data_8W47 # _model_server_result.job_id GPGZ5k0zrQb4VVwEeU4_mw _model_server_result.datetime_utc '2025-06-25 21:57:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8W47 # _exptl.entry_id 8W47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.269 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]benzene-1,3-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W47 _cell.length_a 43.319 _cell.length_b 84.15 _cell.length_c 63.201 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -43.319 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 131 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 D NA NA . A NA 202 1_555 G O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 D NA NA . A NA 202 1_555 G O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 B O ASP 131 B ASP 99 1_555 F NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc5 B OD2 ASP 131 B ASP 99 1_555 F NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc6 F NA NA . B NA 202 1_555 H O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 F NA NA . B NA 202 1_555 H O HOH . B HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc8 F NA NA . B NA 202 1_555 H O HOH . B HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc9 F NA NA . B NA 202 1_555 H O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'C15 H14 O4' _chem_comp.formula_weight 258.269 _chem_comp.id P5O _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]benzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAS OAR P5O sing 218 n n OAR CAD P5O sing 219 n n OAQ CAF P5O sing 220 n n CAD CAF P5O doub 221 n y CAD CAB P5O sing 222 n y CAF CAE P5O sing 223 n y CAB CAA P5O doub 224 n y CAE CAC P5O doub 225 n y CAA CAC P5O sing 226 n y CAA CAG P5O sing 227 n n CAH CAG P5O doub 228 e n CAH CAI P5O sing 229 n n CAI CAK P5O doub 230 n y CAI CAJ P5O sing 231 n y CAK CAM P5O sing 232 n y CAJ CAL P5O doub 233 n y CAM OAP P5O sing 234 n n CAM CAN P5O doub 235 n y CAL CAN P5O sing 236 n y CAL OAO P5O sing 237 n n CAB H1 P5O sing 238 n n CAC H2 P5O sing 239 n n CAE H3 P5O sing 240 n n CAG H4 P5O sing 241 n n CAH H6 P5O sing 242 n n CAJ H8 P5O sing 243 n n CAK H9 P5O sing 244 n n CAN H10 P5O sing 245 n n CAS H11 P5O sing 246 n n CAS H12 P5O sing 247 n n CAS H13 P5O sing 248 n n OAO H14 P5O sing 249 n n OAP H15 P5O sing 250 n n OAQ H16 P5O sing 251 n n # _atom_sites.entry_id 8W47 _atom_sites.fract_transf_matrix[1][1] 0.023085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P5O A 1 201 200 P5O DRG . D 3 NA A 1 202 1 NA NA . E 2 P5O B 1 201 200 P5O DRG . F 3 NA B 1 202 1 NA NA . G 4 HOH A 1 301 81 HOH HOH . G 4 HOH A 2 302 151 HOH HOH . G 4 HOH A 3 303 84 HOH HOH . G 4 HOH A 4 304 18 HOH HOH . G 4 HOH A 5 305 172 HOH HOH . G 4 HOH A 6 306 174 HOH HOH . G 4 HOH A 7 307 155 HOH HOH . G 4 HOH A 8 308 71 HOH HOH . G 4 HOH A 9 309 4 HOH HOH . G 4 HOH A 10 310 25 HOH HOH . G 4 HOH A 11 311 99 HOH HOH . G 4 HOH A 12 312 143 HOH HOH . G 4 HOH A 13 313 66 HOH HOH . G 4 HOH A 14 314 192 HOH HOH . G 4 HOH A 15 315 2 HOH HOH . G 4 HOH A 16 316 177 HOH HOH . G 4 HOH A 17 317 37 HOH HOH . G 4 HOH A 18 318 146 HOH HOH . G 4 HOH A 19 319 85 HOH HOH . G 4 HOH A 20 320 5 HOH HOH . G 4 HOH A 21 321 15 HOH HOH . G 4 HOH A 22 322 22 HOH HOH . G 4 HOH A 23 323 16 HOH HOH . G 4 HOH A 24 324 67 HOH HOH . G 4 HOH A 25 325 50 HOH HOH . G 4 HOH A 26 326 144 HOH HOH . G 4 HOH A 27 327 54 HOH HOH . G 4 HOH A 28 328 6 HOH HOH . G 4 HOH A 29 329 178 HOH HOH . G 4 HOH A 30 330 14 HOH HOH . G 4 HOH A 31 331 19 HOH HOH . G 4 HOH A 32 332 34 HOH HOH . G 4 HOH A 33 333 179 HOH HOH . G 4 HOH A 34 334 13 HOH HOH . G 4 HOH A 35 335 64 HOH HOH . G 4 HOH A 36 336 72 HOH HOH . G 4 HOH A 37 337 58 HOH HOH . G 4 HOH A 38 338 68 HOH HOH . G 4 HOH A 39 339 135 HOH HOH . G 4 HOH A 40 340 180 HOH HOH . G 4 HOH A 41 341 168 HOH HOH . G 4 HOH A 42 342 97 HOH HOH . G 4 HOH A 43 343 32 HOH HOH . G 4 HOH A 44 344 141 HOH HOH . G 4 HOH A 45 345 148 HOH HOH . G 4 HOH A 46 346 119 HOH HOH . G 4 HOH A 47 347 140 HOH HOH . G 4 HOH A 48 348 61 HOH HOH . G 4 HOH A 49 349 129 HOH HOH . G 4 HOH A 50 350 23 HOH HOH . G 4 HOH A 51 351 186 HOH HOH . G 4 HOH A 52 352 166 HOH HOH . G 4 HOH A 53 353 137 HOH HOH . G 4 HOH A 54 354 27 HOH HOH . G 4 HOH A 55 355 142 HOH HOH . G 4 HOH A 56 356 170 HOH HOH . G 4 HOH A 57 357 128 HOH HOH . G 4 HOH A 58 358 190 HOH HOH . G 4 HOH A 59 359 198 HOH HOH . G 4 HOH A 60 360 87 HOH HOH . G 4 HOH A 61 361 35 HOH HOH . G 4 HOH A 62 362 162 HOH HOH . G 4 HOH A 63 363 76 HOH HOH . G 4 HOH A 64 364 132 HOH HOH . G 4 HOH A 65 365 45 HOH HOH . G 4 HOH A 66 366 116 HOH HOH . G 4 HOH A 67 367 160 HOH HOH . G 4 HOH A 68 368 83 HOH HOH . G 4 HOH A 69 369 175 HOH HOH . G 4 HOH A 70 370 78 HOH HOH . G 4 HOH A 71 371 115 HOH HOH . G 4 HOH A 72 372 93 HOH HOH . G 4 HOH A 73 373 92 HOH HOH . G 4 HOH A 74 374 94 HOH HOH . G 4 HOH A 75 375 107 HOH HOH . G 4 HOH A 76 376 49 HOH HOH . G 4 HOH A 77 377 106 HOH HOH . G 4 HOH A 78 378 90 HOH HOH . G 4 HOH A 79 379 112 HOH HOH . G 4 HOH A 80 380 196 HOH HOH . G 4 HOH A 81 381 121 HOH HOH . G 4 HOH A 82 382 105 HOH HOH . G 4 HOH A 83 383 191 HOH HOH . G 4 HOH A 84 384 167 HOH HOH . G 4 HOH A 85 385 98 HOH HOH . G 4 HOH A 86 386 43 HOH HOH . G 4 HOH A 87 387 126 HOH HOH . H 4 HOH B 1 301 139 HOH HOH . H 4 HOH B 2 302 77 HOH HOH . H 4 HOH B 3 303 181 HOH HOH . H 4 HOH B 4 304 147 HOH HOH . H 4 HOH B 5 305 133 HOH HOH . H 4 HOH B 6 306 130 HOH HOH . H 4 HOH B 7 307 48 HOH HOH . H 4 HOH B 8 308 176 HOH HOH . H 4 HOH B 9 309 69 HOH HOH . H 4 HOH B 10 310 159 HOH HOH . H 4 HOH B 11 311 70 HOH HOH . H 4 HOH B 12 312 24 HOH HOH . H 4 HOH B 13 313 36 HOH HOH . H 4 HOH B 14 314 26 HOH HOH . H 4 HOH B 15 315 104 HOH HOH . H 4 HOH B 16 316 63 HOH HOH . H 4 HOH B 17 317 100 HOH HOH . H 4 HOH B 18 318 203 HOH HOH . H 4 HOH B 19 319 145 HOH HOH . H 4 HOH B 20 320 53 HOH HOH . H 4 HOH B 21 321 163 HOH HOH . H 4 HOH B 22 322 89 HOH HOH . H 4 HOH B 23 323 7 HOH HOH . H 4 HOH B 24 324 125 HOH HOH . H 4 HOH B 25 325 42 HOH HOH . H 4 HOH B 26 326 29 HOH HOH . H 4 HOH B 27 327 11 HOH HOH . H 4 HOH B 28 328 44 HOH HOH . H 4 HOH B 29 329 3 HOH HOH . H 4 HOH B 30 330 194 HOH HOH . H 4 HOH B 31 331 156 HOH HOH . H 4 HOH B 32 332 28 HOH HOH . H 4 HOH B 33 333 8 HOH HOH . H 4 HOH B 34 334 10 HOH HOH . H 4 HOH B 35 335 202 HOH HOH . H 4 HOH B 36 336 200 HOH HOH . H 4 HOH B 37 337 30 HOH HOH . H 4 HOH B 38 338 73 HOH HOH . H 4 HOH B 39 339 153 HOH HOH . H 4 HOH B 40 340 9 HOH HOH . H 4 HOH B 41 341 62 HOH HOH . H 4 HOH B 42 342 131 HOH HOH . H 4 HOH B 43 343 1 HOH HOH . H 4 HOH B 44 344 184 HOH HOH . H 4 HOH B 45 345 79 HOH HOH . H 4 HOH B 46 346 17 HOH HOH . H 4 HOH B 47 347 52 HOH HOH . H 4 HOH B 48 348 136 HOH HOH . H 4 HOH B 49 349 39 HOH HOH . H 4 HOH B 50 350 150 HOH HOH . H 4 HOH B 51 351 21 HOH HOH . H 4 HOH B 52 352 57 HOH HOH . H 4 HOH B 53 353 40 HOH HOH . H 4 HOH B 54 354 31 HOH HOH . H 4 HOH B 55 355 38 HOH HOH . H 4 HOH B 56 356 165 HOH HOH . H 4 HOH B 57 357 47 HOH HOH . H 4 HOH B 58 358 12 HOH HOH . H 4 HOH B 59 359 82 HOH HOH . H 4 HOH B 60 360 103 HOH HOH . H 4 HOH B 61 361 110 HOH HOH . H 4 HOH B 62 362 56 HOH HOH . H 4 HOH B 63 363 164 HOH HOH . H 4 HOH B 64 364 65 HOH HOH . H 4 HOH B 65 365 55 HOH HOH . H 4 HOH B 66 366 33 HOH HOH . H 4 HOH B 67 367 75 HOH HOH . H 4 HOH B 68 368 74 HOH HOH . H 4 HOH B 69 369 95 HOH HOH . H 4 HOH B 70 370 157 HOH HOH . H 4 HOH B 71 371 86 HOH HOH . H 4 HOH B 72 372 20 HOH HOH . H 4 HOH B 73 373 46 HOH HOH . H 4 HOH B 74 374 195 HOH HOH . H 4 HOH B 75 375 134 HOH HOH . H 4 HOH B 76 376 182 HOH HOH . H 4 HOH B 77 377 101 HOH HOH . H 4 HOH B 78 378 41 HOH HOH . H 4 HOH B 79 379 88 HOH HOH . H 4 HOH B 80 380 122 HOH HOH . H 4 HOH B 81 381 188 HOH HOH . H 4 HOH B 82 382 118 HOH HOH . H 4 HOH B 83 383 154 HOH HOH . H 4 HOH B 84 384 60 HOH HOH . H 4 HOH B 85 385 158 HOH HOH . H 4 HOH B 86 386 102 HOH HOH . H 4 HOH B 87 387 113 HOH HOH . H 4 HOH B 88 388 123 HOH HOH . H 4 HOH B 89 389 117 HOH HOH . H 4 HOH B 90 390 197 HOH HOH . H 4 HOH B 91 391 109 HOH HOH . H 4 HOH B 92 392 138 HOH HOH . H 4 HOH B 93 393 108 HOH HOH . H 4 HOH B 94 394 120 HOH HOH . H 4 HOH B 95 395 169 HOH HOH . H 4 HOH B 96 396 152 HOH HOH . H 4 HOH B 97 397 91 HOH HOH . H 4 HOH B 98 398 96 HOH HOH . H 4 HOH B 99 399 127 HOH HOH . H 4 HOH B 100 400 161 HOH HOH . H 4 HOH B 101 401 80 HOH HOH . H 4 HOH B 102 402 51 HOH HOH . H 4 HOH B 103 403 185 HOH HOH . H 4 HOH B 104 404 59 HOH HOH . H 4 HOH B 105 405 114 HOH HOH . H 4 HOH B 106 406 111 HOH HOH . H 4 HOH B 107 407 193 HOH HOH . H 4 HOH B 108 408 124 HOH HOH . H 4 HOH B 109 409 189 HOH HOH . H 4 HOH B 110 410 199 HOH HOH . H 4 HOH B 111 411 173 HOH HOH . H 4 HOH B 112 412 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA P5O . . . C 2 -22.166 0.496 -4.504 0.5 18.6 ? CAA P5O 201 A 1 HETATM 2 C CAB P5O . . . C 2 -21.19 -0.277 -3.869 0.5 18.51 ? CAB P5O 201 A 1 HETATM 3 C CAC P5O . . . C 2 -23.086 1.202 -3.73 0.5 20.03 ? CAC P5O 201 A 1 HETATM 4 C CAD P5O . . . C 2 -21.156 -0.327 -2.472 0.5 20.74 ? CAD P5O 201 A 1 HETATM 5 C CAE P5O . . . C 2 -23.053 1.155 -2.34 0.5 21.63 ? CAE P5O 201 A 1 HETATM 6 C CAF P5O . . . C 2 -22.08 0.386 -1.72 0.5 20.91 ? CAF P5O 201 A 1 HETATM 7 C CAG P5O . . . C 2 -22.27 0.601 -5.898 0.5 17.78 ? CAG P5O 201 A 1 HETATM 8 C CAH P5O . . . C 2 -21.341 -0.254 -6.768 0.5 15.31 ? CAH P5O 201 A 1 HETATM 9 C CAI P5O . . . C 2 -21.453 -0.144 -8.163 0.5 13.89 ? CAI P5O 201 A 1 HETATM 10 C CAJ P5O . . . C 2 -21.938 0.999 -8.797 0.5 14.68 ? CAJ P5O 201 A 1 HETATM 11 C CAK P5O . . . C 2 -21.055 -1.218 -8.958 0.5 14.37 ? CAK P5O 201 A 1 HETATM 12 C CAL P5O . . . C 2 -22.022 1.059 -10.192 0.5 14.93 ? CAL P5O 201 A 1 HETATM 13 C CAM P5O . . . C 2 -21.14 -1.164 -10.349 0.5 14.36 ? CAM P5O 201 A 1 HETATM 14 C CAN P5O . . . C 2 -21.625 -0.021 -10.973 0.5 15.02 ? CAN P5O 201 A 1 HETATM 15 C CAS P5O . . . C 2 -19.278 -1.699 -2.576 0.5 22.89 ? CAS P5O 201 A 1 HETATM 16 O OAO P5O . . . C 2 -22.499 2.18 -10.803 0.5 16.67 ? OAO P5O 201 A 1 HETATM 17 O OAP P5O . . . C 2 -20.744 -2.232 -11.098 0.5 15.18 ? OAP P5O 201 A 1 HETATM 18 O OAQ P5O . . . C 2 -21.978 0.286 -0.364 0.5 21.82 ? OAQ P5O 201 A 1 HETATM 19 O OAR P5O . . . C 2 -20.247 -1.046 -1.75 0.5 22.75 ? OAR P5O 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 19 #