data_8W3N
#
_model_server_result.job_id            HYiMJKLbtM9_5TRYbyzqLA 
_model_server_result.datetime_utc      '2025-08-21 02:56:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w3n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8W3N 
#
_exptl.entry_id    8W3N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W3N 
_cell.length_a            168.488 
_cell.length_b            168.488 
_cell.length_c            168.488 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W3N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    'P 4bd 2ab 3' 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_663 z+1,x+1,y-2 0 0 1 1 0 0 0 1 0 168.488 168.488 -336.976 
3 'crystal symmetry operation' 9_474 y-1,z+2,x-1 0 1 0 0 0 1 1 0 0 -168.488 336.976 -168.488 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 408 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 181 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 124 F CYS 155 1_555 A SG CYS 259 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 A SG CYS 146 F CYS 177 1_555 A SG CYS 158 F CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 A SG CYS 282 F CYS 313 1_555 A SG CYS 312 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 A SG CYS 291 F CYS 322 1_555 A SG CYS 302 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf7 A SG CYS 327 F CYS 358 1_555 A SG CYS 336 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf8 A SG CYS 351 F CYS 382 1_555 A SG CYS 362 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 A SG CYS 385 F CYS 416 1_555 A SG CYS 391 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
covale ? covale1 A ND2 ASN 469 F ASN 500 1_555 B C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8W3N 
_atom_sites.fract_transf_matrix[1][1]    0.005935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005935 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG F 1 601 510 NAG NAG . 
C 3 HOH F 1 701 21 HOH HOH . 
C 3 HOH F 2 702 24 HOH HOH . 
C 3 HOH F 3 703 6 HOH HOH . 
C 3 HOH F 4 704 27 HOH HOH . 
C 3 HOH F 5 705 41 HOH HOH . 
C 3 HOH F 6 706 23 HOH HOH . 
C 3 HOH F 7 707 19 HOH HOH . 
C 3 HOH F 8 708 11 HOH HOH . 
C 3 HOH F 9 709 15 HOH HOH . 
C 3 HOH F 10 710 16 HOH HOH . 
C 3 HOH F 11 711 8 HOH HOH . 
C 3 HOH F 12 712 1 HOH HOH . 
C 3 HOH F 13 713 45 HOH HOH . 
C 3 HOH F 14 714 36 HOH HOH . 
C 3 HOH F 15 715 39 HOH HOH . 
C 3 HOH F 16 716 12 HOH HOH . 
C 3 HOH F 17 717 17 HOH HOH . 
C 3 HOH F 18 718 30 HOH HOH . 
C 3 HOH F 19 719 22 HOH HOH . 
C 3 HOH F 20 720 13 HOH HOH . 
C 3 HOH F 21 721 18 HOH HOH . 
C 3 HOH F 22 722 4 HOH HOH . 
C 3 HOH F 23 723 3 HOH HOH . 
C 3 HOH F 24 724 28 HOH HOH . 
C 3 HOH F 25 725 46 HOH HOH . 
C 3 HOH F 26 726 26 HOH HOH . 
C 3 HOH F 27 727 9 HOH HOH . 
C 3 HOH F 28 728 5 HOH HOH . 
C 3 HOH F 29 729 40 HOH HOH . 
C 3 HOH F 30 730 14 HOH HOH . 
C 3 HOH F 31 731 7 HOH HOH . 
C 3 HOH F 32 732 43 HOH HOH . 
C 3 HOH F 33 733 29 HOH HOH . 
C 3 HOH F 34 734 34 HOH HOH . 
C 3 HOH F 35 735 25 HOH HOH . 
C 3 HOH F 36 736 32 HOH HOH . 
C 3 HOH F 37 737 31 HOH HOH . 
C 3 HOH F 38 738 47 HOH HOH . 
C 3 HOH F 39 739 33 HOH HOH . 
C 3 HOH F 40 740 35 HOH HOH . 
C 3 HOH F 41 741 38 HOH HOH . 
C 3 HOH F 42 742 52 HOH HOH . 
C 3 HOH F 43 743 37 HOH HOH . 
C 3 HOH F 44 744 20 HOH HOH . 
C 3 HOH F 45 745 49 HOH HOH . 
C 3 HOH F 46 746 2 HOH HOH . 
C 3 HOH F 47 747 54 HOH HOH . 
C 3 HOH F 48 748 10 HOH HOH . 
C 3 HOH F 49 749 53 HOH HOH . 
C 3 HOH F 50 750 51 HOH HOH . 
C 3 HOH F 51 751 50 HOH HOH . 
C 3 HOH F 52 752 42 HOH HOH . 
C 3 HOH F 53 753 48 HOH HOH . 
C 3 HOH F 54 754 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 196.979 361.728 45.78 1 135.04 ? C1 NAG 601 F 1 
HETATM 2 C C2 NAG . . . B 2 196.411 360.531 46.576 1 126.04 ? C2 NAG 601 F 1 
HETATM 3 C C3 NAG . . . B 2 196.671 360.72 48.075 1 123.86 ? C3 NAG 601 F 1 
HETATM 4 C C4 NAG . . . B 2 198.16 360.926 48.33 1 124.47 ? C4 NAG 601 F 1 
HETATM 5 C C5 NAG . . . B 2 198.645 362.144 47.543 1 131.41 ? C5 NAG 601 F 1 
HETATM 6 C C6 NAG . . . B 2 200.12 362.45 47.732 1 122.42 ? C6 NAG 601 F 1 
HETATM 7 C C7 NAG . . . B 2 194.509 359.508 45.396 1 114.07 ? C7 NAG 601 F 1 
HETATM 8 C C8 NAG . . . B 2 193.017 359.467 45.257 1 111.75 ? C8 NAG 601 F 1 
HETATM 9 N N2 NAG . . . B 2 194.99 360.356 46.314 1 119.76 ? N2 NAG 601 F 1 
HETATM 10 O O3 NAG . . . B 2 196.189 359.601 48.813 1 118.06 ? O3 NAG 601 F 1 
HETATM 11 O O4 NAG . . . B 2 198.418 361.095 49.721 1 111.06 ? O4 NAG 601 F 1 
HETATM 12 O O5 NAG . . . B 2 198.412 361.937 46.137 1 139.36 ? O5 NAG 601 F 1 
HETATM 13 O O6 NAG . . . B 2 200.93 362.036 46.638 1 114.82 ? O6 NAG 601 F 1 
HETATM 14 O O7 NAG . . . B 2 195.245 358.804 44.711 1 109.47 ? O7 NAG 601 F 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#