data_8W3K # _model_server_result.job_id wPzVTyNGv6ljmCPPlyeAZA _model_server_result.datetime_utc '2025-08-21 02:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8W3K # _exptl.entry_id 8W3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W3K _cell.length_a 168.749 _cell.length_b 168.749 _cell.length_c 168.749 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_663 z+1,x+1,y-2 0 0 1 1 0 0 0 1 0 168.749 168.749 -337.498 3 'crystal symmetry operation' 9_474 y-1,z+2,x-1 0 1 0 0 0 1 1 0 0 -168.749 337.498 -168.749 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 404 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 177 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 114 F CYS 149 1_555 A SG CYS 423 F CYS 458 5_663 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 120 F CYS 155 1_555 A SG CYS 255 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 278 F CYS 313 1_555 A SG CYS 308 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 287 F CYS 322 1_555 A SG CYS 298 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 A SG CYS 323 F CYS 358 1_555 A SG CYS 332 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf8 A SG CYS 347 F CYS 382 1_555 A SG CYS 358 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 A SG CYS 381 F CYS 416 1_555 A SG CYS 387 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A ND2 ASN 465 F ASN 500 1_555 F C1 NAG . F NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8W3K _atom_sites.fract_transf_matrix[1][1] 0.005926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO F 1 601 540 EDO EDO . C 2 EDO F 1 602 541 EDO EDO . D 2 EDO F 1 603 542 EDO EDO . E 2 EDO F 1 604 543 EDO EDO . F 3 NAG F 1 605 544 NAG NAG . G 4 HOH F 1 701 58 HOH HOH . G 4 HOH F 2 702 53 HOH HOH . G 4 HOH F 3 703 56 HOH HOH . G 4 HOH F 4 704 100 HOH HOH . G 4 HOH F 5 705 29 HOH HOH . G 4 HOH F 6 706 26 HOH HOH . G 4 HOH F 7 707 32 HOH HOH . G 4 HOH F 8 708 12 HOH HOH . G 4 HOH F 9 709 24 HOH HOH . G 4 HOH F 10 710 6 HOH HOH . G 4 HOH F 11 711 38 HOH HOH . G 4 HOH F 12 712 35 HOH HOH . G 4 HOH F 13 713 19 HOH HOH . G 4 HOH F 14 714 31 HOH HOH . G 4 HOH F 15 715 86 HOH HOH . G 4 HOH F 16 716 67 HOH HOH . G 4 HOH F 17 717 33 HOH HOH . G 4 HOH F 18 718 46 HOH HOH . G 4 HOH F 19 719 41 HOH HOH . G 4 HOH F 20 720 51 HOH HOH . G 4 HOH F 21 721 15 HOH HOH . G 4 HOH F 22 722 28 HOH HOH . G 4 HOH F 23 723 7 HOH HOH . G 4 HOH F 24 724 14 HOH HOH . G 4 HOH F 25 725 20 HOH HOH . G 4 HOH F 26 726 55 HOH HOH . G 4 HOH F 27 727 50 HOH HOH . G 4 HOH F 28 728 3 HOH HOH . G 4 HOH F 29 729 16 HOH HOH . G 4 HOH F 30 730 47 HOH HOH . G 4 HOH F 31 731 49 HOH HOH . G 4 HOH F 32 732 25 HOH HOH . G 4 HOH F 33 733 74 HOH HOH . G 4 HOH F 34 734 61 HOH HOH . G 4 HOH F 35 735 17 HOH HOH . G 4 HOH F 36 736 9 HOH HOH . G 4 HOH F 37 737 23 HOH HOH . G 4 HOH F 38 738 70 HOH HOH . G 4 HOH F 39 739 30 HOH HOH . G 4 HOH F 40 740 81 HOH HOH . G 4 HOH F 41 741 79 HOH HOH . G 4 HOH F 42 742 36 HOH HOH . G 4 HOH F 43 743 85 HOH HOH . G 4 HOH F 44 744 45 HOH HOH . G 4 HOH F 45 745 105 HOH HOH . G 4 HOH F 46 746 1 HOH HOH . G 4 HOH F 47 747 84 HOH HOH . G 4 HOH F 48 748 75 HOH HOH . G 4 HOH F 49 749 2 HOH HOH . G 4 HOH F 50 750 54 HOH HOH . G 4 HOH F 51 751 22 HOH HOH . G 4 HOH F 52 752 102 HOH HOH . G 4 HOH F 53 753 48 HOH HOH . G 4 HOH F 54 754 64 HOH HOH . G 4 HOH F 55 755 5 HOH HOH . G 4 HOH F 56 756 95 HOH HOH . G 4 HOH F 57 757 8 HOH HOH . G 4 HOH F 58 758 72 HOH HOH . G 4 HOH F 59 759 78 HOH HOH . G 4 HOH F 60 760 76 HOH HOH . G 4 HOH F 61 761 71 HOH HOH . G 4 HOH F 62 762 44 HOH HOH . G 4 HOH F 63 763 96 HOH HOH . G 4 HOH F 64 764 106 HOH HOH . G 4 HOH F 65 765 69 HOH HOH . G 4 HOH F 66 766 21 HOH HOH . G 4 HOH F 67 767 87 HOH HOH . G 4 HOH F 68 768 34 HOH HOH . G 4 HOH F 69 769 60 HOH HOH . G 4 HOH F 70 770 18 HOH HOH . G 4 HOH F 71 771 39 HOH HOH . G 4 HOH F 72 772 37 HOH HOH . G 4 HOH F 73 773 77 HOH HOH . G 4 HOH F 74 774 62 HOH HOH . G 4 HOH F 75 775 10 HOH HOH . G 4 HOH F 76 776 68 HOH HOH . G 4 HOH F 77 777 94 HOH HOH . G 4 HOH F 78 778 91 HOH HOH . G 4 HOH F 79 779 97 HOH HOH . G 4 HOH F 80 780 4 HOH HOH . G 4 HOH F 81 781 65 HOH HOH . G 4 HOH F 82 782 59 HOH HOH . G 4 HOH F 83 783 40 HOH HOH . G 4 HOH F 84 784 63 HOH HOH . G 4 HOH F 85 785 43 HOH HOH . G 4 HOH F 86 786 27 HOH HOH . G 4 HOH F 87 787 11 HOH HOH . G 4 HOH F 88 788 99 HOH HOH . G 4 HOH F 89 789 98 HOH HOH . G 4 HOH F 90 790 104 HOH HOH . G 4 HOH F 91 791 80 HOH HOH . G 4 HOH F 92 792 101 HOH HOH . G 4 HOH F 93 793 83 HOH HOH . G 4 HOH F 94 794 93 HOH HOH . G 4 HOH F 95 795 90 HOH HOH . G 4 HOH F 96 796 66 HOH HOH . G 4 HOH F 97 797 89 HOH HOH . G 4 HOH F 98 798 88 HOH HOH . G 4 HOH F 99 799 42 HOH HOH . G 4 HOH F 100 800 13 HOH HOH . G 4 HOH F 101 801 52 HOH HOH . G 4 HOH F 102 802 107 HOH HOH . G 4 HOH F 103 803 57 HOH HOH . G 4 HOH F 104 804 103 HOH HOH . G 4 HOH F 105 805 82 HOH HOH . G 4 HOH F 106 806 92 HOH HOH . G 4 HOH F 107 807 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 182.338 327.303 29.294 1 30.4 ? C1 EDO 602 F 1 HETATM 2 O O1 EDO . . . C 2 183.781 327.219 29.232 1 56.96 ? O1 EDO 602 F 1 HETATM 3 C C2 EDO . . . C 2 181.795 327.794 27.935 1 56.83 ? C2 EDO 602 F 1 HETATM 4 O O2 EDO . . . C 2 182.478 328.937 27.338 1 41.77 ? O2 EDO 602 F 1 HETATM 5 H H11 EDO . . . C 2 182.04 327.994 30.085 1 36.52 ? H11 EDO 602 F 1 HETATM 6 H H12 EDO . . . C 2 181.919 326.322 29.53 1 36.52 ? H12 EDO 602 F 1 HETATM 7 H HO1 EDO . . . C 2 184.168 327.991 29.668 1 68.4 ? HO1 EDO 602 F 1 HETATM 8 H H21 EDO . . . C 2 180.743 328.058 28.067 1 68.24 ? H21 EDO 602 F 1 HETATM 9 H H22 EDO . . . C 2 181.846 326.962 27.23 1 68.24 ? H22 EDO 602 F 1 HETATM 10 H HO2 EDO . . . C 2 182.699 328.736 26.418 1 50.17 ? HO2 EDO 602 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 204 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #