data_8W4Q
#
_model_server_result.job_id            DRVqc1pQexlk2Rea9lKX7g 
_model_server_result.datetime_utc      '2024-11-04 23:58:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w4q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":505}' 
#
_entry.id    8W4Q 
#
_exptl.entry_id    8W4Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W4Q 
_cell.length_a            57.509 
_cell.length_b            79.99 
_cell.length_c            162.723 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W4Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 100 A HIS 164 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc2 A NE2 HIS 136 A HIS 200 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc3 A OD1 ASP 137 A ASP 201 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc4 A OD2 ASP 137 A ASP 201 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 A OD1 ASP 254 A ASP 318 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc6 C MG MG . A MG 501 1_555 O O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc7 C MG MG . A MG 501 1_555 O O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc8 C MG MG . A MG 501 1_555 O O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc9 C MG MG . A MG 501 1_555 O O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc10 C MG MG . A MG 501 1_555 O O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc11 D ZN ZN . A ZN 502 1_555 O O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc12 D ZN ZN . A ZN 502 1_555 O O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc13 B NE2 HIS 100 B HIS 164 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc14 B NE2 HIS 136 B HIS 200 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc15 B OD1 ASP 137 B ASP 201 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc16 B OD2 ASP 137 B ASP 201 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc17 B OD1 ASP 254 B ASP 318 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc18 I MG MG . B MG 501 1_555 P O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc19 I MG MG . B MG 501 1_555 P O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc20 I MG MG . B MG 501 1_555 P O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc21 I MG MG . B MG 501 1_555 P O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc22 I MG MG . B MG 501 1_555 P O HOH . B HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc23 J ZN ZN . B ZN 502 1_555 P O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc24 J ZN ZN . B ZN 502 1_555 P O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 123 n n 
C1 C2 EDO sing 124 n n 
C1 H11 EDO sing 125 n n 
C1 H12 EDO sing 126 n n 
O1 HO1 EDO sing 127 n n 
C2 O2 EDO sing 128 n n 
C2 H21 EDO sing 129 n n 
C2 H22 EDO sing 130 n n 
O2 HO2 EDO sing 131 n n 
#
_atom_sites.entry_id                     8W4Q 
_atom_sites.fract_transf_matrix[1][1]    0.017389 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006145 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 502 MG MG . 
D 3 ZN A 1 502 602 ZN ZN . 
E 4 3NG A 1 503 702 3NG DRG . 
F 5 EDO A 1 504 1 EDO EDO . 
G 5 EDO A 1 505 2 EDO EDO . 
H 5 EDO A 1 506 5 EDO EDO . 
I 2 MG B 1 501 501 MG MG . 
J 3 ZN B 1 502 601 ZN ZN . 
K 4 3NG B 1 503 701 3NG DRG . 
L 5 EDO B 1 504 3 EDO EDO . 
M 5 EDO B 1 505 6 EDO EDO . 
N 5 EDO B 1 506 7 EDO EDO . 
O 6 HOH A 1 601 73 HOH HOH . 
O 6 HOH A 2 602 1 HOH HOH . 
O 6 HOH A 3 603 104 HOH HOH . 
O 6 HOH A 4 604 6 HOH HOH . 
O 6 HOH A 5 605 8 HOH HOH . 
O 6 HOH A 6 606 20 HOH HOH . 
O 6 HOH A 7 607 26 HOH HOH . 
O 6 HOH A 8 608 76 HOH HOH . 
O 6 HOH A 9 609 48 HOH HOH . 
O 6 HOH A 10 610 95 HOH HOH . 
O 6 HOH A 11 611 29 HOH HOH . 
O 6 HOH A 12 612 22 HOH HOH . 
O 6 HOH A 13 613 19 HOH HOH . 
O 6 HOH A 14 614 80 HOH HOH . 
O 6 HOH A 15 615 17 HOH HOH . 
O 6 HOH A 16 616 34 HOH HOH . 
O 6 HOH A 17 617 47 HOH HOH . 
O 6 HOH A 18 618 90 HOH HOH . 
O 6 HOH A 19 619 86 HOH HOH . 
O 6 HOH A 20 620 83 HOH HOH . 
O 6 HOH A 21 621 13 HOH HOH . 
O 6 HOH A 22 622 4 HOH HOH . 
O 6 HOH A 23 623 62 HOH HOH . 
O 6 HOH A 24 624 60 HOH HOH . 
O 6 HOH A 25 625 2 HOH HOH . 
O 6 HOH A 26 626 54 HOH HOH . 
O 6 HOH A 27 627 52 HOH HOH . 
O 6 HOH A 28 628 9 HOH HOH . 
O 6 HOH A 29 629 36 HOH HOH . 
O 6 HOH A 30 630 46 HOH HOH . 
O 6 HOH A 31 631 65 HOH HOH . 
O 6 HOH A 32 632 107 HOH HOH . 
O 6 HOH A 33 633 64 HOH HOH . 
O 6 HOH A 34 634 55 HOH HOH . 
O 6 HOH A 35 635 108 HOH HOH . 
O 6 HOH A 36 636 44 HOH HOH . 
O 6 HOH A 37 637 78 HOH HOH . 
O 6 HOH A 38 638 84 HOH HOH . 
O 6 HOH A 39 639 61 HOH HOH . 
O 6 HOH A 40 640 3 HOH HOH . 
O 6 HOH A 41 641 105 HOH HOH . 
O 6 HOH A 42 642 32 HOH HOH . 
O 6 HOH A 43 643 101 HOH HOH . 
O 6 HOH A 44 644 93 HOH HOH . 
O 6 HOH A 45 645 66 HOH HOH . 
O 6 HOH A 46 646 39 HOH HOH . 
O 6 HOH A 47 647 45 HOH HOH . 
O 6 HOH A 48 648 109 HOH HOH . 
O 6 HOH A 49 649 33 HOH HOH . 
O 6 HOH A 50 650 59 HOH HOH . 
O 6 HOH A 51 651 35 HOH HOH . 
O 6 HOH A 52 652 74 HOH HOH . 
O 6 HOH A 53 653 96 HOH HOH . 
O 6 HOH A 54 654 99 HOH HOH . 
O 6 HOH A 55 655 24 HOH HOH . 
O 6 HOH A 56 656 68 HOH HOH . 
O 6 HOH A 57 657 12 HOH HOH . 
O 6 HOH A 58 658 72 HOH HOH . 
O 6 HOH A 59 659 49 HOH HOH . 
O 6 HOH A 60 660 92 HOH HOH . 
O 6 HOH A 61 661 100 HOH HOH . 
O 6 HOH A 62 662 42 HOH HOH . 
O 6 HOH A 63 663 103 HOH HOH . 
O 6 HOH A 64 664 91 HOH HOH . 
P 6 HOH B 1 601 98 HOH HOH . 
P 6 HOH B 2 602 21 HOH HOH . 
P 6 HOH B 3 603 69 HOH HOH . 
P 6 HOH B 4 604 5 HOH HOH . 
P 6 HOH B 5 605 14 HOH HOH . 
P 6 HOH B 6 606 30 HOH HOH . 
P 6 HOH B 7 607 75 HOH HOH . 
P 6 HOH B 8 608 10 HOH HOH . 
P 6 HOH B 9 609 43 HOH HOH . 
P 6 HOH B 10 610 18 HOH HOH . 
P 6 HOH B 11 611 53 HOH HOH . 
P 6 HOH B 12 612 51 HOH HOH . 
P 6 HOH B 13 613 71 HOH HOH . 
P 6 HOH B 14 614 31 HOH HOH . 
P 6 HOH B 15 615 7 HOH HOH . 
P 6 HOH B 16 616 106 HOH HOH . 
P 6 HOH B 17 617 25 HOH HOH . 
P 6 HOH B 18 618 15 HOH HOH . 
P 6 HOH B 19 619 63 HOH HOH . 
P 6 HOH B 20 620 56 HOH HOH . 
P 6 HOH B 21 621 11 HOH HOH . 
P 6 HOH B 22 622 57 HOH HOH . 
P 6 HOH B 23 623 37 HOH HOH . 
P 6 HOH B 24 624 77 HOH HOH . 
P 6 HOH B 25 625 79 HOH HOH . 
P 6 HOH B 26 626 41 HOH HOH . 
P 6 HOH B 27 627 70 HOH HOH . 
P 6 HOH B 28 628 50 HOH HOH . 
P 6 HOH B 29 629 27 HOH HOH . 
P 6 HOH B 30 630 87 HOH HOH . 
P 6 HOH B 31 631 81 HOH HOH . 
P 6 HOH B 32 632 82 HOH HOH . 
P 6 HOH B 33 633 40 HOH HOH . 
P 6 HOH B 34 634 16 HOH HOH . 
P 6 HOH B 35 635 28 HOH HOH . 
P 6 HOH B 36 636 38 HOH HOH . 
P 6 HOH B 37 637 67 HOH HOH . 
P 6 HOH B 38 638 85 HOH HOH . 
P 6 HOH B 39 639 58 HOH HOH . 
P 6 HOH B 40 640 23 HOH HOH . 
P 6 HOH B 41 641 88 HOH HOH . 
P 6 HOH B 42 642 102 HOH HOH . 
P 6 HOH B 43 643 97 HOH HOH . 
P 6 HOH B 44 644 89 HOH HOH . 
P 6 HOH B 45 645 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 5 16.025 85.945 74.278 1 53.76 ? C1 EDO 505 B 1 
HETATM 2 O O1 EDO . . . M 5 17.081 86.845 74.63 1 54.54 ? O1 EDO 505 B 1 
HETATM 3 C C2 EDO . . . M 5 16.463 85.142 73.059 1 53.31 ? C2 EDO 505 B 1 
HETATM 4 O O2 EDO . . . M 5 16.833 86.055 72.02 1 53.48 ? O2 EDO 505 B 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#