data_8W4V # _model_server_result.job_id fZOOahuBkgxkVCiipK30Qg _model_server_result.datetime_utc '2025-06-28 14:44:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8W4V # _exptl.entry_id 8W4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.366 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-[(dimethylamino)methyl]phenyl]sulfanylbenzene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W4V _cell.length_a 65.411 _cell.length_b 88.599 _cell.length_c 99.651 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 301 1_555 D O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 B MG MG . A MG 301 1_555 D O HOH . A HOH 421 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 B MG MG . A MG 301 1_555 D O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 B MG MG . A MG 301 1_555 D O HOH . A HOH 520 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 B MG MG . A MG 301 1_555 D O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc6 B MG MG . A MG 301 1_555 D O HOH . A HOH 588 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C15 H17 N O2 S' _chem_comp.formula_weight 275.366 _chem_comp.id Q9O _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-[(dimethylamino)methyl]phenyl]sulfanylbenzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C13 Q9O sing 264 n n C13 C12 Q9O doub 265 n y C13 C14 Q9O sing 266 n y C12 C11 Q9O sing 267 n y C14 C15 Q9O doub 268 n y C7 C8 Q9O doub 269 n y C7 C6 Q9O sing 270 n y C11 O2 Q9O sing 271 n n C11 C10 Q9O doub 272 n y C15 C10 Q9O sing 273 n y C8 C9 Q9O sing 274 n y C10 S1 Q9O sing 275 n n C6 C5 Q9O doub 276 n y C9 S1 Q9O sing 277 n n C9 C4 Q9O doub 278 n y C5 C4 Q9O sing 279 n y C4 C3 Q9O sing 280 n n C3 N1 Q9O sing 281 n n C1 N1 Q9O sing 282 n n N1 C2 Q9O sing 283 n n C5 H2 Q9O sing 284 n n C6 H3 Q9O sing 285 n n C7 H4 Q9O sing 286 n n C8 H5 Q9O sing 287 n n C15 H6 Q9O sing 288 n n C1 H7 Q9O sing 289 n n C1 H8 Q9O sing 290 n n C1 H9 Q9O sing 291 n n C12 H10 Q9O sing 292 n n C14 H11 Q9O sing 293 n n C2 H12 Q9O sing 294 n n C2 H13 Q9O sing 295 n n C2 H14 Q9O sing 296 n n C3 H15 Q9O sing 297 n n C3 H16 Q9O sing 298 n n O1 H17 Q9O sing 299 n n O2 H18 Q9O sing 300 n n # _atom_sites.entry_id 8W4V _atom_sites.fract_transf_matrix[1][1] 0.015288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 302 MG MG . C 3 Q9O A 1 302 601 Q9O LIG . D 4 HOH A 1 401 574 HOH HOH . D 4 HOH A 2 402 431 HOH HOH . D 4 HOH A 3 403 551 HOH HOH . D 4 HOH A 4 404 485 HOH HOH . D 4 HOH A 5 405 448 HOH HOH . D 4 HOH A 6 406 455 HOH HOH . D 4 HOH A 7 407 531 HOH HOH . D 4 HOH A 8 408 504 HOH HOH . D 4 HOH A 9 409 452 HOH HOH . D 4 HOH A 10 410 477 HOH HOH . D 4 HOH A 11 411 447 HOH HOH . D 4 HOH A 12 412 494 HOH HOH . D 4 HOH A 13 413 407 HOH HOH . D 4 HOH A 14 414 544 HOH HOH . D 4 HOH A 15 415 553 HOH HOH . D 4 HOH A 16 416 432 HOH HOH . D 4 HOH A 17 417 444 HOH HOH . D 4 HOH A 18 418 489 HOH HOH . D 4 HOH A 19 419 505 HOH HOH . D 4 HOH A 20 420 517 HOH HOH . D 4 HOH A 21 421 514 HOH HOH . D 4 HOH A 22 422 441 HOH HOH . D 4 HOH A 23 423 507 HOH HOH . D 4 HOH A 24 424 525 HOH HOH . D 4 HOH A 25 425 570 HOH HOH . D 4 HOH A 26 426 421 HOH HOH . D 4 HOH A 27 427 403 HOH HOH . D 4 HOH A 28 428 535 HOH HOH . D 4 HOH A 29 429 537 HOH HOH . D 4 HOH A 30 430 492 HOH HOH . D 4 HOH A 31 431 487 HOH HOH . D 4 HOH A 32 432 420 HOH HOH . D 4 HOH A 33 433 461 HOH HOH . D 4 HOH A 34 434 497 HOH HOH . D 4 HOH A 35 435 501 HOH HOH . D 4 HOH A 36 436 511 HOH HOH . D 4 HOH A 37 437 423 HOH HOH . D 4 HOH A 38 438 418 HOH HOH . D 4 HOH A 39 439 490 HOH HOH . D 4 HOH A 40 440 427 HOH HOH . D 4 HOH A 41 441 410 HOH HOH . D 4 HOH A 42 442 483 HOH HOH . D 4 HOH A 43 443 457 HOH HOH . D 4 HOH A 44 444 474 HOH HOH . D 4 HOH A 45 445 496 HOH HOH . D 4 HOH A 46 446 599 HOH HOH . D 4 HOH A 47 447 453 HOH HOH . D 4 HOH A 48 448 495 HOH HOH . D 4 HOH A 49 449 459 HOH HOH . D 4 HOH A 50 450 436 HOH HOH . D 4 HOH A 51 451 557 HOH HOH . D 4 HOH A 52 452 442 HOH HOH . D 4 HOH A 53 453 439 HOH HOH . D 4 HOH A 54 454 445 HOH HOH . D 4 HOH A 55 455 476 HOH HOH . D 4 HOH A 56 456 451 HOH HOH . D 4 HOH A 57 457 434 HOH HOH . D 4 HOH A 58 458 475 HOH HOH . D 4 HOH A 59 459 424 HOH HOH . D 4 HOH A 60 460 510 HOH HOH . D 4 HOH A 61 461 438 HOH HOH . D 4 HOH A 62 462 484 HOH HOH . D 4 HOH A 63 463 469 HOH HOH . D 4 HOH A 64 464 406 HOH HOH . D 4 HOH A 65 465 549 HOH HOH . D 4 HOH A 66 466 446 HOH HOH . D 4 HOH A 67 467 472 HOH HOH . D 4 HOH A 68 468 450 HOH HOH . D 4 HOH A 69 469 414 HOH HOH . D 4 HOH A 70 470 428 HOH HOH . D 4 HOH A 71 471 405 HOH HOH . D 4 HOH A 72 472 576 HOH HOH . D 4 HOH A 73 473 425 HOH HOH . D 4 HOH A 74 474 417 HOH HOH . D 4 HOH A 75 475 458 HOH HOH . D 4 HOH A 76 476 523 HOH HOH . D 4 HOH A 77 477 412 HOH HOH . D 4 HOH A 78 478 408 HOH HOH . D 4 HOH A 79 479 546 HOH HOH . D 4 HOH A 80 480 413 HOH HOH . D 4 HOH A 81 481 464 HOH HOH . D 4 HOH A 82 482 463 HOH HOH . D 4 HOH A 83 483 547 HOH HOH . D 4 HOH A 84 484 416 HOH HOH . D 4 HOH A 85 485 513 HOH HOH . D 4 HOH A 86 486 500 HOH HOH . D 4 HOH A 87 487 499 HOH HOH . D 4 HOH A 88 488 470 HOH HOH . D 4 HOH A 89 489 443 HOH HOH . D 4 HOH A 90 490 527 HOH HOH . D 4 HOH A 91 491 561 HOH HOH . D 4 HOH A 92 492 518 HOH HOH . D 4 HOH A 93 493 596 HOH HOH . D 4 HOH A 94 494 460 HOH HOH . D 4 HOH A 95 495 519 HOH HOH . D 4 HOH A 96 496 468 HOH HOH . D 4 HOH A 97 497 411 HOH HOH . D 4 HOH A 98 498 577 HOH HOH . D 4 HOH A 99 499 404 HOH HOH . D 4 HOH A 100 500 401 HOH HOH . D 4 HOH A 101 501 486 HOH HOH . D 4 HOH A 102 502 560 HOH HOH . D 4 HOH A 103 503 536 HOH HOH . D 4 HOH A 104 504 568 HOH HOH . D 4 HOH A 105 505 479 HOH HOH . D 4 HOH A 106 506 440 HOH HOH . D 4 HOH A 107 507 456 HOH HOH . D 4 HOH A 108 508 522 HOH HOH . D 4 HOH A 109 509 419 HOH HOH . D 4 HOH A 110 510 554 HOH HOH . D 4 HOH A 111 511 533 HOH HOH . D 4 HOH A 112 512 422 HOH HOH . D 4 HOH A 113 513 548 HOH HOH . D 4 HOH A 114 514 540 HOH HOH . D 4 HOH A 115 515 526 HOH HOH . D 4 HOH A 116 516 538 HOH HOH . D 4 HOH A 117 517 481 HOH HOH . D 4 HOH A 118 518 435 HOH HOH . D 4 HOH A 119 519 564 HOH HOH . D 4 HOH A 120 520 556 HOH HOH . D 4 HOH A 121 521 503 HOH HOH . D 4 HOH A 122 522 595 HOH HOH . D 4 HOH A 123 523 433 HOH HOH . D 4 HOH A 124 524 488 HOH HOH . D 4 HOH A 125 525 415 HOH HOH . D 4 HOH A 126 526 530 HOH HOH . D 4 HOH A 127 527 409 HOH HOH . D 4 HOH A 128 528 506 HOH HOH . D 4 HOH A 129 529 565 HOH HOH . D 4 HOH A 130 530 467 HOH HOH . D 4 HOH A 131 531 583 HOH HOH . D 4 HOH A 132 532 466 HOH HOH . D 4 HOH A 133 533 402 HOH HOH . D 4 HOH A 134 534 471 HOH HOH . D 4 HOH A 135 535 567 HOH HOH . D 4 HOH A 136 536 437 HOH HOH . D 4 HOH A 137 537 575 HOH HOH . D 4 HOH A 138 538 429 HOH HOH . D 4 HOH A 139 539 480 HOH HOH . D 4 HOH A 140 540 562 HOH HOH . D 4 HOH A 141 541 478 HOH HOH . D 4 HOH A 142 542 594 HOH HOH . D 4 HOH A 143 543 482 HOH HOH . D 4 HOH A 144 544 528 HOH HOH . D 4 HOH A 145 545 426 HOH HOH . D 4 HOH A 146 546 600 HOH HOH . D 4 HOH A 147 547 515 HOH HOH . D 4 HOH A 148 548 430 HOH HOH . D 4 HOH A 149 549 542 HOH HOH . D 4 HOH A 150 550 592 HOH HOH . D 4 HOH A 151 551 555 HOH HOH . D 4 HOH A 152 552 572 HOH HOH . D 4 HOH A 153 553 579 HOH HOH . D 4 HOH A 154 554 571 HOH HOH . D 4 HOH A 155 555 524 HOH HOH . D 4 HOH A 156 556 552 HOH HOH . D 4 HOH A 157 557 532 HOH HOH . D 4 HOH A 158 558 462 HOH HOH . D 4 HOH A 159 559 593 HOH HOH . D 4 HOH A 160 560 585 HOH HOH . D 4 HOH A 161 561 493 HOH HOH . D 4 HOH A 162 562 508 HOH HOH . D 4 HOH A 163 563 498 HOH HOH . D 4 HOH A 164 564 573 HOH HOH . D 4 HOH A 165 565 584 HOH HOH . D 4 HOH A 166 566 449 HOH HOH . D 4 HOH A 167 567 559 HOH HOH . D 4 HOH A 168 568 569 HOH HOH . D 4 HOH A 169 569 541 HOH HOH . D 4 HOH A 170 570 465 HOH HOH . D 4 HOH A 171 571 539 HOH HOH . D 4 HOH A 172 572 454 HOH HOH . D 4 HOH A 173 573 589 HOH HOH . D 4 HOH A 174 574 520 HOH HOH . D 4 HOH A 175 575 590 HOH HOH . D 4 HOH A 176 576 502 HOH HOH . D 4 HOH A 177 577 558 HOH HOH . D 4 HOH A 178 578 588 HOH HOH . D 4 HOH A 179 579 512 HOH HOH . D 4 HOH A 180 580 586 HOH HOH . D 4 HOH A 181 581 587 HOH HOH . D 4 HOH A 182 582 597 HOH HOH . D 4 HOH A 183 583 578 HOH HOH . D 4 HOH A 184 584 543 HOH HOH . D 4 HOH A 185 585 521 HOH HOH . D 4 HOH A 186 586 516 HOH HOH . D 4 HOH A 187 587 566 HOH HOH . D 4 HOH A 188 588 491 HOH HOH . D 4 HOH A 189 589 545 HOH HOH . D 4 HOH A 190 590 581 HOH HOH . D 4 HOH A 191 591 580 HOH HOH . D 4 HOH A 192 592 550 HOH HOH . D 4 HOH A 193 593 563 HOH HOH . D 4 HOH A 194 594 591 HOH HOH . D 4 HOH A 195 595 529 HOH HOH . D 4 HOH A 196 596 582 HOH HOH . D 4 HOH A 197 597 534 HOH HOH . D 4 HOH A 198 598 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 Q9O . . . C 3 0.27 6.628 29.203 1 27.8 ? N1 Q9O 302 A 1 HETATM 2 C C4 Q9O . . . C 3 -0.815 7.074 26.931 1 26.59 ? C4 Q9O 302 A 1 HETATM 3 C C5 Q9O . . . C 3 -0.549 5.798 26.433 1 27.7 ? C5 Q9O 302 A 1 HETATM 4 C C6 Q9O . . . C 3 -0.65 5.506 25.085 1 27.43 ? C6 Q9O 302 A 1 HETATM 5 C C7 Q9O . . . C 3 -1.038 6.479 24.183 1 24.03 ? C7 Q9O 302 A 1 HETATM 6 C C8 Q9O . . . C 3 -1.334 7.752 24.635 1 21.66 ? C8 Q9O 302 A 1 HETATM 7 C C10 Q9O . . . C 3 -1.526 10.575 25.052 1 20.82 ? C10 Q9O 302 A 1 HETATM 8 C C13 Q9O . . . C 3 -1.315 11.874 22.62 1 19.53 ? C13 Q9O 302 A 1 HETATM 9 C C15 Q9O . . . C 3 -0.259 10.927 24.546 1 24.52 ? C15 Q9O 302 A 1 HETATM 10 C C1 Q9O . . . C 3 1.636 6.846 28.742 1 28.86 ? C1 Q9O 302 A 1 HETATM 11 C C11 Q9O . . . C 3 -2.683 10.863 24.311 1 17.11 ? C11 Q9O 302 A 1 HETATM 12 C C12 Q9O . . . C 3 -2.567 11.511 23.092 1 18.5 ? C12 Q9O 302 A 1 HETATM 13 C C14 Q9O . . . C 3 -0.163 11.584 23.338 1 22.71 ? C14 Q9O 302 A 1 HETATM 14 C C2 Q9O . . . C 3 0.158 6.964 30.624 1 23.76 ? C2 Q9O 302 A 1 HETATM 15 C C3 Q9O . . . C 3 -0.699 7.401 28.408 1 26.01 ? C3 Q9O 302 A 1 HETATM 16 C C9 Q9O . . . C 3 -1.23 8.06 26.017 1 24.64 ? C9 Q9O 302 A 1 HETATM 17 O O1 Q9O . . . C 3 -1.215 12.496 21.418 1 17.43 ? O1 Q9O 302 A 1 HETATM 18 O O2 Q9O . . . C 3 -3.923 10.514 24.732 1 16.83 ? O2 Q9O 302 A 1 HETATM 19 S S1 Q9O . . . C 3 -1.608 9.697 26.593 1 22.73 ? S1 Q9O 302 A 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 114 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 40 _model_server_stats.element_count 19 #