data_8W3F # _model_server_result.job_id 5nmsAHik424phxeECzfiVg _model_server_result.datetime_utc '2025-08-21 02:54:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8W3F # _exptl.entry_id 8W3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W3F _cell.length_a 168.183 _cell.length_b 168.183 _cell.length_c 168.183 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_663 z+1,x+1,y-2 0 0 1 1 0 0 0 1 0 168.183 168.183 -336.366 3 'crystal symmetry operation' 9_474 y-1,z+2,x-1 0 1 0 0 0 1 1 0 0 -168.183 336.366 -168.183 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 404 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 177 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 120 F CYS 155 1_555 A SG CYS 255 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 278 F CYS 313 1_555 A SG CYS 308 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 A SG CYS 287 F CYS 322 1_555 A SG CYS 298 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 A SG CYS 323 F CYS 358 1_555 A SG CYS 332 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf7 A SG CYS 347 F CYS 382 1_555 A SG CYS 358 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf8 A SG CYS 381 F CYS 416 1_555 A SG CYS 387 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? covale ? covale1 A ND2 ASN 465 F ASN 500 1_555 C C1 NAG . F NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8W3F _atom_sites.fract_transf_matrix[1][1] 0.005946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO F 1 601 540 EDO EDO . C 3 NAG F 1 602 541 NAG NAG . D 4 HOH F 1 701 23 HOH HOH . D 4 HOH F 2 702 16 HOH HOH . D 4 HOH F 3 703 60 HOH HOH . D 4 HOH F 4 704 63 HOH HOH . D 4 HOH F 5 705 9 HOH HOH . D 4 HOH F 6 706 55 HOH HOH . D 4 HOH F 7 707 19 HOH HOH . D 4 HOH F 8 708 21 HOH HOH . D 4 HOH F 9 709 51 HOH HOH . D 4 HOH F 10 710 6 HOH HOH . D 4 HOH F 11 711 20 HOH HOH . D 4 HOH F 12 712 26 HOH HOH . D 4 HOH F 13 713 17 HOH HOH . D 4 HOH F 14 714 46 HOH HOH . D 4 HOH F 15 715 10 HOH HOH . D 4 HOH F 16 716 34 HOH HOH . D 4 HOH F 17 717 27 HOH HOH . D 4 HOH F 18 718 15 HOH HOH . D 4 HOH F 19 719 2 HOH HOH . D 4 HOH F 20 720 38 HOH HOH . D 4 HOH F 21 721 8 HOH HOH . D 4 HOH F 22 722 33 HOH HOH . D 4 HOH F 23 723 57 HOH HOH . D 4 HOH F 24 724 59 HOH HOH . D 4 HOH F 25 725 53 HOH HOH . D 4 HOH F 26 726 54 HOH HOH . D 4 HOH F 27 727 14 HOH HOH . D 4 HOH F 28 728 47 HOH HOH . D 4 HOH F 29 729 12 HOH HOH . D 4 HOH F 30 730 1 HOH HOH . D 4 HOH F 31 731 43 HOH HOH . D 4 HOH F 32 732 24 HOH HOH . D 4 HOH F 33 733 30 HOH HOH . D 4 HOH F 34 734 22 HOH HOH . D 4 HOH F 35 735 3 HOH HOH . D 4 HOH F 36 736 28 HOH HOH . D 4 HOH F 37 737 5 HOH HOH . D 4 HOH F 38 738 37 HOH HOH . D 4 HOH F 39 739 42 HOH HOH . D 4 HOH F 40 740 7 HOH HOH . D 4 HOH F 41 741 25 HOH HOH . D 4 HOH F 42 742 48 HOH HOH . D 4 HOH F 43 743 56 HOH HOH . D 4 HOH F 44 744 36 HOH HOH . D 4 HOH F 45 745 44 HOH HOH . D 4 HOH F 46 746 45 HOH HOH . D 4 HOH F 47 747 52 HOH HOH . D 4 HOH F 48 748 41 HOH HOH . D 4 HOH F 49 749 39 HOH HOH . D 4 HOH F 50 750 4 HOH HOH . D 4 HOH F 51 751 32 HOH HOH . D 4 HOH F 52 752 18 HOH HOH . D 4 HOH F 53 753 49 HOH HOH . D 4 HOH F 54 754 35 HOH HOH . D 4 HOH F 55 755 31 HOH HOH . D 4 HOH F 56 756 62 HOH HOH . D 4 HOH F 57 757 11 HOH HOH . D 4 HOH F 58 758 50 HOH HOH . D 4 HOH F 59 759 61 HOH HOH . D 4 HOH F 60 760 58 HOH HOH . D 4 HOH F 61 761 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 187.282 335.3 38.549 1 41.14 ? C1 EDO 601 F 1 HETATM 2 O O1 EDO . . . B 2 188.355 335.308 37.573 1 47.56 ? O1 EDO 601 F 1 HETATM 3 C C2 EDO . . . B 2 185.966 334.917 37.831 1 36.76 ? C2 EDO 601 F 1 HETATM 4 O O2 EDO . . . B 2 184.825 334.766 38.7 1 35.19 ? O2 EDO 601 F 1 HETATM 5 H H11 EDO . . . B 2 187.185 336.287 39.008 1 50.01 ? H11 EDO 601 F 1 HETATM 6 H H12 EDO . . . B 2 187.5 334.581 39.341 1 50.01 ? H12 EDO 601 F 1 HETATM 7 H HO1 EDO . . . B 2 189.205 335.38 38.029 1 57.7 ? HO1 EDO 601 F 1 HETATM 8 H H21 EDO . . . B 2 186.123 333.976 37.299 1 44.75 ? H21 EDO 601 F 1 HETATM 9 H H22 EDO . . . B 2 185.738 335.686 37.09 1 44.75 ? H22 EDO 601 F 1 HETATM 10 H HO2 EDO . . . B 2 184.053 334.507 38.178 1 42.86 ? HO2 EDO 601 F 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #