data_8W5A # _model_server_result.job_id X-cItE8WOwlMij2D5av9dg _model_server_result.datetime_utc '2024-11-22 19:31:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8W5A # _exptl.entry_id 8W5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.28 _cell.angle_gamma 90 _cell.entry_id 8W5A _cell.length_a 35.696 _cell.length_b 48.742 _cell.length_c 39.639 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 17 A CYS 450 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A SG CYS 20 A CYS 453 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 32 A CYS 465 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A ND1 HIS 34 A HIS 467 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 A SG CYS 38 A CYS 471 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 A SG CYS 41 A CYS 474 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 A SG CYS 48 A CYS 481 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 A SG CYS 51 A CYS 484 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc9 B SG CYS 17 B CYS 450 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc10 B SG CYS 20 B CYS 453 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc11 B OD1 ASP 22 B ASP 455 1_555 E CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc12 B SG CYS 32 B CYS 465 1_555 G ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 B ND1 HIS 34 B HIS 467 1_555 G ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc14 B SG CYS 38 B CYS 471 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc15 B SG CYS 41 B CYS 474 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc16 B SG CYS 48 B CYS 481 1_555 G ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc17 B SG CYS 51 B CYS 484 1_555 G ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc18 E CA CA . B CA 501 1_555 I O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc19 E CA CA . B CA 501 1_555 I O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc20 E CA CA . B CA 501 1_555 I O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc21 E CA CA . B CA 501 1_555 I O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc22 E CA CA . B CA 501 1_555 I O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8W5A _atom_sites.fract_transf_matrix[1][1] 0.028014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003579 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 1 ZN ZN . D 2 ZN A 1 502 2 ZN ZN . E 3 CA B 1 501 1 CA CA . F 2 ZN B 1 502 3 ZN ZN . G 2 ZN B 1 503 4 ZN ZN . H 4 HOH A 1 601 31 HOH HOH . H 4 HOH A 2 602 16 HOH HOH . H 4 HOH A 3 603 32 HOH HOH . H 4 HOH A 4 604 17 HOH HOH . H 4 HOH A 5 605 4 HOH HOH . H 4 HOH A 6 606 22 HOH HOH . H 4 HOH A 7 607 23 HOH HOH . H 4 HOH A 8 608 14 HOH HOH . H 4 HOH A 9 609 19 HOH HOH . H 4 HOH A 10 610 20 HOH HOH . H 4 HOH A 11 611 38 HOH HOH . H 4 HOH A 12 612 25 HOH HOH . I 4 HOH B 1 601 18 HOH HOH . I 4 HOH B 2 602 3 HOH HOH . I 4 HOH B 3 603 26 HOH HOH . I 4 HOH B 4 604 33 HOH HOH . I 4 HOH B 5 605 36 HOH HOH . I 4 HOH B 6 606 5 HOH HOH . I 4 HOH B 7 607 7 HOH HOH . I 4 HOH B 8 608 13 HOH HOH . I 4 HOH B 9 609 15 HOH HOH . I 4 HOH B 10 610 6 HOH HOH . I 4 HOH B 11 611 9 HOH HOH . I 4 HOH B 12 612 11 HOH HOH . I 4 HOH B 13 613 10 HOH HOH . I 4 HOH B 14 614 37 HOH HOH . I 4 HOH B 15 615 12 HOH HOH . I 4 HOH B 16 616 27 HOH HOH . I 4 HOH B 17 617 34 HOH HOH . I 4 HOH B 18 618 2 HOH HOH . I 4 HOH B 19 619 8 HOH HOH . I 4 HOH B 20 620 28 HOH HOH . I 4 HOH B 21 621 1 HOH HOH . I 4 HOH B 22 622 29 HOH HOH . I 4 HOH B 23 623 21 HOH HOH . I 4 HOH B 24 624 30 HOH HOH . I 4 HOH B 25 625 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.408 _atom_site.Cartn_y 15.563 _atom_site.Cartn_z 10.715 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #