data_8W3F
#
_model_server_result.job_id            RtS15CZlYb5LxbOzNBjUjw 
_model_server_result.datetime_utc      '2025-08-21 02:54:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8W3F 
#
_exptl.entry_id    8W3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W3F 
_cell.length_a            168.183 
_cell.length_b            168.183 
_cell.length_c            168.183 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    'P 4bd 2ab 3' 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_663 z+1,x+1,y-2 0 0 1 1 0 0 0 1 0 168.183 168.183 -336.366 
3 'crystal symmetry operation' 9_474 y-1,z+2,x-1 0 1 0 0 0 1 1 0 0 -168.183 336.366 -168.183 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 404 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 177 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 A SG CYS 120 F CYS 155 1_555 A SG CYS 255 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 A SG CYS 278 F CYS 313 1_555 A SG CYS 308 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf5 A SG CYS 287 F CYS 322 1_555 A SG CYS 298 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 A SG CYS 323 F CYS 358 1_555 A SG CYS 332 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf7 A SG CYS 347 F CYS 382 1_555 A SG CYS 358 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf8 A SG CYS 381 F CYS 416 1_555 A SG CYS 387 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
covale ? covale1 A ND2 ASN 465 F ASN 500 1_555 C C1 NAG . F NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8W3F 
_atom_sites.fract_transf_matrix[1][1]    0.005946 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO F 1 601 540 EDO EDO . 
C 3 NAG F 1 602 541 NAG NAG . 
D 4 HOH F 1 701 23 HOH HOH . 
D 4 HOH F 2 702 16 HOH HOH . 
D 4 HOH F 3 703 60 HOH HOH . 
D 4 HOH F 4 704 63 HOH HOH . 
D 4 HOH F 5 705 9 HOH HOH . 
D 4 HOH F 6 706 55 HOH HOH . 
D 4 HOH F 7 707 19 HOH HOH . 
D 4 HOH F 8 708 21 HOH HOH . 
D 4 HOH F 9 709 51 HOH HOH . 
D 4 HOH F 10 710 6 HOH HOH . 
D 4 HOH F 11 711 20 HOH HOH . 
D 4 HOH F 12 712 26 HOH HOH . 
D 4 HOH F 13 713 17 HOH HOH . 
D 4 HOH F 14 714 46 HOH HOH . 
D 4 HOH F 15 715 10 HOH HOH . 
D 4 HOH F 16 716 34 HOH HOH . 
D 4 HOH F 17 717 27 HOH HOH . 
D 4 HOH F 18 718 15 HOH HOH . 
D 4 HOH F 19 719 2 HOH HOH . 
D 4 HOH F 20 720 38 HOH HOH . 
D 4 HOH F 21 721 8 HOH HOH . 
D 4 HOH F 22 722 33 HOH HOH . 
D 4 HOH F 23 723 57 HOH HOH . 
D 4 HOH F 24 724 59 HOH HOH . 
D 4 HOH F 25 725 53 HOH HOH . 
D 4 HOH F 26 726 54 HOH HOH . 
D 4 HOH F 27 727 14 HOH HOH . 
D 4 HOH F 28 728 47 HOH HOH . 
D 4 HOH F 29 729 12 HOH HOH . 
D 4 HOH F 30 730 1 HOH HOH . 
D 4 HOH F 31 731 43 HOH HOH . 
D 4 HOH F 32 732 24 HOH HOH . 
D 4 HOH F 33 733 30 HOH HOH . 
D 4 HOH F 34 734 22 HOH HOH . 
D 4 HOH F 35 735 3 HOH HOH . 
D 4 HOH F 36 736 28 HOH HOH . 
D 4 HOH F 37 737 5 HOH HOH . 
D 4 HOH F 38 738 37 HOH HOH . 
D 4 HOH F 39 739 42 HOH HOH . 
D 4 HOH F 40 740 7 HOH HOH . 
D 4 HOH F 41 741 25 HOH HOH . 
D 4 HOH F 42 742 48 HOH HOH . 
D 4 HOH F 43 743 56 HOH HOH . 
D 4 HOH F 44 744 36 HOH HOH . 
D 4 HOH F 45 745 44 HOH HOH . 
D 4 HOH F 46 746 45 HOH HOH . 
D 4 HOH F 47 747 52 HOH HOH . 
D 4 HOH F 48 748 41 HOH HOH . 
D 4 HOH F 49 749 39 HOH HOH . 
D 4 HOH F 50 750 4 HOH HOH . 
D 4 HOH F 51 751 32 HOH HOH . 
D 4 HOH F 52 752 18 HOH HOH . 
D 4 HOH F 53 753 49 HOH HOH . 
D 4 HOH F 54 754 35 HOH HOH . 
D 4 HOH F 55 755 31 HOH HOH . 
D 4 HOH F 56 756 62 HOH HOH . 
D 4 HOH F 57 757 11 HOH HOH . 
D 4 HOH F 58 758 50 HOH HOH . 
D 4 HOH F 59 759 61 HOH HOH . 
D 4 HOH F 60 760 58 HOH HOH . 
D 4 HOH F 61 761 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 194.522 359.478 45.245 1 105.1 ? C1 NAG 602 F 1 
HETATM 2 C C2 NAG . . . C 3 194.403 357.951 45.101 1 110.34 ? C2 NAG 602 F 1 
HETATM 3 C C3 NAG . . . C 3 193.621 357.385 46.288 1 112.15 ? C3 NAG 602 F 1 
HETATM 4 C C4 NAG . . . C 3 194.279 357.778 47.61 1 111.53 ? C4 NAG 602 F 1 
HETATM 5 C C5 NAG . . . C 3 194.559 359.287 47.706 1 107.31 ? C5 NAG 602 F 1 
HETATM 6 C C6 NAG . . . C 3 195.481 359.624 48.862 1 95.89 ? C6 NAG 602 F 1 
HETATM 7 C C7 NAG . . . C 3 194.463 356.992 42.817 1 95.8 ? C7 NAG 602 F 1 
HETATM 8 C C8 NAG . . . C 3 193.645 356.616 41.62 1 86.1 ? C8 NAG 602 F 1 
HETATM 9 N N2 NAG . . . C 3 193.79 357.546 43.84 1 103.92 ? N2 NAG 602 F 1 
HETATM 10 O O3 NAG . . . C 3 193.526 355.966 46.181 1 104.47 ? O3 NAG 602 F 1 
HETATM 11 O O4 NAG . . . C 3 193.432 357.405 48.695 1 106.46 ? O4 NAG 602 F 1 
HETATM 12 O O5 NAG . . . C 3 195.19 359.795 46.513 1 108.78 ? O5 NAG 602 F 1 
HETATM 13 O O6 NAG . . . C 3 195.669 361.022 49.04 1 80.76 ? O6 NAG 602 F 1 
HETATM 14 O O7 NAG . . . C 3 195.678 356.814 42.851 1 96.33 ? O7 NAG 602 F 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           530 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#