data_8W4B # _model_server_result.job_id HX2GIj3d1AjWDBD-jaByrw _model_server_result.datetime_utc '2024-11-24 13:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8W4B # _exptl.entry_id 8W4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W4B _cell.length_a 161.196 _cell.length_b 161.196 _cell.length_c 161.196 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 290 n n C1 C10 STR sing 291 n n C1 H11 STR sing 292 n n C1 H12 STR sing 293 n n C2 C3 STR sing 294 n n C2 H21 STR sing 295 n n C2 H22 STR sing 296 n n C3 O3 STR doub 297 n n C3 C4 STR sing 298 n n C4 C5 STR doub 299 n n C4 H4 STR sing 300 n n C5 C6 STR sing 301 n n C5 C10 STR sing 302 n n C6 C7 STR sing 303 n n C6 H61 STR sing 304 n n C6 H62 STR sing 305 n n C7 C8 STR sing 306 n n C7 H71 STR sing 307 n n C7 H72 STR sing 308 n n C8 C9 STR sing 309 n n C8 C14 STR sing 310 n n C8 H8 STR sing 311 n n C9 C10 STR sing 312 n n C9 C11 STR sing 313 n n C9 H9 STR sing 314 n n C10 C19 STR sing 315 n n C11 C12 STR sing 316 n n C11 H111 STR sing 317 n n C11 H112 STR sing 318 n n C12 C13 STR sing 319 n n C12 H121 STR sing 320 n n C12 H122 STR sing 321 n n C13 C14 STR sing 322 n n C13 C17 STR sing 323 n n C13 C18 STR sing 324 n n C14 C15 STR sing 325 n n C14 H14 STR sing 326 n n C15 C16 STR sing 327 n n C15 H151 STR sing 328 n n C15 H152 STR sing 329 n n C16 C17 STR sing 330 n n C16 H161 STR sing 331 n n C16 H162 STR sing 332 n n C17 C20 STR sing 333 n n C17 H17 STR sing 334 n n C18 H181 STR sing 335 n n C18 H182 STR sing 336 n n C18 H183 STR sing 337 n n C19 H191 STR sing 338 n n C19 H192 STR sing 339 n n C19 H193 STR sing 340 n n C20 O20 STR doub 341 n n C20 C21 STR sing 342 n n C21 H211 STR sing 343 n n C21 H212 STR sing 344 n n C21 H213 STR sing 345 n n # _atom_sites.entry_id 8W4B _atom_sites.fract_transf_matrix[1][1] 0.006204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STR A 1 301 301 STR STR . C 3 HOH A 1 401 4 HOH HOH . C 3 HOH A 2 402 12 HOH HOH . C 3 HOH A 3 403 14 HOH HOH . C 3 HOH A 4 404 23 HOH HOH . C 3 HOH A 5 405 36 HOH HOH . C 3 HOH A 6 406 64 HOH HOH . C 3 HOH A 7 407 54 HOH HOH . C 3 HOH A 8 408 5 HOH HOH . C 3 HOH A 9 409 42 HOH HOH . C 3 HOH A 10 410 6 HOH HOH . C 3 HOH A 11 411 47 HOH HOH . C 3 HOH A 12 412 59 HOH HOH . C 3 HOH A 13 413 19 HOH HOH . C 3 HOH A 14 414 9 HOH HOH . C 3 HOH A 15 415 13 HOH HOH . C 3 HOH A 16 416 67 HOH HOH . C 3 HOH A 17 417 10 HOH HOH . C 3 HOH A 18 418 48 HOH HOH . C 3 HOH A 19 419 57 HOH HOH . C 3 HOH A 20 420 69 HOH HOH . C 3 HOH A 21 421 31 HOH HOH . C 3 HOH A 22 422 7 HOH HOH . C 3 HOH A 23 423 17 HOH HOH . C 3 HOH A 24 424 30 HOH HOH . C 3 HOH A 25 425 37 HOH HOH . C 3 HOH A 26 426 18 HOH HOH . C 3 HOH A 27 427 39 HOH HOH . C 3 HOH A 28 428 29 HOH HOH . C 3 HOH A 29 429 52 HOH HOH . C 3 HOH A 30 430 26 HOH HOH . C 3 HOH A 31 431 1 HOH HOH . C 3 HOH A 32 432 21 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 25 HOH HOH . C 3 HOH A 35 435 2 HOH HOH . C 3 HOH A 36 436 20 HOH HOH . C 3 HOH A 37 437 15 HOH HOH . C 3 HOH A 38 438 16 HOH HOH . C 3 HOH A 39 439 73 HOH HOH . C 3 HOH A 40 440 46 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 8 HOH HOH . C 3 HOH A 43 443 27 HOH HOH . C 3 HOH A 44 444 28 HOH HOH . C 3 HOH A 45 445 11 HOH HOH . C 3 HOH A 46 446 3 HOH HOH . C 3 HOH A 47 447 80 HOH HOH . C 3 HOH A 48 448 35 HOH HOH . C 3 HOH A 49 449 43 HOH HOH . C 3 HOH A 50 450 65 HOH HOH . C 3 HOH A 51 451 22 HOH HOH . C 3 HOH A 52 452 62 HOH HOH . C 3 HOH A 53 453 38 HOH HOH . C 3 HOH A 54 454 66 HOH HOH . C 3 HOH A 55 455 78 HOH HOH . C 3 HOH A 56 456 61 HOH HOH . C 3 HOH A 57 457 45 HOH HOH . C 3 HOH A 58 458 55 HOH HOH . C 3 HOH A 59 459 76 HOH HOH . C 3 HOH A 60 460 40 HOH HOH . C 3 HOH A 61 461 63 HOH HOH . C 3 HOH A 62 462 49 HOH HOH . C 3 HOH A 63 463 53 HOH HOH . C 3 HOH A 64 464 74 HOH HOH . C 3 HOH A 65 465 71 HOH HOH . C 3 HOH A 66 466 51 HOH HOH . C 3 HOH A 67 467 72 HOH HOH . C 3 HOH A 68 468 70 HOH HOH . C 3 HOH A 69 469 60 HOH HOH . C 3 HOH A 70 470 44 HOH HOH . C 3 HOH A 71 471 58 HOH HOH . C 3 HOH A 72 472 75 HOH HOH . C 3 HOH A 73 473 24 HOH HOH . C 3 HOH A 74 474 79 HOH HOH . C 3 HOH A 75 475 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . B 2 -22.626 -45.428 22.402 1 54.63 ? C1 STR 301 A 1 HETATM 2 C C2 STR . . . B 2 -23.458 -46.672 22.119 1 57.27 ? C2 STR 301 A 1 HETATM 3 C C3 STR . . . B 2 -22.731 -47.849 22.712 1 61.86 ? C3 STR 301 A 1 HETATM 4 O O3 STR . . . B 2 -22.801 -48.919 22.203 1 62.84 ? O3 STR 301 A 1 HETATM 5 C C4 STR . . . B 2 -21.899 -47.655 23.952 1 57.66 ? C4 STR 301 A 1 HETATM 6 C C5 STR . . . B 2 -21.916 -46.501 24.587 1 57.02 ? C5 STR 301 A 1 HETATM 7 C C6 STR . . . B 2 -21.277 -46.413 25.957 1 52.87 ? C6 STR 301 A 1 HETATM 8 C C7 STR . . . B 2 -20.185 -45.362 25.927 1 56.42 ? C7 STR 301 A 1 HETATM 9 C C8 STR . . . B 2 -20.717 -44.028 25.428 1 50.54 ? C8 STR 301 A 1 HETATM 10 C C9 STR . . . B 2 -21.159 -44.195 23.967 1 52.56 ? C9 STR 301 A 1 HETATM 11 C C10 STR . . . B 2 -22.317 -45.2 23.881 1 56.28 ? C10 STR 301 A 1 HETATM 12 C C11 STR . . . B 2 -21.559 -42.865 23.384 1 51.77 ? C11 STR 301 A 1 HETATM 13 C C12 STR . . . B 2 -20.457 -41.84 23.416 1 50.16 ? C12 STR 301 A 1 HETATM 14 C C13 STR . . . B 2 -19.966 -41.677 24.881 1 50.37 ? C13 STR 301 A 1 HETATM 15 C C14 STR . . . B 2 -19.563 -43.038 25.415 1 49.54 ? C14 STR 301 A 1 HETATM 16 C C15 STR . . . B 2 -18.949 -42.74 26.811 1 48.57 ? C15 STR 301 A 1 HETATM 17 C C16 STR . . . B 2 -18.242 -41.319 26.497 1 49.15 ? C16 STR 301 A 1 HETATM 18 C C17 STR . . . B 2 -18.678 -40.952 25.063 1 50.38 ? C17 STR 301 A 1 HETATM 19 C C18 STR . . . B 2 -21.055 -41.038 25.754 1 44.33 ? C18 STR 301 A 1 HETATM 20 C C19 STR . . . B 2 -23.545 -44.63 24.587 1 58.35 ? C19 STR 301 A 1 HETATM 21 C C20 STR . . . B 2 -18.731 -39.409 24.888 1 50.31 ? C20 STR 301 A 1 HETATM 22 O O20 STR . . . B 2 -18.796 -38.701 25.837 1 52.35 ? O20 STR 301 A 1 HETATM 23 C C21 STR . . . B 2 -18.65 -38.787 23.5 1 52.16 ? C21 STR 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #