data_8W4M # _model_server_result.job_id 2AR2u-a3qhWkZvJIcecBmg _model_server_result.datetime_utc '2024-10-10 17:11:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8W4M # _exptl.entry_id 8W4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W4M _cell.length_a 50.088 _cell.length_b 147.668 _cell.length_c 75.198 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 2 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 2 8 7 NAG MAN C1 O1 . O2 HO2 . sing 8 ? 2 9 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 2 n B BMA 3 B 3 BMA B 3 BMA 2 n B MAN 4 B 4 MAN B 4 MAN 2 n B NAG 5 B 5 NAG B 5 NAG 2 n B GAL 6 B 6 GAL B 6 GAL 2 n B MAN 7 B 7 MAN B 7 MAN 2 n B NAG 8 B 8 NAG B 8 NAG 2 n B FUC 9 B 9 FUC B 9 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 261 1_555 A SG CYS 97 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 143 A CYS 367 1_555 A SG CYS 201 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 73 A ASN 297 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O2 MAN . B MAN 4 1_555 B C1 NAG . B NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale8 B O4 NAG . B NAG 5 1_555 B C1 GAL . B GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 B O2 MAN . B MAN 7 1_555 B C1 NAG . B NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? metalc ? metalc1 A OE1 GLU 59 A GLU 283 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc2 A NE2 HIS 61 A HIS 285 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc3 A NE2 HIS 86 A HIS 310 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A O HIS 86 A HIS 310 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc5 A OD2 ASP 88 A ASP 312 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 A O TRP 89 A TRP 313 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc7 A OE1 GLU 94 A GLU 318 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc8 A OE2 GLU 94 A GLU 318 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc9 A OE2 GLU 94 A GLU 318 1_555 D ZN ZN . A ZN 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc10 A OH TYR 95 A TYR 319 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc11 A OE1 GLU 121 A GLU 345 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc12 A NE2 HIS 209 A HIS 433 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc13 A NE2 HIS 211 A HIS 435 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc14 C ZN ZN . A ZN 501 1_555 M O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 C ZN ZN . A ZN 501 1_555 M O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc16 F ZN ZN . A ZN 504 1_555 M O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc17 K ZN ZN . A ZN 509 1_555 M O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8W4M _atom_sites.fract_transf_matrix[1][1] 0.019965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 1 ZN ZN . D 3 ZN A 1 502 2 ZN ZN . E 3 ZN A 1 503 3 ZN ZN . F 3 ZN A 1 504 4 ZN ZN . G 3 ZN A 1 505 5 ZN ZN . H 3 ZN A 1 506 6 ZN ZN . I 3 ZN A 1 507 7 ZN ZN . J 3 ZN A 1 508 8 ZN ZN . K 3 ZN A 1 509 9 ZN ZN . L 3 ZN A 1 510 10 ZN ZN . M 4 HOH A 1 601 90 HOH HOH . M 4 HOH A 2 602 65 HOH HOH . M 4 HOH A 3 603 84 HOH HOH . M 4 HOH A 4 604 18 HOH HOH . M 4 HOH A 5 605 109 HOH HOH . M 4 HOH A 6 606 75 HOH HOH . M 4 HOH A 7 607 82 HOH HOH . M 4 HOH A 8 608 88 HOH HOH . M 4 HOH A 9 609 47 HOH HOH . M 4 HOH A 10 610 117 HOH HOH . M 4 HOH A 11 611 54 HOH HOH . M 4 HOH A 12 612 63 HOH HOH . M 4 HOH A 13 613 121 HOH HOH . M 4 HOH A 14 614 67 HOH HOH . M 4 HOH A 15 615 4 HOH HOH . M 4 HOH A 16 616 19 HOH HOH . M 4 HOH A 17 617 103 HOH HOH . M 4 HOH A 18 618 11 HOH HOH . M 4 HOH A 19 619 35 HOH HOH . M 4 HOH A 20 620 42 HOH HOH . M 4 HOH A 21 621 27 HOH HOH . M 4 HOH A 22 622 12 HOH HOH . M 4 HOH A 23 623 53 HOH HOH . M 4 HOH A 24 624 14 HOH HOH . M 4 HOH A 25 625 10 HOH HOH . M 4 HOH A 26 626 29 HOH HOH . M 4 HOH A 27 627 9 HOH HOH . M 4 HOH A 28 628 39 HOH HOH . M 4 HOH A 29 629 30 HOH HOH . M 4 HOH A 30 630 50 HOH HOH . M 4 HOH A 31 631 77 HOH HOH . M 4 HOH A 32 632 95 HOH HOH . M 4 HOH A 33 633 22 HOH HOH . M 4 HOH A 34 634 89 HOH HOH . M 4 HOH A 35 635 25 HOH HOH . M 4 HOH A 36 636 59 HOH HOH . M 4 HOH A 37 637 7 HOH HOH . M 4 HOH A 38 638 13 HOH HOH . M 4 HOH A 39 639 112 HOH HOH . M 4 HOH A 40 640 40 HOH HOH . M 4 HOH A 41 641 56 HOH HOH . M 4 HOH A 42 642 106 HOH HOH . M 4 HOH A 43 643 93 HOH HOH . M 4 HOH A 44 644 1 HOH HOH . M 4 HOH A 45 645 8 HOH HOH . M 4 HOH A 46 646 5 HOH HOH . M 4 HOH A 47 647 80 HOH HOH . M 4 HOH A 48 648 43 HOH HOH . M 4 HOH A 49 649 37 HOH HOH . M 4 HOH A 50 650 92 HOH HOH . M 4 HOH A 51 651 105 HOH HOH . M 4 HOH A 52 652 83 HOH HOH . M 4 HOH A 53 653 96 HOH HOH . M 4 HOH A 54 654 86 HOH HOH . M 4 HOH A 55 655 98 HOH HOH . M 4 HOH A 56 656 74 HOH HOH . M 4 HOH A 57 657 58 HOH HOH . M 4 HOH A 58 658 61 HOH HOH . M 4 HOH A 59 659 24 HOH HOH . M 4 HOH A 60 660 49 HOH HOH . M 4 HOH A 61 661 26 HOH HOH . M 4 HOH A 62 662 6 HOH HOH . M 4 HOH A 63 663 20 HOH HOH . M 4 HOH A 64 664 15 HOH HOH . M 4 HOH A 65 665 71 HOH HOH . M 4 HOH A 66 666 28 HOH HOH . M 4 HOH A 67 667 48 HOH HOH . M 4 HOH A 68 668 33 HOH HOH . M 4 HOH A 69 669 44 HOH HOH . M 4 HOH A 70 670 60 HOH HOH . M 4 HOH A 71 671 46 HOH HOH . M 4 HOH A 72 672 23 HOH HOH . M 4 HOH A 73 673 115 HOH HOH . M 4 HOH A 74 674 32 HOH HOH . M 4 HOH A 75 675 64 HOH HOH . M 4 HOH A 76 676 107 HOH HOH . M 4 HOH A 77 677 94 HOH HOH . M 4 HOH A 78 678 68 HOH HOH . M 4 HOH A 79 679 45 HOH HOH . M 4 HOH A 80 680 16 HOH HOH . M 4 HOH A 81 681 72 HOH HOH . M 4 HOH A 82 682 3 HOH HOH . M 4 HOH A 83 683 118 HOH HOH . M 4 HOH A 84 684 85 HOH HOH . M 4 HOH A 85 685 17 HOH HOH . M 4 HOH A 86 686 31 HOH HOH . M 4 HOH A 87 687 100 HOH HOH . M 4 HOH A 88 688 87 HOH HOH . M 4 HOH A 89 689 66 HOH HOH . M 4 HOH A 90 690 116 HOH HOH . M 4 HOH A 91 691 52 HOH HOH . M 4 HOH A 92 692 97 HOH HOH . M 4 HOH A 93 693 113 HOH HOH . M 4 HOH A 94 694 81 HOH HOH . M 4 HOH A 95 695 104 HOH HOH . M 4 HOH A 96 696 21 HOH HOH . M 4 HOH A 97 697 2 HOH HOH . M 4 HOH A 98 698 99 HOH HOH . M 4 HOH A 99 699 114 HOH HOH . M 4 HOH A 100 700 78 HOH HOH . M 4 HOH A 101 701 76 HOH HOH . M 4 HOH A 102 702 55 HOH HOH . M 4 HOH A 103 703 38 HOH HOH . M 4 HOH A 104 704 119 HOH HOH . M 4 HOH A 105 705 108 HOH HOH . M 4 HOH A 106 706 70 HOH HOH . M 4 HOH A 107 707 51 HOH HOH . M 4 HOH A 108 708 110 HOH HOH . M 4 HOH A 109 709 91 HOH HOH . M 4 HOH A 110 710 122 HOH HOH . M 4 HOH A 111 711 41 HOH HOH . M 4 HOH A 112 712 101 HOH HOH . M 4 HOH A 113 713 102 HOH HOH . M 4 HOH A 114 714 120 HOH HOH . M 4 HOH A 115 715 62 HOH HOH . M 4 HOH A 116 716 79 HOH HOH . M 4 HOH A 117 717 111 HOH HOH . M 4 HOH A 118 718 69 HOH HOH . M 4 HOH A 119 719 36 HOH HOH . M 4 HOH A 120 720 34 HOH HOH . M 4 HOH A 121 721 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.061 _atom_site.Cartn_y -21.508 _atom_site.Cartn_z 18.37 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 86.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #