data_8W4Q # _model_server_result.job_id ifLMVoGjmYElJRuL0YB1vA _model_server_result.datetime_utc '2024-11-05 00:06:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":503}' # _entry.id 8W4Q # _exptl.entry_id 8W4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.77 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W4Q _cell.length_a 57.509 _cell.length_b 79.99 _cell.length_c 162.723 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 100 A HIS 164 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A NE2 HIS 136 A HIS 200 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 A OD1 ASP 137 A ASP 201 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc4 A OD2 ASP 137 A ASP 201 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A OD1 ASP 254 A ASP 318 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 C MG MG . A MG 501 1_555 O O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc7 C MG MG . A MG 501 1_555 O O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 C MG MG . A MG 501 1_555 O O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc9 C MG MG . A MG 501 1_555 O O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc10 C MG MG . A MG 501 1_555 O O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc11 D ZN ZN . A ZN 502 1_555 O O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc12 D ZN ZN . A ZN 502 1_555 O O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc13 B NE2 HIS 100 B HIS 164 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc14 B NE2 HIS 136 B HIS 200 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc15 B OD1 ASP 137 B ASP 201 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc16 B OD2 ASP 137 B ASP 201 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 B OD1 ASP 254 B ASP 318 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc18 I MG MG . B MG 501 1_555 P O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc19 I MG MG . B MG 501 1_555 P O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc20 I MG MG . B MG 501 1_555 P O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc21 I MG MG . B MG 501 1_555 P O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc22 I MG MG . B MG 501 1_555 P O HOH . B HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc23 J ZN ZN . B ZN 502 1_555 P O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc24 J ZN ZN . B ZN 502 1_555 P O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C19 H12 Cl N3 O2' _chem_comp.formula_weight 349.77 _chem_comp.id 3NG _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3NG doub 1 n y C1 N9 3NG sing 2 n y C1 C6 3NG sing 3 n y C2 C3 3NG sing 4 n y C8 C2 3NG sing 5 n y C3 C4 3NG doub 6 n y C3 H3 3NG sing 7 n n C4 C5 3NG sing 8 n y C4 H4 3NG sing 9 n n C5 C6 3NG doub 10 n y C5 C23 3NG sing 11 n n C6 H6 3NG sing 12 n n C14 C7 3NG sing 13 n y C10 C7 3NG sing 14 n y C7 C8 3NG doub 15 n y C8 C13 3NG sing 16 n y C10 N9 3NG doub 17 n y N15 C10 3NG sing 18 n n C14 C11 3NG doub 19 n y C11 N12 3NG sing 20 n y C11 H11 3NG sing 21 n n N12 C13 3NG doub 22 n y C13 H13 3NG sing 23 n n C14 H14 3NG sing 24 n n C16 N15 3NG sing 25 n n N15 HN15 3NG sing 26 n n C21 C16 3NG doub 27 n y C16 C17 3NG sing 28 n y C18 C17 3NG doub 29 n y C17 H17 3NG sing 30 n n C19 C18 3NG sing 31 n y C18 CL22 3NG sing 32 n n C20 C19 3NG doub 33 n y C19 H19 3NG sing 34 n n C20 C21 3NG sing 35 n y C20 H20 3NG sing 36 n n C21 H21 3NG sing 37 n n O24 C23 3NG doub 38 n n C23 O25 3NG sing 39 n n O25 HO25 3NG sing 40 n n # _atom_sites.entry_id 8W4Q _atom_sites.fract_transf_matrix[1][1] 0.017389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 502 MG MG . D 3 ZN A 1 502 602 ZN ZN . E 4 3NG A 1 503 702 3NG DRG . F 5 EDO A 1 504 1 EDO EDO . G 5 EDO A 1 505 2 EDO EDO . H 5 EDO A 1 506 5 EDO EDO . I 2 MG B 1 501 501 MG MG . J 3 ZN B 1 502 601 ZN ZN . K 4 3NG B 1 503 701 3NG DRG . L 5 EDO B 1 504 3 EDO EDO . M 5 EDO B 1 505 6 EDO EDO . N 5 EDO B 1 506 7 EDO EDO . O 6 HOH A 1 601 73 HOH HOH . O 6 HOH A 2 602 1 HOH HOH . O 6 HOH A 3 603 104 HOH HOH . O 6 HOH A 4 604 6 HOH HOH . O 6 HOH A 5 605 8 HOH HOH . O 6 HOH A 6 606 20 HOH HOH . O 6 HOH A 7 607 26 HOH HOH . O 6 HOH A 8 608 76 HOH HOH . O 6 HOH A 9 609 48 HOH HOH . O 6 HOH A 10 610 95 HOH HOH . O 6 HOH A 11 611 29 HOH HOH . O 6 HOH A 12 612 22 HOH HOH . O 6 HOH A 13 613 19 HOH HOH . O 6 HOH A 14 614 80 HOH HOH . O 6 HOH A 15 615 17 HOH HOH . O 6 HOH A 16 616 34 HOH HOH . O 6 HOH A 17 617 47 HOH HOH . O 6 HOH A 18 618 90 HOH HOH . O 6 HOH A 19 619 86 HOH HOH . O 6 HOH A 20 620 83 HOH HOH . O 6 HOH A 21 621 13 HOH HOH . O 6 HOH A 22 622 4 HOH HOH . O 6 HOH A 23 623 62 HOH HOH . O 6 HOH A 24 624 60 HOH HOH . O 6 HOH A 25 625 2 HOH HOH . O 6 HOH A 26 626 54 HOH HOH . O 6 HOH A 27 627 52 HOH HOH . O 6 HOH A 28 628 9 HOH HOH . O 6 HOH A 29 629 36 HOH HOH . O 6 HOH A 30 630 46 HOH HOH . O 6 HOH A 31 631 65 HOH HOH . O 6 HOH A 32 632 107 HOH HOH . O 6 HOH A 33 633 64 HOH HOH . O 6 HOH A 34 634 55 HOH HOH . O 6 HOH A 35 635 108 HOH HOH . O 6 HOH A 36 636 44 HOH HOH . O 6 HOH A 37 637 78 HOH HOH . O 6 HOH A 38 638 84 HOH HOH . O 6 HOH A 39 639 61 HOH HOH . O 6 HOH A 40 640 3 HOH HOH . O 6 HOH A 41 641 105 HOH HOH . O 6 HOH A 42 642 32 HOH HOH . O 6 HOH A 43 643 101 HOH HOH . O 6 HOH A 44 644 93 HOH HOH . O 6 HOH A 45 645 66 HOH HOH . O 6 HOH A 46 646 39 HOH HOH . O 6 HOH A 47 647 45 HOH HOH . O 6 HOH A 48 648 109 HOH HOH . O 6 HOH A 49 649 33 HOH HOH . O 6 HOH A 50 650 59 HOH HOH . O 6 HOH A 51 651 35 HOH HOH . O 6 HOH A 52 652 74 HOH HOH . O 6 HOH A 53 653 96 HOH HOH . O 6 HOH A 54 654 99 HOH HOH . O 6 HOH A 55 655 24 HOH HOH . O 6 HOH A 56 656 68 HOH HOH . O 6 HOH A 57 657 12 HOH HOH . O 6 HOH A 58 658 72 HOH HOH . O 6 HOH A 59 659 49 HOH HOH . O 6 HOH A 60 660 92 HOH HOH . O 6 HOH A 61 661 100 HOH HOH . O 6 HOH A 62 662 42 HOH HOH . O 6 HOH A 63 663 103 HOH HOH . O 6 HOH A 64 664 91 HOH HOH . P 6 HOH B 1 601 98 HOH HOH . P 6 HOH B 2 602 21 HOH HOH . P 6 HOH B 3 603 69 HOH HOH . P 6 HOH B 4 604 5 HOH HOH . P 6 HOH B 5 605 14 HOH HOH . P 6 HOH B 6 606 30 HOH HOH . P 6 HOH B 7 607 75 HOH HOH . P 6 HOH B 8 608 10 HOH HOH . P 6 HOH B 9 609 43 HOH HOH . P 6 HOH B 10 610 18 HOH HOH . P 6 HOH B 11 611 53 HOH HOH . P 6 HOH B 12 612 51 HOH HOH . P 6 HOH B 13 613 71 HOH HOH . P 6 HOH B 14 614 31 HOH HOH . P 6 HOH B 15 615 7 HOH HOH . P 6 HOH B 16 616 106 HOH HOH . P 6 HOH B 17 617 25 HOH HOH . P 6 HOH B 18 618 15 HOH HOH . P 6 HOH B 19 619 63 HOH HOH . P 6 HOH B 20 620 56 HOH HOH . P 6 HOH B 21 621 11 HOH HOH . P 6 HOH B 22 622 57 HOH HOH . P 6 HOH B 23 623 37 HOH HOH . P 6 HOH B 24 624 77 HOH HOH . P 6 HOH B 25 625 79 HOH HOH . P 6 HOH B 26 626 41 HOH HOH . P 6 HOH B 27 627 70 HOH HOH . P 6 HOH B 28 628 50 HOH HOH . P 6 HOH B 29 629 27 HOH HOH . P 6 HOH B 30 630 87 HOH HOH . P 6 HOH B 31 631 81 HOH HOH . P 6 HOH B 32 632 82 HOH HOH . P 6 HOH B 33 633 40 HOH HOH . P 6 HOH B 34 634 16 HOH HOH . P 6 HOH B 35 635 28 HOH HOH . P 6 HOH B 36 636 38 HOH HOH . P 6 HOH B 37 637 67 HOH HOH . P 6 HOH B 38 638 85 HOH HOH . P 6 HOH B 39 639 58 HOH HOH . P 6 HOH B 40 640 23 HOH HOH . P 6 HOH B 41 641 88 HOH HOH . P 6 HOH B 42 642 102 HOH HOH . P 6 HOH B 43 643 97 HOH HOH . P 6 HOH B 44 644 89 HOH HOH . P 6 HOH B 45 645 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3NG . . . K 4 14.031 85.451 67.162 1 45.83 ? C1 3NG 503 B 1 HETATM 2 C C2 3NG . . . K 4 14.434 85.923 68.427 1 45.18 ? C2 3NG 503 B 1 HETATM 3 C C3 3NG . . . K 4 15.731 86.46 68.548 1 44.48 ? C3 3NG 503 B 1 HETATM 4 C C4 3NG . . . K 4 16.571 86.523 67.476 1 44.07 ? C4 3NG 503 B 1 HETATM 5 C C5 3NG . . . K 4 16.164 86.059 66.218 1 44.13 ? C5 3NG 503 B 1 HETATM 6 C C6 3NG . . . K 4 14.914 85.525 66.065 1 44.77 ? C6 3NG 503 B 1 HETATM 7 C C7 3NG . . . K 4 12.22 85.27 69.247 1 46.99 ? C7 3NG 503 B 1 HETATM 8 C C8 3NG . . . K 4 13.491 85.827 69.512 1 45.81 ? C8 3NG 503 B 1 HETATM 9 N N9 3NG . . . K 4 12.789 84.911 66.946 1 47.9 ? N9 3NG 503 B 1 HETATM 10 C C10 3NG . . . K 4 11.917 84.823 67.909 1 50.17 ? C10 3NG 503 B 1 HETATM 11 C C11 3NG . . . K 4 11.677 85.635 71.535 1 44.89 ? C11 3NG 503 B 1 HETATM 12 N N12 3NG . . . K 4 12.901 86.178 71.814 1 44.96 ? N12 3NG 503 B 1 HETATM 13 C C13 3NG . . . K 4 13.784 86.271 70.826 1 45.52 ? C13 3NG 503 B 1 HETATM 14 C C14 3NG . . . K 4 11.301 85.181 70.31 1 45.6 ? C14 3NG 503 B 1 HETATM 15 N N15 3NG . . . K 4 10.693 84.254 67.616 1 56.2 ? N15 3NG 503 B 1 HETATM 16 C C16 3NG . . . K 4 10.241 83.547 66.479 1 61.9 ? C16 3NG 503 B 1 HETATM 17 C C17 3NG . . . K 4 9.073 82.787 66.59 1 64.55 ? C17 3NG 503 B 1 HETATM 18 C C18 3NG . . . K 4 8.621 82.087 65.486 1 67.96 ? C18 3NG 503 B 1 HETATM 19 C C19 3NG . . . K 4 9.277 82.126 64.278 1 66.36 ? C19 3NG 503 B 1 HETATM 20 C C20 3NG . . . K 4 10.422 82.882 64.175 1 65.69 ? C20 3NG 503 B 1 HETATM 21 C C21 3NG . . . K 4 10.904 83.59 65.259 1 64.39 ? C21 3NG 503 B 1 HETATM 22 CL CL22 3NG . . . K 4 7.17 81.138 65.634 1 71.96 ? CL22 3NG 503 B 1 HETATM 23 C C23 3NG . . . K 4 17.091 86.135 65.043 1 43.8 ? C23 3NG 503 B 1 HETATM 24 O O24 3NG . . . K 4 16.653 85.761 63.936 1 42.76 -1 O24 3NG 503 B 1 HETATM 25 O O25 3NG . . . K 4 18.24 86.583 65.233 1 44.66 ? O25 3NG 503 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #