDO 602 F 1 HETATM 4 O O2 EDO . . . C 3 178.3 355.597 38.758 1 36.5 ? O2 EDO 602 F 1 HETATM 5 H H11 EDO . . . C 3 177.291 355.436 41.972 1 53.15 ? H11 EDO 602 F 1 HETATM 6 H H12 EDO . . . C 3 178.472 354.33 41.263 1 53.15 ? H12 EDO 602 F 1 HETATM 7 H HO1 EDO . . . C 3 179.54 356.095 42.239 1 51.67 ? HO1 EDO 602 F 1 HETATM 8 H H21 EDO . . . C 3 176.701 356.344 39.836 1 50.19 ? H21 EDO 602 F 1 HETATM 9 H H22 EDO . . . C 3 176.727 354.589 39.647 1 50.19 ? H22 EDO 602 F 1 HETATM 10 H HO2 EDO . . . C 3 177.843 355.526 37.909 1 43.89 ? HO2 EDO 602 F 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #