data_8W3M
#
_model_server_result.job_id            Yp5fr_O9X6r510-QGr-0-A 
_model_server_result.datetime_utc      '2025-01-15 17:07:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    8W3M 
#
_exptl.entry_id    8W3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8W3M 
_cell.length_a            56.491 
_cell.length_b            56.491 
_cell.length_c            170.72 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 147 A CYS 147 1_555 B C06 XNV . A XNV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
metalc ? metalc1 A OE2 GLU 45 A GLU 45 1_555 G NA NA . A NA 206 5_564 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? 
metalc ? metalc2 A OD2 ASP 181 A ASP 181 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc3 K NA NA . A NA 210 1_555 M O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? 
metalc ? metalc4 K NA NA . A NA 210 1_555 M O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc5 L NA NA . A NA 211 1_555 M O HOH . A HOH 418 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? 
metalc ? metalc6 L NA NA . A NA 211 1_555 M O HOH . A HOH 426 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8W3M 
_atom_sites.fract_transf_matrix[1][1]    0.017702 
_atom_sites.fract_transf_matrix[1][2]    0.01022 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 XNV A 1 201 201 XNV LIG . 
C 3 NA A 1 202 1 NA NA . 
D 3 NA A 1 203 2 NA NA . 
E 3 NA A 1 204 4 NA NA . 
F 3 NA A 1 205 5 NA NA . 
G 3 NA A 1 206 6 NA NA . 
H 3 NA A 1 207 7 NA NA . 
I 3 NA A 1 208 8 NA NA . 
J 3 NA A 1 209 9 NA NA . 
K 3 NA A 1 210 11 NA NA . 
L 3 NA A 1 211 12 NA NA . 
M 4 HOH A 1 301 134 HOH HOH . 
M 4 HOH A 2 302 46 HOH HOH . 
M 4 HOH A 3 303 20 HOH HOH . 
M 4 HOH A 4 304 66 HOH HOH . 
M 4 HOH A 5 305 75 HOH HOH . 
M 4 HOH A 6 306 86 HOH HOH . 
M 4 HOH A 7 307 35 HOH HOH . 
M 4 HOH A 8 308 109 HOH HOH . 
M 4 HOH A 9 309 56 HOH HOH . 
M 4 HOH A 10 310 34 HOH HOH . 
M 4 HOH A 11 311 85 HOH HOH . 
M 4 HOH A 12 312 54 HOH HOH . 
M 4 HOH A 13 313 18 HOH HOH . 
M 4 HOH A 14 314 6 HOH HOH . 
M 4 HOH A 15 315 2 HOH HOH . 
M 4 HOH A 16 316 166 HOH HOH . 
M 4 HOH A 17 317 3 HOH HOH . 
M 4 HOH A 18 318 22 HOH HOH . 
M 4 HOH A 19 319 1 HOH HOH . 
M 4 HOH A 20 320 4 HOH HOH . 
M 4 HOH A 21 321 9 HOH HOH . 
M 4 HOH A 22 322 52 HOH HOH . 
M 4 HOH A 23 323 76 HOH HOH . 
M 4 HOH A 24 324 15 HOH HOH . 
M 4 HOH A 25 325 19 HOH HOH . 
M 4 HOH A 26 326 40 HOH HOH . 
M 4 HOH A 27 327 43 HOH HOH . 
M 4 HOH A 28 328 30 HOH HOH . 
M 4 HOH A 29 329 62 HOH HOH . 
M 4 HOH A 30 330 44 HOH HOH . 
M 4 HOH A 31 331 70 HOH HOH . 
M 4 HOH A 32 332 84 HOH HOH . 
M 4 HOH A 33 333 118 HOH HOH . 
M 4 HOH A 34 334 63 HOH HOH . 
M 4 HOH A 35 335 97 HOH HOH . 
M 4 HOH A 36 336 82 HOH HOH . 
M 4 HOH A 37 337 7 HOH HOH . 
M 4 HOH A 38 338 28 HOH HOH . 
M 4 HOH A 39 339 26 HOH HOH . 
M 4 HOH A 40 340 5 HOH HOH . 
M 4 HOH A 41 341 12 HOH HOH . 
M 4 HOH A 42 342 67 HOH HOH . 
M 4 HOH A 43 343 27 HOH HOH . 
M 4 HOH A 44 344 36 HOH HOH . 
M 4 HOH A 45 345 164 HOH HOH . 
M 4 HOH A 46 346 49 HOH HOH . 
M 4 HOH A 47 347 8 HOH HOH . 
M 4 HOH A 48 348 29 HOH HOH . 
M 4 HOH A 49 349 127 HOH HOH . 
M 4 HOH A 50 350 39 HOH HOH . 
M 4 HOH A 51 351 16 HOH HOH . 
M 4 HOH A 52 352 113 HOH HOH . 
M 4 HOH A 53 353 50 HOH HOH . 
M 4 HOH A 54 354 42 HOH HOH . 
M 4 HOH A 55 355 71 HOH HOH . 
M 4 HOH A 56 356 11 HOH HOH . 
M 4 HOH A 57 357 45 HOH HOH . 
M 4 HOH A 58 358 24 HOH HOH . 
M 4 HOH A 59 359 13 HOH HOH . 
M 4 HOH A 60 360 33 HOH HOH . 
M 4 HOH A 61 361 17 HOH HOH . 
M 4 HOH A 62 362 106 HOH HOH . 
M 4 HOH A 63 363 92 HOH HOH . 
M 4 HOH A 64 364 98 HOH HOH . 
M 4 HOH A 65 365 55 HOH HOH . 
M 4 HOH A 66 366 10 HOH HOH . 
M 4 HOH A 67 367 37 HOH HOH . 
M 4 HOH A 68 368 25 HOH HOH . 
M 4 HOH A 69 369 77 HOH HOH . 
M 4 HOH A 70 370 47 HOH HOH . 
M 4 HOH A 71 371 41 HOH HOH . 
M 4 HOH A 72 372 80 HOH HOH . 
M 4 HOH A 73 373 60 HOH HOH . 
M 4 HOH A 74 374 21 HOH HOH . 
M 4 HOH A 75 375 147 HOH HOH . 
M 4 HOH A 76 376 116 HOH HOH . 
M 4 HOH A 77 377 51 HOH HOH . 
M 4 HOH A 78 378 81 HOH HOH . 
M 4 HOH A 79 379 48 HOH HOH . 
M 4 HOH A 80 380 125 HOH HOH . 
M 4 HOH A 81 381 126 HOH HOH . 
M 4 HOH A 82 382 133 HOH HOH . 
M 4 HOH A 83 383 31 HOH HOH . 
M 4 HOH A 84 384 65 HOH HOH . 
M 4 HOH A 85 385 38 HOH HOH . 
M 4 HOH A 86 386 53 HOH HOH . 
M 4 HOH A 87 387 69 HOH HOH . 
M 4 HOH A 88 388 143 HOH HOH . 
M 4 HOH A 89 389 96 HOH HOH . 
M 4 HOH A 90 390 167 HOH HOH . 
M 4 HOH A 91 391 23 HOH HOH . 
M 4 HOH A 92 392 79 HOH HOH . 
M 4 HOH A 93 393 14 HOH HOH . 
M 4 HOH A 94 394 142 HOH HOH . 
M 4 HOH A 95 395 89 HOH HOH . 
M 4 HOH A 96 396 32 HOH HOH . 
M 4 HOH A 97 397 93 HOH HOH . 
M 4 HOH A 98 398 104 HOH HOH . 
M 4 HOH A 99 399 132 HOH HOH . 
M 4 HOH A 100 400 111 HOH HOH . 
M 4 HOH A 101 401 68 HOH HOH . 
M 4 HOH A 102 402 136 HOH HOH . 
M 4 HOH A 103 403 100 HOH HOH . 
M 4 HOH A 104 404 90 HOH HOH . 
M 4 HOH A 105 405 102 HOH HOH . 
M 4 HOH A 106 406 130 HOH HOH . 
M 4 HOH A 107 407 103 HOH HOH . 
M 4 HOH A 108 408 139 HOH HOH . 
M 4 HOH A 109 409 83 HOH HOH . 
M 4 HOH A 110 410 95 HOH HOH . 
M 4 HOH A 111 411 105 HOH HOH . 
M 4 HOH A 112 412 74 HOH HOH . 
M 4 HOH A 113 413 148 HOH HOH . 
M 4 HOH A 114 414 162 HOH HOH . 
M 4 HOH A 115 415 115 HOH HOH . 
M 4 HOH A 116 416 58 HOH HOH . 
M 4 HOH A 117 417 141 HOH HOH . 
M 4 HOH A 118 418 122 HOH HOH . 
M 4 HOH A 119 419 171 HOH HOH . 
M 4 HOH A 120 420 129 HOH HOH . 
M 4 HOH A 121 421 117 HOH HOH . 
M 4 HOH A 122 422 145 HOH HOH . 
M 4 HOH A 123 423 91 HOH HOH . 
M 4 HOH A 124 424 169 HOH HOH . 
M 4 HOH A 125 425 72 HOH HOH . 
M 4 HOH A 126 426 124 HOH HOH . 
M 4 HOH A 127 427 108 HOH HOH . 
M 4 HOH A 128 428 107 HOH HOH . 
M 4 HOH A 129 429 146 HOH HOH . 
M 4 HOH A 130 430 144 HOH HOH . 
M 4 HOH A 131 431 57 HOH HOH . 
M 4 HOH A 132 432 112 HOH HOH . 
M 4 HOH A 133 433 114 HOH HOH . 
M 4 HOH A 134 434 87 HOH HOH . 
M 4 HOH A 135 435 99 HOH HOH . 
M 4 HOH A 136 436 140 HOH HOH . 
M 4 HOH A 137 437 73 HOH HOH . 
M 4 HOH A 138 438 135 HOH HOH . 
M 4 HOH A 139 439 78 HOH HOH . 
M 4 HOH A 140 440 121 HOH HOH . 
M 4 HOH A 141 441 137 HOH HOH . 
M 4 HOH A 142 442 59 HOH HOH . 
M 4 HOH A 143 443 165 HOH HOH . 
M 4 HOH A 144 444 123 HOH HOH . 
M 4 HOH A 145 445 138 HOH HOH . 
M 4 HOH A 146 446 168 HOH HOH . 
M 4 HOH A 147 447 128 HOH HOH . 
M 4 HOH A 148 448 149 HOH HOH . 
M 4 HOH A 149 449 61 HOH HOH . 
M 4 HOH A 150 450 94 HOH HOH . 
M 4 HOH A 151 451 163 HOH HOH . 
M 4 HOH A 152 452 120 HOH HOH . 
M 4 HOH A 153 453 131 HOH HOH . 
M 4 HOH A 154 454 170 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               20.282 
_atom_site.Cartn_y               34.891 
_atom_site.Cartn_z               -26.361 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        67.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           206 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#