data_8W3O # _model_server_result.job_id WO4msufoCQLn16Hy9zz66g _model_server_result.datetime_utc '2025-08-21 02:54:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8W3O # _exptl.entry_id 8W3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W3O _cell.length_a 169.529 _cell.length_b 169.529 _cell.length_c 169.529 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 F CYS 37 1_555 A SG CYS 408 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 73 F CYS 69 1_555 A SG CYS 181 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 124 F CYS 155 1_555 A SG CYS 259 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 146 F CYS 177 1_555 A SG CYS 158 F CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 282 F CYS 313 1_555 A SG CYS 312 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 A SG CYS 291 F CYS 322 1_555 A SG CYS 302 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 327 F CYS 358 1_555 A SG CYS 336 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf8 A SG CYS 351 F CYS 382 1_555 A SG CYS 362 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf9 A SG CYS 385 F CYS 416 1_555 A SG CYS 391 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? covale ? covale1 A ND2 ASN 469 F ASN 500 1_555 B C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8W3O _atom_sites.fract_transf_matrix[1][1] 0.005899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG F 1 601 510 NAG NAG . C 3 HOH F 1 701 145 HOH HOH . C 3 HOH F 2 702 144 HOH HOH . C 3 HOH F 3 703 93 HOH HOH . C 3 HOH F 4 704 62 HOH HOH . C 3 HOH F 5 705 52 HOH HOH . C 3 HOH F 6 706 89 HOH HOH . C 3 HOH F 7 707 60 HOH HOH . C 3 HOH F 8 708 121 HOH HOH . C 3 HOH F 9 709 125 HOH HOH . C 3 HOH F 10 710 3 HOH HOH . C 3 HOH F 11 711 58 HOH HOH . C 3 HOH F 12 712 76 HOH HOH . C 3 HOH F 13 713 142 HOH HOH . C 3 HOH F 14 714 16 HOH HOH . C 3 HOH F 15 715 30 HOH HOH . C 3 HOH F 16 716 136 HOH HOH . C 3 HOH F 17 717 92 HOH HOH . C 3 HOH F 18 718 72 HOH HOH . C 3 HOH F 19 719 40 HOH HOH . C 3 HOH F 20 720 20 HOH HOH . C 3 HOH F 21 721 26 HOH HOH . C 3 HOH F 22 722 64 HOH HOH . C 3 HOH F 23 723 66 HOH HOH . C 3 HOH F 24 724 128 HOH HOH . C 3 HOH F 25 725 48 HOH HOH . C 3 HOH F 26 726 53 HOH HOH . C 3 HOH F 27 727 18 HOH HOH . C 3 HOH F 28 728 108 HOH HOH . C 3 HOH F 29 729 2 HOH HOH . C 3 HOH F 30 730 94 HOH HOH . C 3 HOH F 31 731 54 HOH HOH . C 3 HOH F 32 732 75 HOH HOH . C 3 HOH F 33 733 51 HOH HOH . C 3 HOH F 34 734 109 HOH HOH . C 3 HOH F 35 735 10 HOH HOH . C 3 HOH F 36 736 25 HOH HOH . C 3 HOH F 37 737 33 HOH HOH . C 3 HOH F 38 738 37 HOH HOH . C 3 HOH F 39 739 11 HOH HOH . C 3 HOH F 40 740 81 HOH HOH . C 3 HOH F 41 741 24 HOH HOH . C 3 HOH F 42 742 127 HOH HOH . C 3 HOH F 43 743 19 HOH HOH . C 3 HOH F 44 744 59 HOH HOH . C 3 HOH F 45 745 116 HOH HOH . C 3 HOH F 46 746 87 HOH HOH . C 3 HOH F 47 747 27 HOH HOH . C 3 HOH F 48 748 47 HOH HOH . C 3 HOH F 49 749 123 HOH HOH . C 3 HOH F 50 750 101 HOH HOH . C 3 HOH F 51 751 129 HOH HOH . C 3 HOH F 52 752 135 HOH HOH . C 3 HOH F 53 753 91 HOH HOH . C 3 HOH F 54 754 90 HOH HOH . C 3 HOH F 55 755 17 HOH HOH . C 3 HOH F 56 756 61 HOH HOH . C 3 HOH F 57 757 15 HOH HOH . C 3 HOH F 58 758 95 HOH HOH . C 3 HOH F 59 759 113 HOH HOH . C 3 HOH F 60 760 77 HOH HOH . C 3 HOH F 61 761 35 HOH HOH . C 3 HOH F 62 762 41 HOH HOH . C 3 HOH F 63 763 43 HOH HOH . C 3 HOH F 64 764 5 HOH HOH . C 3 HOH F 65 765 38 HOH HOH . C 3 HOH F 66 766 78 HOH HOH . C 3 HOH F 67 767 74 HOH HOH . C 3 HOH F 68 768 110 HOH HOH . C 3 HOH F 69 769 29 HOH HOH . C 3 HOH F 70 770 98 HOH HOH . C 3 HOH F 71 771 56 HOH HOH . C 3 HOH F 72 772 106 HOH HOH . C 3 HOH F 73 773 31 HOH HOH . C 3 HOH F 74 774 1 HOH HOH . C 3 HOH F 75 775 118 HOH HOH . C 3 HOH F 76 776 44 HOH HOH . C 3 HOH F 77 777 34 HOH HOH . C 3 HOH F 78 778 119 HOH HOH . C 3 HOH F 79 779 83 HOH HOH . C 3 HOH F 80 780 70 HOH HOH . C 3 HOH F 81 781 7 HOH HOH . C 3 HOH F 82 782 21 HOH HOH . C 3 HOH F 83 783 13 HOH HOH . C 3 HOH F 84 784 149 HOH HOH . C 3 HOH F 85 785 85 HOH HOH . C 3 HOH F 86 786 46 HOH HOH . C 3 HOH F 87 787 107 HOH HOH . C 3 HOH F 88 788 147 HOH HOH . C 3 HOH F 89 789 63 HOH HOH . C 3 HOH F 90 790 71 HOH HOH . C 3 HOH F 91 791 50 HOH HOH . C 3 HOH F 92 792 140 HOH HOH . C 3 HOH F 93 793 36 HOH HOH . C 3 HOH F 94 794 86 HOH HOH . C 3 HOH F 95 795 4 HOH HOH . C 3 HOH F 96 796 39 HOH HOH . C 3 HOH F 97 797 8 HOH HOH . C 3 HOH F 98 798 79 HOH HOH . C 3 HOH F 99 799 6 HOH HOH . C 3 HOH F 100 800 103 HOH HOH . C 3 HOH F 101 801 14 HOH HOH . C 3 HOH F 102 802 111 HOH HOH . C 3 HOH F 103 803 97 HOH HOH . C 3 HOH F 104 804 12 HOH HOH . C 3 HOH F 105 805 96 HOH HOH . C 3 HOH F 106 806 138 HOH HOH . C 3 HOH F 107 807 148 HOH HOH . C 3 HOH F 108 808 102 HOH HOH . C 3 HOH F 109 809 45 HOH HOH . C 3 HOH F 110 810 23 HOH HOH . C 3 HOH F 111 811 112 HOH HOH . C 3 HOH F 112 812 65 HOH HOH . C 3 HOH F 113 813 55 HOH HOH . C 3 HOH F 114 814 100 HOH HOH . C 3 HOH F 115 815 99 HOH HOH . C 3 HOH F 116 816 32 HOH HOH . C 3 HOH F 117 817 9 HOH HOH . C 3 HOH F 118 818 160 HOH HOH . C 3 HOH F 119 819 69 HOH HOH . C 3 HOH F 120 820 73 HOH HOH . C 3 HOH F 121 821 167 HOH HOH . C 3 HOH F 122 822 131 HOH HOH . C 3 HOH F 123 823 122 HOH HOH . C 3 HOH F 124 824 134 HOH HOH . C 3 HOH F 125 825 67 HOH HOH . C 3 HOH F 126 826 130 HOH HOH . C 3 HOH F 127 827 28 HOH HOH . C 3 HOH F 128 828 88 HOH HOH . C 3 HOH F 129 829 143 HOH HOH . C 3 HOH F 130 830 117 HOH HOH . C 3 HOH F 131 831 82 HOH HOH . C 3 HOH F 132 832 164 HOH HOH . C 3 HOH F 133 833 161 HOH HOH . C 3 HOH F 134 834 165 HOH HOH . C 3 HOH F 135 835 162 HOH HOH . C 3 HOH F 136 836 163 HOH HOH . C 3 HOH F 137 837 158 HOH HOH . C 3 HOH F 138 838 126 HOH HOH . C 3 HOH F 139 839 152 HOH HOH . C 3 HOH F 140 840 80 HOH HOH . C 3 HOH F 141 841 104 HOH HOH . C 3 HOH F 142 842 124 HOH HOH . C 3 HOH F 143 843 156 HOH HOH . C 3 HOH F 144 844 49 HOH HOH . C 3 HOH F 145 845 57 HOH HOH . C 3 HOH F 146 846 114 HOH HOH . C 3 HOH F 147 847 151 HOH HOH . C 3 HOH F 148 848 150 HOH HOH . C 3 HOH F 149 849 157 HOH HOH . C 3 HOH F 150 850 168 HOH HOH . C 3 HOH F 151 851 166 HOH HOH . C 3 HOH F 152 852 137 HOH HOH . C 3 HOH F 153 853 141 HOH HOH . C 3 HOH F 154 854 139 HOH HOH . C 3 HOH F 155 855 133 HOH HOH . C 3 HOH F 156 856 132 HOH HOH . C 3 HOH F 157 857 42 HOH HOH . C 3 HOH F 158 858 105 HOH HOH . C 3 HOH F 159 859 146 HOH HOH . C 3 HOH F 160 860 159 HOH HOH . C 3 HOH F 161 861 68 HOH HOH . C 3 HOH F 162 862 22 HOH HOH . C 3 HOH F 163 863 115 HOH HOH . C 3 HOH F 164 864 153 HOH HOH . C 3 HOH F 165 865 84 HOH HOH . C 3 HOH F 166 866 155 HOH HOH . C 3 HOH F 167 867 154 HOH HOH . C 3 HOH F 168 868 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 26.692 23.362 44.371 1 98.98 ? C1 NAG 601 F 1 HETATM 2 C C2 NAG . . . B 2 26.509 21.842 44.426 1 101.8 ? C2 NAG 601 F 1 HETATM 3 C C3 NAG . . . B 2 25.65 21.472 45.633 1 104.67 ? C3 NAG 601 F 1 HETATM 4 C C4 NAG . . . B 2 26.282 22.008 46.912 1 108.83 ? C4 NAG 601 F 1 HETATM 5 C C5 NAG . . . B 2 26.515 23.517 46.803 1 103.83 ? C5 NAG 601 F 1 HETATM 6 C C6 NAG . . . B 2 27.263 24.095 47.987 1 104.35 ? C6 NAG 601 F 1 HETATM 7 C C7 NAG . . . B 2 26.648 20.675 42.259 1 86.74 ? C7 NAG 601 F 1 HETATM 8 C C8 NAG . . . B 2 25.873 20.154 41.086 1 77.39 ? C8 NAG 601 F 1 HETATM 9 N N2 NAG . . . B 2 25.932 21.305 43.201 1 97.13 ? N2 NAG 601 F 1 HETATM 10 O O3 NAG . . . B 2 25.483 20.059 45.707 1 106.59 ? O3 NAG 601 F 1 HETATM 11 O O4 NAG . . . B 2 25.435 21.742 48.025 1 110.88 ? O4 NAG 601 F 1 HETATM 12 O O5 NAG . . . B 2 27.285 23.828 45.627 1 102.99 ? O5 NAG 601 F 1 HETATM 13 O O6 NAG . . . B 2 28.339 23.267 48.408 1 95.95 ? O6 NAG 601 F 1 HETATM 14 O O7 NAG . . . B 2 27.866 20.539 42.344 1 85.46 ? O7 NAG 601 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #