data_8W53
#
_model_server_result.job_id            lkGGxs9L9wZynQYO_XPRfg 
_model_server_result.datetime_utc      '2024-10-11 04:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    8W53 
#
_exptl.entry_id    8W53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W53 
_cell.length_a            72.442 
_cell.length_b            80.841 
_cell.length_c            180.242 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8W53 
_atom_sites.fract_transf_matrix[1][1]    0.013804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UDP B 1 501 1 UDP UDP . 
D 2 UDP A 1 501 2 UDP UDP . 
E 3 GOL A 1 502 1 GOL GOL . 
F 4 HOH B 1 601 29 HOH HOH . 
F 4 HOH B 2 602 49 HOH HOH . 
F 4 HOH B 3 603 48 HOH HOH . 
F 4 HOH B 4 604 52 HOH HOH . 
F 4 HOH B 5 605 54 HOH HOH . 
F 4 HOH B 6 606 31 HOH HOH . 
F 4 HOH B 7 607 10 HOH HOH . 
F 4 HOH B 8 608 46 HOH HOH . 
F 4 HOH B 9 609 17 HOH HOH . 
F 4 HOH B 10 610 53 HOH HOH . 
F 4 HOH B 11 611 9 HOH HOH . 
F 4 HOH B 12 612 36 HOH HOH . 
F 4 HOH B 13 613 50 HOH HOH . 
F 4 HOH B 14 614 8 HOH HOH . 
F 4 HOH B 15 615 37 HOH HOH . 
F 4 HOH B 16 616 41 HOH HOH . 
F 4 HOH B 17 617 6 HOH HOH . 
F 4 HOH B 18 618 24 HOH HOH . 
F 4 HOH B 19 619 27 HOH HOH . 
F 4 HOH B 20 620 28 HOH HOH . 
F 4 HOH B 21 621 18 HOH HOH . 
F 4 HOH B 22 622 21 HOH HOH . 
F 4 HOH B 23 623 47 HOH HOH . 
F 4 HOH B 24 624 32 HOH HOH . 
F 4 HOH B 25 625 11 HOH HOH . 
F 4 HOH B 26 626 30 HOH HOH . 
F 4 HOH B 27 627 42 HOH HOH . 
G 4 HOH A 1 601 4 HOH HOH . 
G 4 HOH A 2 602 38 HOH HOH . 
G 4 HOH A 3 603 20 HOH HOH . 
G 4 HOH A 4 604 26 HOH HOH . 
G 4 HOH A 5 605 2 HOH HOH . 
G 4 HOH A 6 606 12 HOH HOH . 
G 4 HOH A 7 607 5 HOH HOH . 
G 4 HOH A 8 608 7 HOH HOH . 
G 4 HOH A 9 609 22 HOH HOH . 
G 4 HOH A 10 610 51 HOH HOH . 
G 4 HOH A 11 611 39 HOH HOH . 
G 4 HOH A 12 612 13 HOH HOH . 
G 4 HOH A 13 613 23 HOH HOH . 
G 4 HOH A 14 614 16 HOH HOH . 
G 4 HOH A 15 615 25 HOH HOH . 
G 4 HOH A 16 616 35 HOH HOH . 
G 4 HOH A 17 617 34 HOH HOH . 
G 4 HOH A 18 618 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -35.523 -52.555 23.156 1 78.62 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . E 3 -36.722 -52.195 23.779 1 74.91 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . E 3 -34.823 -53.587 24.079 1 76.3 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . E 3 -33.924 -54.398 23.4 1 74.25 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . E 3 -34.151 -52.751 25.186 1 78.76 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . E 3 -34.83 -53.053 26.361 1 75.15 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#