data_8W3H
#
_model_server_result.job_id            KrAQPF9nHhgG67NX5BsbSA 
_model_server_result.datetime_utc      '2025-08-21 02:35:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w3h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8W3H 
#
_exptl.entry_id    8W3H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W3H 
_cell.length_a            167.933 
_cell.length_b            167.933 
_cell.length_c            167.933 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W3H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    'P 4bd 2ab 3' 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_663 z+1,x+1,y-2 0 0 1 1 0 0 0 1 0 167.933 167.933 -335.866 
3 'crystal symmetry operation' 9_474 y-1,z+2,x-1 0 1 0 0 0 1 1 0 0 -167.933 335.866 -167.933 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 404 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 177 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf3 A SG CYS 114 F CYS 149 1_555 A SG CYS 423 F CYS 458 5_663 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 A SG CYS 120 F CYS 155 1_555 A SG CYS 255 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf5 A SG CYS 278 F CYS 313 1_555 A SG CYS 308 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf6 A SG CYS 287 F CYS 322 1_555 A SG CYS 298 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 323 F CYS 358 1_555 A SG CYS 332 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
disulf ? disulf8 A SG CYS 347 F CYS 382 1_555 A SG CYS 358 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf9 A SG CYS 381 F CYS 416 1_555 A SG CYS 387 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
covale ? covale1 A ND2 ASN 465 F ASN 500 1_555 B C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8W3H 
_atom_sites.fract_transf_matrix[1][1]    0.005955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG F 1 601 510 NAG NAG . 
C 3 EDO F 1 602 512 EDO EDO . 
D 3 EDO F 1 603 513 EDO EDO . 
E 3 EDO F 1 604 514 EDO EDO . 
F 4 HOH F 1 701 136 HOH HOH . 
F 4 HOH F 2 702 24 HOH HOH . 
F 4 HOH F 3 703 156 HOH HOH . 
F 4 HOH F 4 704 22 HOH HOH . 
F 4 HOH F 5 705 254 HOH HOH . 
F 4 HOH F 6 706 102 HOH HOH . 
F 4 HOH F 7 707 11 HOH HOH . 
F 4 HOH F 8 708 91 HOH HOH . 
F 4 HOH F 9 709 118 HOH HOH . 
F 4 HOH F 10 710 101 HOH HOH . 
F 4 HOH F 11 711 34 HOH HOH . 
F 4 HOH F 12 712 146 HOH HOH . 
F 4 HOH F 13 713 89 HOH HOH . 
F 4 HOH F 14 714 71 HOH HOH . 
F 4 HOH F 15 715 35 HOH HOH . 
F 4 HOH F 16 716 92 HOH HOH . 
F 4 HOH F 17 717 46 HOH HOH . 
F 4 HOH F 18 718 23 HOH HOH . 
F 4 HOH F 19 719 109 HOH HOH . 
F 4 HOH F 20 720 115 HOH HOH . 
F 4 HOH F 21 721 58 HOH HOH . 
F 4 HOH F 22 722 1 HOH HOH . 
F 4 HOH F 23 723 18 HOH HOH . 
F 4 HOH F 24 724 144 HOH HOH . 
F 4 HOH F 25 725 229 HOH HOH . 
F 4 HOH F 26 726 51 HOH HOH . 
F 4 HOH F 27 727 30 HOH HOH . 
F 4 HOH F 28 728 148 HOH HOH . 
F 4 HOH F 29 729 152 HOH HOH . 
F 4 HOH F 30 730 217 HOH HOH . 
F 4 HOH F 31 731 8 HOH HOH . 
F 4 HOH F 32 732 192 HOH HOH . 
F 4 HOH F 33 733 66 HOH HOH . 
F 4 HOH F 34 734 42 HOH HOH . 
F 4 HOH F 35 735 163 HOH HOH . 
F 4 HOH F 36 736 84 HOH HOH . 
F 4 HOH F 37 737 45 HOH HOH . 
F 4 HOH F 38 738 13 HOH HOH . 
F 4 HOH F 39 739 193 HOH HOH . 
F 4 HOH F 40 740 50 HOH HOH . 
F 4 HOH F 41 741 72 HOH HOH . 
F 4 HOH F 42 742 114 HOH HOH . 
F 4 HOH F 43 743 87 HOH HOH . 
F 4 HOH F 44 744 224 HOH HOH . 
F 4 HOH F 45 745 77 HOH HOH . 
F 4 HOH F 46 746 36 HOH HOH . 
F 4 HOH F 47 747 63 HOH HOH . 
F 4 HOH F 48 748 123 HOH HOH . 
F 4 HOH F 49 749 141 HOH HOH . 
F 4 HOH F 50 750 19 HOH HOH . 
F 4 HOH F 51 751 15 HOH HOH . 
F 4 HOH F 52 752 80 HOH HOH . 
F 4 HOH F 53 753 173 HOH HOH . 
F 4 HOH F 54 754 147 HOH HOH . 
F 4 HOH F 55 755 153 HOH HOH . 
F 4 HOH F 56 756 28 HOH HOH . 
F 4 HOH F 57 757 154 HOH HOH . 
F 4 HOH F 58 758 47 HOH HOH . 
F 4 HOH F 59 759 4 HOH HOH . 
F 4 HOH F 60 760 116 HOH HOH . 
F 4 HOH F 61 761 43 HOH HOH . 
F 4 HOH F 62 762 99 HOH HOH . 
F 4 HOH F 63 763 2 HOH HOH . 
F 4 HOH F 64 764 37 HOH HOH . 
F 4 HOH F 65 765 65 HOH HOH . 
F 4 HOH F 66 766 189 HOH HOH . 
F 4 HOH F 67 767 29 HOH HOH . 
F 4 HOH F 68 768 20 HOH HOH . 
F 4 HOH F 69 769 39 HOH HOH . 
F 4 HOH F 70 770 151 HOH HOH . 
F 4 HOH F 71 771 98 HOH HOH . 
F 4 HOH F 72 772 79 HOH HOH . 
F 4 HOH F 73 773 149 HOH HOH . 
F 4 HOH F 74 774 40 HOH HOH . 
F 4 HOH F 75 775 202 HOH HOH . 
F 4 HOH F 76 776 21 HOH HOH . 
F 4 HOH F 77 777 167 HOH HOH . 
F 4 HOH F 78 778 186 HOH HOH . 
F 4 HOH F 79 779 107 HOH HOH . 
F 4 HOH F 80 780 169 HOH HOH . 
F 4 HOH F 81 781 27 HOH HOH . 
F 4 HOH F 82 782 5 HOH HOH . 
F 4 HOH F 83 783 41 HOH HOH . 
F 4 HOH F 84 784 75 HOH HOH . 
F 4 HOH F 85 785 33 HOH HOH . 
F 4 HOH F 86 786 14 HOH HOH . 
F 4 HOH F 87 787 54 HOH HOH . 
F 4 HOH F 88 788 64 HOH HOH . 
F 4 HOH F 89 789 7 HOH HOH . 
F 4 HOH F 90 790 60 HOH HOH . 
F 4 HOH F 91 791 9 HOH HOH . 
F 4 HOH F 92 792 105 HOH HOH . 
F 4 HOH F 93 793 197 HOH HOH . 
F 4 HOH F 94 794 82 HOH HOH . 
F 4 HOH F 95 795 83 HOH HOH . 
F 4 HOH F 96 796 73 HOH HOH . 
F 4 HOH F 97 797 179 HOH HOH . 
F 4 HOH F 98 798 138 HOH HOH . 
F 4 HOH F 99 799 112 HOH HOH . 
F 4 HOH F 100 800 93 HOH HOH . 
F 4 HOH F 101 801 126 HOH HOH . 
F 4 HOH F 102 802 32 HOH HOH . 
F 4 HOH F 103 803 113 HOH HOH . 
F 4 HOH F 104 804 44 HOH HOH . 
F 4 HOH F 105 805 96 HOH HOH . 
F 4 HOH F 106 806 48 HOH HOH . 
F 4 HOH F 107 807 31 HOH HOH . 
F 4 HOH F 108 808 176 HOH HOH . 
F 4 HOH F 109 809 131 HOH HOH . 
F 4 HOH F 110 810 137 HOH HOH . 
F 4 HOH F 111 811 68 HOH HOH . 
F 4 HOH F 112 812 3 HOH HOH . 
F 4 HOH F 113 813 164 HOH HOH . 
F 4 HOH F 114 814 133 HOH HOH . 
F 4 HOH F 115 815 16 HOH HOH . 
F 4 HOH F 116 816 174 HOH HOH . 
F 4 HOH F 117 817 121 HOH HOH . 
F 4 HOH F 118 818 26 HOH HOH . 
F 4 HOH F 119 819 53 HOH HOH . 
F 4 HOH F 120 820 122 HOH HOH . 
F 4 HOH F 121 821 139 HOH HOH . 
F 4 HOH F 122 822 110 HOH HOH . 
F 4 HOH F 123 823 142 HOH HOH . 
F 4 HOH F 124 824 61 HOH HOH . 
F 4 HOH F 125 825 81 HOH HOH . 
F 4 HOH F 126 826 238 HOH HOH . 
F 4 HOH F 127 827 188 HOH HOH . 
F 4 HOH F 128 828 203 HOH HOH . 
F 4 HOH F 129 829 200 HOH HOH . 
F 4 HOH F 130 830 17 HOH HOH . 
F 4 HOH F 131 831 25 HOH HOH . 
F 4 HOH F 132 832 117 HOH HOH . 
F 4 HOH F 133 833 184 HOH HOH . 
F 4 HOH F 134 834 150 HOH HOH . 
F 4 HOH F 135 835 108 HOH HOH . 
F 4 HOH F 136 836 56 HOH HOH . 
F 4 HOH F 137 837 12 HOH HOH . 
F 4 HOH F 138 838 132 HOH HOH . 
F 4 HOH F 139 839 162 HOH HOH . 
F 4 HOH F 140 840 160 HOH HOH . 
F 4 HOH F 141 841 62 HOH HOH . 
F 4 HOH F 142 842 168 HOH HOH . 
F 4 HOH F 143 843 100 HOH HOH . 
F 4 HOH F 144 844 124 HOH HOH . 
F 4 HOH F 145 845 57 HOH HOH . 
F 4 HOH F 146 846 70 HOH HOH . 
F 4 HOH F 147 847 140 HOH HOH . 
F 4 HOH F 148 848 257 HOH HOH . 
F 4 HOH F 149 849 88 HOH HOH . 
F 4 HOH F 150 850 38 HOH HOH . 
F 4 HOH F 151 851 216 HOH HOH . 
F 4 HOH F 152 852 111 HOH HOH . 
F 4 HOH F 153 853 76 HOH HOH . 
F 4 HOH F 154 854 155 HOH HOH . 
F 4 HOH F 155 855 208 HOH HOH . 
F 4 HOH F 156 856 244 HOH HOH . 
F 4 HOH F 157 857 49 HOH HOH . 
F 4 HOH F 158 858 264 HOH HOH . 
F 4 HOH F 159 859 166 HOH HOH . 
F 4 HOH F 160 860 246 HOH HOH . 
F 4 HOH F 161 861 120 HOH HOH . 
F 4 HOH F 162 862 234 HOH HOH . 
F 4 HOH F 163 863 127 HOH HOH . 
F 4 HOH F 164 864 10 HOH HOH . 
F 4 HOH F 165 865 199 HOH HOH . 
F 4 HOH F 166 866 157 HOH HOH . 
F 4 HOH F 167 867 222 HOH HOH . 
F 4 HOH F 168 868 129 HOH HOH . 
F 4 HOH F 169 869 225 HOH HOH . 
F 4 HOH F 170 870 211 HOH HOH . 
F 4 HOH F 171 871 85 HOH HOH . 
F 4 HOH F 172 872 228 HOH HOH . 
F 4 HOH F 173 873 69 HOH HOH . 
F 4 HOH F 174 874 218 HOH HOH . 
F 4 HOH F 175 875 191 HOH HOH . 
F 4 HOH F 176 876 128 HOH HOH . 
F 4 HOH F 177 877 239 HOH HOH . 
F 4 HOH F 178 878 206 HOH HOH . 
F 4 HOH F 179 879 178 HOH HOH . 
F 4 HOH F 180 880 135 HOH HOH . 
F 4 HOH F 181 881 196 HOH HOH . 
F 4 HOH F 182 882 86 HOH HOH . 
F 4 HOH F 183 883 97 HOH HOH . 
F 4 HOH F 184 884 177 HOH HOH . 
F 4 HOH F 185 885 143 HOH HOH . 
F 4 HOH F 186 886 180 HOH HOH . 
F 4 HOH F 187 887 183 HOH HOH . 
F 4 HOH F 188 888 67 HOH HOH . 
F 4 HOH F 189 889 161 HOH HOH . 
F 4 HOH F 190 890 158 HOH HOH . 
F 4 HOH F 191 891 94 HOH HOH . 
F 4 HOH F 192 892 185 HOH HOH . 
F 4 HOH F 193 893 95 HOH HOH . 
F 4 HOH F 194 894 175 HOH HOH . 
F 4 HOH F 195 895 59 HOH HOH . 
F 4 HOH F 196 896 198 HOH HOH . 
F 4 HOH F 197 897 207 HOH HOH . 
F 4 HOH F 198 898 52 HOH HOH . 
F 4 HOH F 199 899 182 HOH HOH . 
F 4 HOH F 200 900 237 HOH HOH . 
F 4 HOH F 201 901 6 HOH HOH . 
F 4 HOH F 202 902 249 HOH HOH . 
F 4 HOH F 203 903 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 178.141 343.91 34.459 1 14.51 ? C1 EDO 602 F 1 
HETATM 2 O O1 EDO . . . C 3 179.239 344.646 33.914 1 35.94 ? O1 EDO 602 F 1 
HETATM 3 C C2 EDO . . . C 3 177.368 343.282 33.287 1 25.27 ? C2 EDO 602 F 1 
HETATM 4 O O2 EDO . . . C 3 176.429 342.287 33.704 1 23.4 ? O2 EDO 602 F 1 
HETATM 5 H H11 EDO . . . C 3 177.488 344.572 35.032 1 17.45 ? H11 EDO 602 F 1 
HETATM 6 H H12 EDO . . . C 3 178.504 343.131 35.134 1 17.45 ? H12 EDO 602 F 1 
HETATM 7 H HO1 EDO . . . C 3 179.766 345.018 34.635 1 43.16 ? HO1 EDO 602 F 1 
HETATM 8 H H21 EDO . . . C 3 178.081 342.829 32.595 1 30.35 ? H21 EDO 602 F 1 
HETATM 9 H H22 EDO . . . C 3 176.836 344.07 32.752 1 30.35 ? H22 EDO 602 F 1 
HETATM 10 H HO2 EDO . . . C 3 176.197 341.727 32.951 1 28.11 ? HO2 EDO 602 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#