data_8W4L # _model_server_result.job_id -HEKhYHRPFmWkDTJ2FlCFQ _model_server_result.datetime_utc '2024-11-28 15:15:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8W4L # _exptl.entry_id 8W4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W4L _cell.length_a 151.964 _cell.length_b 151.964 _cell.length_c 113.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 2 7 6 SIA GAL C2 O2 . O6 HO6 . sing 7 ? 2 8 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 2 9 8 NAG MAN C1 O1 . O2 HO2 . sing 9 ? 2 10 1 FUC NAG C1 O1 . O6 HO6 . sing 10 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 13 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 14 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 15 ? 3 7 3 MAN BMA C1 O1 . O6 HO6 . sing 16 ? 3 8 7 NAG MAN C1 O1 . O2 HO2 . sing 17 ? 3 9 8 GAL NAG C1 O1 . O4 HO4 . sing 18 ? 3 10 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1445 NAG 2 n C NAG 2 C 2 NAG A 1446 NAG 2 n C BMA 3 C 3 BMA A 1447 BMA 2 n C MAN 4 C 4 MAN A 1450 MAN 2 n C NAG 5 C 5 NAG A 1451 NAG 2 n C GAL 6 C 6 GAL A 1452 GAL 2 n C SIA 7 C 7 SIA A 1453 SIA 2 n C MAN 8 C 8 MAN A 1448 MAN 2 n C NAG 9 C 9 NAG A 1449 NAG 2 n C FUC 10 C 10 FUC A 1454 FUC 3 n D NAG 1 D 1 NAG B 1445 NAG 3 n D NAG 2 D 2 NAG B 1446 NAG 3 n D BMA 3 D 3 BMA B 1447 BMA 3 n D MAN 4 D 4 MAN B 1448 MAN 3 n D NAG 5 D 5 NAG B 1449 NAG 3 n D GAL 6 D 6 GAL B 1450 GAL 3 n D MAN 7 D 7 MAN B 1451 MAN 3 n D NAG 8 D 8 NAG B 1452 NAG 3 n D GAL 9 D 9 GAL B 1453 GAL 3 n D FUC 10 D 10 FUC B 1454 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 261 1_555 A SG CYS 97 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 143 A CYS 367 1_555 A SG CYS 201 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 37 B CYS 261 1_555 B SG CYS 97 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 143 B CYS 367 1_555 B SG CYS 201 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 73 A ASN 297 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 73 B ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale8 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 C O4 NAG . C NAG 5 1_555 C C1 GAL . C GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 C O6 GAL . C GAL 6 1_555 C C2 SIA . C SIA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale11 C O2 MAN . C MAN 8 1_555 C C1 NAG . C NAG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale16 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale17 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale18 D O4 NAG . D NAG 5 1_555 D C1 GAL . D GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale19 D O2 MAN . D MAN 7 1_555 D C1 NAG . D NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale20 D O4 NAG . D NAG 8 1_555 D C1 GAL . D GAL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8W4L _atom_sites.fract_transf_matrix[1][1] 0.006581 _atom_sites.fract_transf_matrix[1][2] 0.003799 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CL A 1 501 1455 CL CL . F 4 CL B 1 501 1455 CL CL . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 37.681 _atom_site.Cartn_y -1.211 _atom_site.Cartn_z -0.512 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #