data_8W3I
#
_model_server_result.job_id            rAX5Ie9b_tWv5mZQYUzQHQ 
_model_server_result.datetime_utc      '2025-08-21 03:03:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w3i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8W3I 
#
_exptl.entry_id    8W3I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W3I 
_cell.length_a            168.999 
_cell.length_b            168.999 
_cell.length_c            168.999 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W3I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    'P 4bd 2ab 3' 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 404 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 177 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 120 F CYS 155 1_555 A SG CYS 255 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 A SG CYS 278 F CYS 313 1_555 A SG CYS 308 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 A SG CYS 287 F CYS 322 1_555 A SG CYS 298 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 A SG CYS 323 F CYS 358 1_555 A SG CYS 332 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf7 A SG CYS 347 F CYS 382 1_555 A SG CYS 358 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
disulf ? disulf8 A SG CYS 381 F CYS 416 1_555 A SG CYS 387 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
covale ? covale1 A ND2 ASN 465 F ASN 500 1_555 B C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8W3I 
_atom_sites.fract_transf_matrix[1][1]    0.005917 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG F 1 601 510 NAG NAG . 
C 3 PEG F 1 602 511 PEG PEG . 
D 4 HOH F 1 701 65 HOH HOH . 
D 4 HOH F 2 702 48 HOH HOH . 
D 4 HOH F 3 703 67 HOH HOH . 
D 4 HOH F 4 704 34 HOH HOH . 
D 4 HOH F 5 705 69 HOH HOH . 
D 4 HOH F 6 706 80 HOH HOH . 
D 4 HOH F 7 707 42 HOH HOH . 
D 4 HOH F 8 708 6 HOH HOH . 
D 4 HOH F 9 709 20 HOH HOH . 
D 4 HOH F 10 710 16 HOH HOH . 
D 4 HOH F 11 711 28 HOH HOH . 
D 4 HOH F 12 712 49 HOH HOH . 
D 4 HOH F 13 713 11 HOH HOH . 
D 4 HOH F 14 714 83 HOH HOH . 
D 4 HOH F 15 715 51 HOH HOH . 
D 4 HOH F 16 716 63 HOH HOH . 
D 4 HOH F 17 717 64 HOH HOH . 
D 4 HOH F 18 718 44 HOH HOH . 
D 4 HOH F 19 719 21 HOH HOH . 
D 4 HOH F 20 720 18 HOH HOH . 
D 4 HOH F 21 721 61 HOH HOH . 
D 4 HOH F 22 722 82 HOH HOH . 
D 4 HOH F 23 723 25 HOH HOH . 
D 4 HOH F 24 724 31 HOH HOH . 
D 4 HOH F 25 725 33 HOH HOH . 
D 4 HOH F 26 726 74 HOH HOH . 
D 4 HOH F 27 727 29 HOH HOH . 
D 4 HOH F 28 728 1 HOH HOH . 
D 4 HOH F 29 729 68 HOH HOH . 
D 4 HOH F 30 730 73 HOH HOH . 
D 4 HOH F 31 731 41 HOH HOH . 
D 4 HOH F 32 732 39 HOH HOH . 
D 4 HOH F 33 733 46 HOH HOH . 
D 4 HOH F 34 734 72 HOH HOH . 
D 4 HOH F 35 735 2 HOH HOH . 
D 4 HOH F 36 736 54 HOH HOH . 
D 4 HOH F 37 737 79 HOH HOH . 
D 4 HOH F 38 738 37 HOH HOH . 
D 4 HOH F 39 739 55 HOH HOH . 
D 4 HOH F 40 740 30 HOH HOH . 
D 4 HOH F 41 741 3 HOH HOH . 
D 4 HOH F 42 742 17 HOH HOH . 
D 4 HOH F 43 743 59 HOH HOH . 
D 4 HOH F 44 744 27 HOH HOH . 
D 4 HOH F 45 745 50 HOH HOH . 
D 4 HOH F 46 746 23 HOH HOH . 
D 4 HOH F 47 747 7 HOH HOH . 
D 4 HOH F 48 748 57 HOH HOH . 
D 4 HOH F 49 749 53 HOH HOH . 
D 4 HOH F 50 750 26 HOH HOH . 
D 4 HOH F 51 751 32 HOH HOH . 
D 4 HOH F 52 752 56 HOH HOH . 
D 4 HOH F 53 753 12 HOH HOH . 
D 4 HOH F 54 754 40 HOH HOH . 
D 4 HOH F 55 755 66 HOH HOH . 
D 4 HOH F 56 756 24 HOH HOH . 
D 4 HOH F 57 757 71 HOH HOH . 
D 4 HOH F 58 758 22 HOH HOH . 
D 4 HOH F 59 759 4 HOH HOH . 
D 4 HOH F 60 760 43 HOH HOH . 
D 4 HOH F 61 761 5 HOH HOH . 
D 4 HOH F 62 762 10 HOH HOH . 
D 4 HOH F 63 763 76 HOH HOH . 
D 4 HOH F 64 764 38 HOH HOH . 
D 4 HOH F 65 765 45 HOH HOH . 
D 4 HOH F 66 766 19 HOH HOH . 
D 4 HOH F 67 767 13 HOH HOH . 
D 4 HOH F 68 768 9 HOH HOH . 
D 4 HOH F 69 769 15 HOH HOH . 
D 4 HOH F 70 770 8 HOH HOH . 
D 4 HOH F 71 771 60 HOH HOH . 
D 4 HOH F 72 772 14 HOH HOH . 
D 4 HOH F 73 773 70 HOH HOH . 
D 4 HOH F 74 774 77 HOH HOH . 
D 4 HOH F 75 775 62 HOH HOH . 
D 4 HOH F 76 776 52 HOH HOH . 
D 4 HOH F 77 777 36 HOH HOH . 
D 4 HOH F 78 778 58 HOH HOH . 
D 4 HOH F 79 779 81 HOH HOH . 
D 4 HOH F 80 780 47 HOH HOH . 
D 4 HOH F 81 781 75 HOH HOH . 
D 4 HOH F 82 782 35 HOH HOH . 
D 4 HOH F 83 783 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 26.277 23.467 45.3 1 98.74 ? C1 NAG 601 F 1 
HETATM 2 C C2 NAG . . . B 2 26.229 21.926 45.417 1 99.59 ? C2 NAG 601 F 1 
HETATM 3 C C3 NAG . . . B 2 25.651 21.52 46.781 1 103.35 ? C3 NAG 601 F 1 
HETATM 4 C C4 NAG . . . B 2 26.481 22.12 47.913 1 112.07 ? C4 NAG 601 F 1 
HETATM 5 C C5 NAG . . . B 2 26.486 23.645 47.797 1 110.22 ? C5 NAG 601 F 1 
HETATM 6 C C6 NAG . . . B 2 27.323 24.342 48.862 1 102.56 ? C6 NAG 601 F 1 
HETATM 7 C C7 NAG . . . B 2 26.016 20.863 43.183 1 90.66 ? C7 NAG 601 F 1 
HETATM 8 C C8 NAG . . . B 2 25.068 20.226 42.211 1 79.34 ? C8 NAG 601 F 1 
HETATM 9 N N2 NAG . . . B 2 25.474 21.304 44.333 1 98.54 ? N2 NAG 601 F 1 
HETATM 10 O O3 NAG . . . B 2 25.593 20.102 46.896 1 103.43 ? O3 NAG 601 F 1 
HETATM 11 O O4 NAG . . . B 2 25.963 21.734 49.184 1 110.56 ? O4 NAG 601 F 1 
HETATM 12 O O5 NAG . . . B 2 26.985 24.047 46.505 1 106.41 ? O5 NAG 601 F 1 
HETATM 13 O O6 NAG . . . B 2 28.682 23.923 48.904 1 93.25 ? O6 NAG 601 F 1 
HETATM 14 O O7 NAG . . . B 2 27.213 20.982 42.932 1 93.27 ? O7 NAG 601 F 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#